Strain Fitness in Sphingobium sp. HT1-2 around GFF3867

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,908,616	-		GFF3865	0.55	-1.8
3,908,641	-		GFF3865	0.58	-0.0
3,908,650	+		GFF3865	0.59	-0.8
3,908,650	+		GFF3865	0.59	-2.0
3,908,654	+		GFF3865	0.60	+1.6
3,908,745	-		GFF3865	0.69	-1.0
3,908,756	+		GFF3865	0.70	+1.1
3,908,777	-		GFF3865	0.73	-0.7
3,908,779	+		GFF3865	0.73	+0.0
3,908,779	+		GFF3865	0.73	-1.0
3,908,779	+		GFF3865	0.73	+0.5
3,908,787	-		GFF3865	0.74	-0.3
3,908,787	-		GFF3865	0.74	-1.1
3,908,787	-		GFF3865	0.74	-1.6
3,908,787	-		GFF3865	0.74	+0.4
3,908,787	-		GFF3865	0.74	-1.6
3,908,806	-		GFF3865	0.76	-0.3
3,908,821	-		GFF3865	0.77	-0.3
3,908,822	+		GFF3865	0.77	+0.5
3,908,825	-		GFF3865	0.78	-0.1
3,908,826	-		GFF3865	0.78	+0.2
3,908,831	-		GFF3865	0.78	-0.6
3,908,831	-		GFF3865	0.78	-1.3
3,908,853	+		GFF3865	0.81	+2.2
3,908,862	-		GFF3865	0.82	-0.3
3,908,898	+		GFF3865	0.86	-3.0
3,908,906	-		GFF3865	0.86	-1.2
3,908,906	-		GFF3865	0.86	-0.6
3,908,906	-		GFF3865	0.86	-1.0
3,908,907	-		GFF3865	0.87	+0.6
3,908,918	+		GFF3865	0.88	-1.4
3,908,926	-		GFF3865	0.89	-0.0
3,908,928	+		GFF3865	0.89	+0.2
3,908,961	-				-1.3
3,908,978	+				+0.6
3,908,978	+				+0.3
3,909,043	+				+0.5
3,909,072	-				-0.2
3,909,073	+				+1.6
3,909,074	+				-0.1
3,909,083	-				-0.0
3,909,084	+		GFF3866	0.10	-0.5
3,909,088	-		GFF3866	0.11	-0.8
3,909,096	+		GFF3866	0.13	-0.3
3,909,101	+		GFF3866	0.14	-0.1
3,909,101	+		GFF3866	0.14	+0.4
3,909,101	+		GFF3866	0.14	+0.7
3,909,101	+		GFF3866	0.14	+0.3
3,909,101	+		GFF3866	0.14	-1.5
3,909,101	+		GFF3866	0.14	-0.4
3,909,101	+		GFF3866	0.14	+1.0
3,909,101	+		GFF3866	0.14	-1.4
3,909,101	+		GFF3866	0.14	-0.7
3,909,101	+		GFF3866	0.14	-0.8
3,909,101	+		GFF3866	0.14	-0.8
3,909,106	+		GFF3866	0.15	-1.3
3,909,106	+		GFF3866	0.15	-0.7
3,909,106	+		GFF3866	0.15	-0.9
3,909,106	+		GFF3866	0.15	-1.3
3,909,106	+		GFF3866	0.15	-0.4
3,909,108	+		GFF3866	0.16	-2.2
3,909,108	+		GFF3866	0.16	-0.8
3,909,108	+		GFF3866	0.16	-0.5
3,909,109	-		GFF3866	0.16	-0.6
3,909,109	-		GFF3866	0.16	+0.4
3,909,109	-		GFF3866	0.16	-0.8
3,909,109	-		GFF3866	0.16	+0.9
3,909,109	-		GFF3866	0.16	+0.2
3,909,109	-		GFF3866	0.16	-0.0
3,909,109	-		GFF3866	0.16	+0.3
3,909,109	-		GFF3866	0.16	+1.6
3,909,109	-		GFF3866	0.16	-0.2
3,909,114	-		GFF3866	0.17	-0.7
3,909,135	+		GFF3866	0.22	-2.2
3,909,135	+		GFF3866	0.22	+1.3
3,909,143	-		GFF3866	0.24	-0.7
3,909,143	-		GFF3866	0.24	+0.7
3,909,143	-		GFF3866	0.24	-3.4
3,909,143	-		GFF3866	0.24	-0.0
3,909,150	+		GFF3866	0.25	+0.5
3,909,150	+		GFF3866	0.25	+0.5
3,909,156	+		GFF3866	0.26	+0.0
3,909,156	+		GFF3866	0.26	-1.5
3,909,159	-		GFF3866	0.27	+0.5
3,909,186	+		GFF3866	0.33	-0.5
3,909,194	+		GFF3866	0.35	-0.5
3,909,194	+		GFF3866	0.35	+1.6
3,909,202	-		GFF3866	0.37	-0.8
3,909,215	-		GFF3866	0.40	-0.5
3,909,219	+		GFF3866	0.41	-1.4
3,909,221	+		GFF3866	0.41	+0.8
3,909,229	-		GFF3866	0.43	+1.7
3,909,233	+		GFF3866	0.44	-0.6
3,909,239	-		GFF3866	0.45	+0.7
3,909,239	-		GFF3866	0.45	-0.8
3,909,241	-		GFF3866	0.46	-0.3
3,909,259	+		GFF3866	0.50	+1.2
3,909,259	+		GFF3866	0.50	+0.5
3,909,259	+		GFF3866	0.50	+0.3
3,909,259	+		GFF3866	0.50	-0.4
3,909,267	-		GFF3866	0.52	+0.4
3,909,267	-		GFF3866	0.52	-0.8
3,909,282	+		GFF3866	0.55	+0.9
3,909,284	+		GFF3866	0.56	-0.1
3,909,289	+		GFF3866	0.57	-0.2
3,909,290	-		GFF3866	0.57	+0.1
3,909,304	-		GFF3866	0.60	-3.0
3,909,304	-		GFF3866	0.60	-1.2
3,909,306	+		GFF3866	0.61	-1.2
3,909,314	-		GFF3866	0.63	-1.3
3,909,322	+		GFF3866	0.64	+0.1
3,909,355	+		GFF3866	0.72	-0.6
3,909,369	+		GFF3866	0.75	+0.2
3,909,383	+		GFF3866	0.78	-0.3
3,909,387	+		GFF3866	0.79	+0.8
3,909,387	+		GFF3866	0.79	+0.2
3,909,387	+		GFF3866	0.79	+0.4
3,909,387	+		GFF3866	0.79	-0.1
3,909,387	+		GFF3866	0.79	+0.1
3,909,387	+		GFF3866	0.79	-2.3
3,909,387	+		GFF3866	0.79	-0.8
3,909,387	+		GFF3866	0.79	+0.3
3,909,395	-		GFF3866	0.81	-1.9
3,909,411	+		GFF3866	0.85	+0.4
3,909,423	+		GFF3866	0.87	-0.5
3,909,424	-		GFF3866	0.88	+0.6
3,909,465	-				+0.0
3,909,475	-				-1.9
3,909,527	-				+1.9
3,909,531	+				-0.2
3,909,541	+				+0.9
3,909,556	+				-0.5
3,909,569	-				+0.6
3,909,595	+				-0.2
3,909,596	+				+0.2
3,909,603	-				-1.2
3,909,610	-				+0.4
3,909,636	+				+0.1
3,909,636	+				-1.4
3,909,679	-		GFF3867	0.13	-1.3
3,909,733	-		GFF3867	0.21	-0.5
3,909,735	+		GFF3867	0.21	+0.0
3,909,817	+		GFF3867	0.32	-1.0
3,909,822	+		GFF3867	0.33	+1.4
3,909,822	+		GFF3867	0.33	-0.2
3,909,822	+		GFF3867	0.33	-0.5
3,909,822	+		GFF3867	0.33	+0.2
3,909,822	+		GFF3867	0.33	+0.3
3,909,825	-		GFF3867	0.33	-1.5
3,909,830	-		GFF3867	0.34	+0.4
3,909,830	-		GFF3867	0.34	-0.1
3,909,830	-		GFF3867	0.34	-1.8
3,909,830	-		GFF3867	0.34	+0.7
3,909,830	-		GFF3867	0.34	-0.1
3,909,835	-		GFF3867	0.35	+0.1
3,909,854	+		GFF3867	0.37	-1.5
3,909,862	-		GFF3867	0.38	-0.3
3,909,862	-		GFF3867	0.38	-0.6
3,909,862	-		GFF3867	0.38	+1.3
3,909,889	-		GFF3867	0.42	-2.6
3,909,897	+		GFF3867	0.43	+1.5
3,909,905	-		GFF3867	0.44	-0.1
3,909,910	-		GFF3867	0.45	+0.1
3,909,915	+		GFF3867	0.45	+0.3
3,909,921	+		GFF3867	0.46	+0.2
3,909,922	+		GFF3867	0.46	-1.3
3,909,922	+		GFF3867	0.46	-0.3
3,909,930	-		GFF3867	0.47	-0.6
3,909,930	-		GFF3867	0.47	-0.8
3,909,930	-		GFF3867	0.47	+0.1
3,909,930	-		GFF3867	0.47	-1.5
3,909,948	+		GFF3867	0.50	-1.7
3,909,956	-		GFF3867	0.51	+1.0
3,909,956	-		GFF3867	0.51	-1.3
3,909,956	-		GFF3867	0.51	+0.1
3,909,966	+		GFF3867	0.52	-0.6
3,909,974	-		GFF3867	0.53	+0.4
3,909,974	-		GFF3867	0.53	-1.5
3,909,979	+		GFF3867	0.54	-0.1
3,909,984	+		GFF3867	0.55	-0.0
3,909,984	+		GFF3867	0.55	+1.0
3,909,984	+		GFF3867	0.55	-1.6
3,909,984	+		GFF3867	0.55	+0.2
3,910,041	+		GFF3867	0.62	-0.8
3,910,063	+		GFF3867	0.65	-0.1
3,910,073	+		GFF3867	0.67	-0.6
3,910,073	+		GFF3867	0.67	-0.6
3,910,073	+		GFF3867	0.67	-1.4
3,910,073	+		GFF3867	0.67	-0.6
3,910,073	+		GFF3867	0.67	+0.1
3,910,073	+		GFF3867	0.67	-1.3
3,910,073	+		GFF3867	0.67	-0.8
3,910,073	+		GFF3867	0.67	-1.1
3,910,073	+		GFF3867	0.67	+0.9
3,910,073	+		GFF3867	0.67	+0.3
3,910,073	+		GFF3867	0.67	-2.2
3,910,073	+		GFF3867	0.67	-0.8
3,910,073	+		GFF3867	0.67	-0.6
3,910,073	+		GFF3867	0.67	-1.3
3,910,073	+		GFF3867	0.67	-0.1
3,910,073	+		GFF3867	0.67	-0.2
3,910,073	+		GFF3867	0.67	-1.8
3,910,073	+		GFF3867	0.67	-0.7
3,910,073	+		GFF3867	0.67	-0.8
3,910,073	+		GFF3867	0.67	-1.2
3,910,073	+		GFF3867	0.67	-1.0
3,910,073	+		GFF3867	0.67	-1.2
3,910,073	+		GFF3867	0.67	-1.8
3,910,073	+		GFF3867	0.67	-0.9
3,910,073	+		GFF3867	0.67	+0.5
3,910,073	+		GFF3867	0.67	+0.2
3,910,073	+		GFF3867	0.67	-1.2
3,910,073	+		GFF3867	0.67	+0.5
3,910,073	+		GFF3867	0.67	+0.3
3,910,073	+		GFF3867	0.67	+0.4
3,910,073	+		GFF3867	0.67	-1.2
3,910,073	+		GFF3867	0.67	+0.1
3,910,073	+		GFF3867	0.67	+1.1
3,910,079	-		GFF3867	0.67	-1.2
3,910,081	-		GFF3867	0.68	+0.1
3,910,081	-		GFF3867	0.68	+0.2
3,910,081	-		GFF3867	0.68	-0.5
3,910,081	-		GFF3867	0.68	-0.2
3,910,081	-		GFF3867	0.68	-0.5
3,910,081	-		GFF3867	0.68	-1.6
3,910,081	-		GFF3867	0.68	-2.4
3,910,081	-		GFF3867	0.68	-2.6
3,910,081	-		GFF3867	0.68	+1.1
3,910,081	-		GFF3867	0.68	-1.3
3,910,081	-		GFF3867	0.68	-1.5
3,910,081	-		GFF3867	0.68	+0.5
3,910,081	-		GFF3867	0.68	-1.4
3,910,081	-		GFF3867	0.68	+1.2
3,910,081	-		GFF3867	0.68	+1.4
3,910,081	-		GFF3867	0.68	-0.8
3,910,081	-		GFF3867	0.68	-2.2
3,910,081	-		GFF3867	0.68	+0.2
3,910,081	-		GFF3867	0.68	-1.5
3,910,081	-		GFF3867	0.68	-0.6
3,910,081	-		GFF3867	0.68	-1.1
3,910,081	-		GFF3867	0.68	-0.4
3,910,081	-		GFF3867	0.68	-0.3
3,910,081	-		GFF3867	0.68	-1.1
3,910,081	-		GFF3867	0.68	+0.3
3,910,081	-		GFF3867	0.68	+0.0
3,910,081	-		GFF3867	0.68	-0.3
3,910,081	-		GFF3867	0.68	+1.0
3,910,081	-		GFF3867	0.68	+1.0
3,910,081	-		GFF3867	0.68	+1.0
3,910,081	-		GFF3867	0.68	+0.2
3,910,081	-		GFF3867	0.68	-0.4
3,910,081	-		GFF3867	0.68	-0.0
3,910,081	-		GFF3867	0.68	-0.5
3,910,081	-		GFF3867	0.68	-0.3
3,910,081	-		GFF3867	0.68	-0.6
3,910,081	-		GFF3867	0.68	+0.7
3,910,081	-		GFF3867	0.68	-2.6
3,910,081	-		GFF3867	0.68	-1.0
3,910,081	-		GFF3867	0.68	-0.4
3,910,088	-		GFF3867	0.69	-0.9
3,910,093	+		GFF3867	0.69	-0.2
3,910,094	-		GFF3867	0.70	+0.0
3,910,095	+		GFF3867	0.70	-1.2
3,910,095	-		GFF3867	0.70	-0.8
3,910,103	-		GFF3867	0.71	+0.2
3,910,119	+		GFF3867	0.73	-0.6
3,910,123	+		GFF3867	0.73	+0.2
3,910,131	-		GFF3867	0.74	-0.2
3,910,224	+		GFF3867	0.87	+0.4
3,910,229	+		GFF3867	0.88	+0.2
3,910,232	-		GFF3867	0.88	-0.3
3,910,237	-		GFF3867	0.89	-0.3
3,910,244	+		GFF3867	0.90	-0.5
3,910,250	+				-0.6
3,910,252	-				-0.5
3,910,252	-				-0.3
3,910,278	+				-1.6
3,910,290	+				-2.4
3,910,298	-				-0.5
3,910,301	+				-0.3
3,910,301	+				-1.0
3,910,307	-				+1.0
3,910,309	-				+0.3
3,910,314	+				-0.2
3,910,321	-				+0.1
3,910,346	+				+0.3
3,910,346	+				-1.5
3,910,346	+				-0.5
3,910,346	+				-1.4
3,910,346	+				-0.6
3,910,346	+				-0.2
3,910,346	+				+0.4
3,910,346	+				-0.0
3,910,346	+				-0.2
3,910,346	+				-0.8
3,910,354	-				+1.0
3,910,354	-				-0.3
3,910,354	-				-0.6
3,910,354	-				+0.2
3,910,354	-				-0.2
3,910,354	-				-1.9
3,910,354	-				-0.7
3,910,354	-				+0.7
3,910,354	-				-3.0
3,910,356	+				-0.1
3,910,360	+				-0.6
3,910,363	-				-0.4
3,910,364	-				+1.0
3,910,372	+				+0.4
3,910,374	-				+0.3
3,910,378	-				-0.9
3,910,400	+				+0.4
3,910,408	+				+0.9
3,910,418	+				-1.6
3,910,426	-				+0.5
3,910,450	+				+0.1
3,910,450	+				-0.3
3,910,455	+				+0.7
3,910,463	-				-0.8
3,910,488	-		GFF3868	0.12	+0.2
3,910,489	+		GFF3868	0.13	-2.4
3,910,498	-		GFF3868	0.16	-0.9
3,910,521	+		GFF3868	0.23	-1.0
3,910,521	+		GFF3868	0.23	+0.1
3,910,529	-		GFF3868	0.25	-1.2
3,910,529	-		GFF3868	0.25	-0.2
3,910,529	-		GFF3868	0.25	-2.2
3,910,535	+		GFF3868	0.27	-0.5
3,910,536	+		GFF3868	0.27	+0.0
3,910,537	+		GFF3868	0.28	+0.1
3,910,541	+		GFF3868	0.29	-1.4
3,910,545	+		GFF3868	0.30	-0.5
3,910,545	+		GFF3868	0.30	-0.8
3,910,545	+		GFF3868	0.30	+1.2
3,910,545	+		GFF3868	0.30	-0.1
3,910,551	+		GFF3868	0.32	+1.7
3,910,553	-		GFF3868	0.33	+0.8
3,910,580	-		GFF3868	0.41	-1.2
3,910,590	-		GFF3868	0.44	+0.8
3,910,590	-		GFF3868	0.44	+0.6
3,910,610	-		GFF3868	0.50	-1.2
3,910,617	+		GFF3868	0.53	-1.3
3,910,623	+		GFF3868	0.55	+1.5
3,910,631	-		GFF3868	0.57	+0.1
3,910,635	-		GFF3868	0.58	-0.4
3,910,656	+		GFF3868	0.65	-1.8
3,910,664	-		GFF3868	0.67	-1.0
3,910,703	-		GFF3868	0.79	-0.1
3,910,718	+		GFF3868	0.84	-0.2
3,910,733	+		GFF3868	0.89	-0.3
3,910,736	-		GFF3868	0.90	-0.8
3,910,736	-		GFF3868	0.90	+0.6
3,910,736	-		GFF3868	0.90	-0.8
3,910,738	+				+0.9
3,910,738	+				-0.7
3,910,753	+				-0.2
3,910,769	+				-0.1
3,910,779	+				+0.4
3,910,781	-				-0.3
3,910,788	-				-0.1
3,910,788	-				+1.6
3,910,788	-				-0.3
3,910,798	-				-0.4
3,910,801	-				-0.3
3,910,810	-		GFF3869	0.10	-2.2
3,910,828	+		GFF3869	0.13	+0.7
3,910,856	-		GFF3869	0.17	-1.2
3,910,864	+		GFF3869	0.18	-0.6
3,910,864	+		GFF3869	0.18	-0.5
3,910,879	+		GFF3869	0.20	+0.7
3,910,887	-		GFF3869	0.21	-0.7
3,910,923	-		GFF3869	0.26	-0.8
3,910,925	+		GFF3869	0.27	-0.6
3,910,925	+		GFF3869	0.27	+1.1
3,910,928	-		GFF3869	0.27	+0.0
3,910,933	-		GFF3869	0.28	-0.7
3,910,949	+		GFF3869	0.30	+1.2
3,910,957	-		GFF3869	0.31	-1.8
3,910,966	+		GFF3869	0.32	+0.8
3,910,970	+		GFF3869	0.33	-1.1
3,910,986	+		GFF3869	0.35	+0.4
3,911,017	+		GFF3869	0.40	+0.1
3,911,065	+		GFF3869	0.47	-2.2
3,911,073	-		GFF3869	0.48	-0.2
3,911,074	+		GFF3869	0.48	+1.0
3,911,079	+		GFF3869	0.49	-0.5
3,911,133	+		GFF3869	0.56	-0.3
3,911,133	+		GFF3869	0.56	+0.3
3,911,133	+		GFF3869	0.56	-0.2
3,911,133	+		GFF3869	0.56	-1.3
3,911,140	+		GFF3869	0.57	+0.1
3,911,141	-		GFF3869	0.58	+0.3
3,911,170	+		GFF3869	0.62	-0.4
3,911,183	+		GFF3869	0.64	-1.1
3,911,192	+		GFF3869	0.65	-0.3
3,911,203	+		GFF3869	0.67	+0.9
3,911,225	+		GFF3869	0.70	+0.0
3,911,239	+		GFF3869	0.72	-1.4
3,911,249	+		GFF3869	0.73	-2.5
3,911,249	+		GFF3869	0.73	+0.5
3,911,261	+		GFF3869	0.75	+1.0
3,911,262	+		GFF3869	0.75	-0.8
3,911,270	-		GFF3869	0.76	-1.6
3,911,270	-		GFF3869	0.76	-2.3
3,911,270	-		GFF3869	0.76	+1.1
3,911,303	+		GFF3869	0.81	-1.4
3,911,303	+		GFF3869	0.81	+0.7
3,911,303	+		GFF3869	0.81	-0.2
3,911,303	+		GFF3869	0.81	+0.2
3,911,303	+		GFF3869	0.81	-0.3
3,911,303	+		GFF3869	0.81	+0.1
3,911,303	+		GFF3869	0.81	-2.0
3,911,311	-		GFF3869	0.82	-0.8
3,911,311	-		GFF3869	0.82	-0.8
3,911,311	-		GFF3869	0.82	+0.3