Strain Fitness in Sphingobium sp. HT1-2 around GFF3759

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,796,130	-		GFF3757	0.64	-0.2
3,796,130	-		GFF3757	0.64	+0.0
3,796,152	-		GFF3757	0.69	-0.6
3,796,152	-		GFF3757	0.69	-0.4
3,796,247	-		GFF3757	0.89	+0.1
3,796,294	-				-0.1
3,796,298	-				+0.5
3,796,311	-				-1.0
3,796,311	-				+0.3
3,796,321	+				-3.0
3,796,331	+				+0.4
3,796,333	+				-1.8
3,796,333	+				-2.3
3,796,340	+				-2.3
3,796,340	+				+0.3
3,796,348	-				+0.6
3,796,356	+				-0.6
3,796,356	+				-2.4
3,796,357	+				+0.0
3,796,357	+				+0.6
3,796,357	+				+0.2
3,796,364	-				-2.2
3,796,373	+				-1.4
3,796,373	+				-0.3
3,796,373	+				-1.3
3,796,380	+				+0.2
3,796,380	+				-0.6
3,796,380	+				-1.0
3,796,380	+				+0.5
3,796,380	+				-1.1
3,796,380	+				+0.2
3,796,380	+				-2.4
3,796,388	-				-1.2
3,796,388	-				-0.9
3,796,388	-				-1.1
3,796,388	-				+1.1
3,796,388	-				+0.6
3,796,388	-				-1.3
3,796,388	-				+0.1
3,796,388	-				+1.0
3,796,406	+				+0.4
3,796,406	+				+1.1
3,796,416	-				+0.1
3,796,421	-				-1.1
3,796,421	-				-1.3
3,796,439	+				+1.0
3,796,447	-				-1.9
3,796,452	-				-1.5
3,796,468	+				+0.4
3,796,476	-				-2.1
3,796,476	-				-0.6
3,796,476	-				-0.5
3,796,477	+				-0.2
3,796,477	+				+0.0
3,796,477	+				+0.4
3,796,477	+				+0.3
3,796,477	+				+1.4
3,796,477	+				-2.1
3,796,477	+				+0.4
3,796,477	+				-0.2
3,796,477	+				-0.2
3,796,477	+				-1.7
3,796,477	+				-0.1
3,796,477	+				-0.8
3,796,477	+				-0.2
3,796,477	+				+0.7
3,796,477	+				-1.8
3,796,477	+				-0.4
3,796,477	+				-0.9
3,796,477	+				+1.0
3,796,477	+				-0.4
3,796,477	+				-0.8
3,796,477	+				-0.2
3,796,477	+				-0.5
3,796,478	+				-1.7
3,796,485	-				-2.9
3,796,485	-				+0.8
3,796,485	-				-0.8
3,796,485	-				-0.7
3,796,485	-				-1.0
3,796,485	-				-2.1
3,796,485	-				+0.2
3,796,485	-				-1.3
3,796,485	-				-1.6
3,796,485	-				+0.8
3,796,485	-				-1.2
3,796,485	-				-2.9
3,796,485	-				-1.6
3,796,485	-				-1.6
3,796,496	+				-1.3
3,796,510	+				-0.6
3,796,513	+				+0.5
3,796,518	+				+0.2
3,796,519	+				+0.9
3,796,519	+				+0.4
3,796,526	-				-0.9
3,796,534	+				+0.9
3,796,580	+		GFF3758	0.16	+0.2
3,796,588	-		GFF3758	0.17	+0.3
3,796,588	-		GFF3758	0.17	-1.4
3,796,593	-		GFF3758	0.18	-1.3
3,796,593	-		GFF3758	0.18	-0.3
3,796,609	-		GFF3758	0.21	-0.7
3,796,626	+		GFF3758	0.24	-1.0
3,796,626	+		GFF3758	0.24	+0.3
3,796,651	-		GFF3758	0.29	-1.4
3,796,688	+		GFF3758	0.35	-1.9
3,796,720	-		GFF3758	0.41	+0.0
3,796,729	-		GFF3758	0.42	+0.5
3,796,767	+		GFF3758	0.49	+1.2
3,796,783	-		GFF3758	0.52	-0.7
3,796,783	-		GFF3758	0.52	-1.7
3,796,783	-		GFF3758	0.52	-0.6
3,796,784	+		GFF3758	0.52	-1.2
3,796,784	+		GFF3758	0.52	-1.1
3,796,784	+		GFF3758	0.52	-0.1
3,796,792	-		GFF3758	0.53	-1.7
3,796,792	-		GFF3758	0.53	-1.5
3,796,802	-		GFF3758	0.55	-2.5
3,796,853	+		GFF3758	0.64	-2.5
3,796,861	+		GFF3758	0.66	+0.4
3,796,861	-		GFF3758	0.66	-1.6
3,796,865	+		GFF3758	0.66	-0.9
3,796,869	-		GFF3758	0.67	-1.9
3,796,870	+		GFF3758	0.67	-0.7
3,796,870	+		GFF3758	0.67	+0.2
3,796,870	+		GFF3758	0.67	-1.3
3,796,870	+		GFF3758	0.67	+0.5
3,796,870	+		GFF3758	0.67	-1.1
3,796,870	+		GFF3758	0.67	-1.1
3,796,870	+		GFF3758	0.67	-0.8
3,796,870	+		GFF3758	0.67	+0.6
3,796,870	+		GFF3758	0.67	-1.5
3,796,870	+		GFF3758	0.67	+0.0
3,796,870	+		GFF3758	0.67	-1.3
3,796,870	+		GFF3758	0.67	-2.2
3,796,870	+		GFF3758	0.67	-1.8
3,796,870	+		GFF3758	0.67	+0.3
3,796,870	+		GFF3758	0.67	-0.6
3,796,870	+		GFF3758	0.67	-0.3
3,796,870	+		GFF3758	0.67	-2.4
3,796,870	+		GFF3758	0.67	+0.0
3,796,870	+		GFF3758	0.67	-0.7
3,796,870	+		GFF3758	0.67	-2.1
3,796,870	+		GFF3758	0.67	-1.5
3,796,870	+		GFF3758	0.67	-1.3
3,796,870	+		GFF3758	0.67	+0.9
3,796,870	+		GFF3758	0.67	-2.9
3,796,870	+		GFF3758	0.67	+0.2
3,796,870	+		GFF3758	0.67	-0.1
3,796,870	+		GFF3758	0.67	-2.5
3,796,875	+		GFF3758	0.68	-1.5
3,796,875	+		GFF3758	0.68	-0.9
3,796,878	-		GFF3758	0.69	-0.2
3,796,878	-		GFF3758	0.69	-0.1
3,796,878	-		GFF3758	0.69	-1.8
3,796,878	-		GFF3758	0.69	-1.3
3,796,878	-		GFF3758	0.69	-1.8
3,796,878	-		GFF3758	0.69	-1.8
3,796,878	-		GFF3758	0.69	+1.1
3,796,878	-		GFF3758	0.69	-2.9
3,796,878	-		GFF3758	0.69	-0.3
3,796,878	-		GFF3758	0.69	-0.9
3,796,878	-		GFF3758	0.69	-1.1
3,796,878	-		GFF3758	0.69	-0.9
3,796,878	-		GFF3758	0.69	-0.7
3,796,878	-		GFF3758	0.69	+0.0
3,796,878	-		GFF3758	0.69	-1.6
3,796,878	-		GFF3758	0.69	-1.4
3,796,878	-		GFF3758	0.69	-0.1
3,796,878	-		GFF3758	0.69	-1.2
3,796,878	-		GFF3758	0.69	-0.5
3,796,878	-		GFF3758	0.69	-0.5
3,796,878	-		GFF3758	0.69	-1.3
3,796,878	-		GFF3758	0.69	-2.0
3,796,878	-		GFF3758	0.69	-2.1
3,796,878	-		GFF3758	0.69	-1.0
3,796,878	-		GFF3758	0.69	+1.2
3,796,878	-		GFF3758	0.69	-1.6
3,796,878	-		GFF3758	0.69	-0.4
3,796,878	-		GFF3758	0.69	+0.1
3,796,878	-		GFF3758	0.69	-0.2
3,796,948	+		GFF3758	0.81	-1.5
3,796,951	-		GFF3758	0.81	-0.9
3,796,985	+		GFF3758	0.87	-2.0
3,796,985	+		GFF3758	0.87	-1.5
3,796,993	-		GFF3758	0.89	-1.3
3,797,014	+				-1.4
3,797,016	+				+1.5
3,797,036	+				+0.5
3,797,049	+				-0.3
3,797,064	+				+0.1
3,797,064	+				-1.9
3,797,064	+				+0.4
3,797,072	-				-0.1
3,797,079	-				-0.5
3,797,080	+				-1.2
3,797,085	+				-0.4
3,797,087	+				-0.6
3,797,088	+				-1.1
3,797,093	-				-1.1
3,797,095	+				-0.3
3,797,095	-				-2.2
3,797,111	+				+0.6
3,797,167	+				-2.2
3,797,175	-				+0.4
3,797,176	+				-1.0
3,797,176	+				-2.8
3,797,176	+				+0.0
3,797,184	-				+0.7
3,797,184	-				-0.5
3,797,217	+		GFF3759	0.12	-1.7
3,797,217	+		GFF3759	0.12	-0.8
3,797,225	-		GFF3759	0.12	-2.1
3,797,261	+		GFF3759	0.15	-1.5
3,797,261	+		GFF3759	0.15	-0.5
3,797,269	-		GFF3759	0.16	-1.1
3,797,273	+		GFF3759	0.16	+0.3
3,797,296	-		GFF3759	0.18	-1.5
3,797,308	+		GFF3759	0.19	-0.7
3,797,308	-		GFF3759	0.19	-1.6
3,797,318	-		GFF3759	0.19	+0.1
3,797,318	-		GFF3759	0.19	-0.5
3,797,327	-		GFF3759	0.20	+0.0
3,797,337	-		GFF3759	0.21	-1.5
3,797,358	+		GFF3759	0.23	-2.8
3,797,361	-		GFF3759	0.23	-1.2
3,797,364	-		GFF3759	0.23	-1.8
3,797,369	-		GFF3759	0.23	-1.0
3,797,376	+		GFF3759	0.24	-0.0
3,797,392	+		GFF3759	0.25	-0.5
3,797,431	+		GFF3759	0.28	-1.2
3,797,432	+		GFF3759	0.28	-0.1
3,797,432	+		GFF3759	0.28	-0.5
3,797,461	-		GFF3759	0.30	-2.1
3,797,470	-		GFF3759	0.31	-0.6
3,797,477	-		GFF3759	0.32	-2.2
3,797,499	+		GFF3759	0.33	-1.0
3,797,508	+		GFF3759	0.34	-0.6
3,797,508	+		GFF3759	0.34	-0.2
3,797,509	+		GFF3759	0.34	-2.8
3,797,509	+		GFF3759	0.34	-2.0
3,797,509	-		GFF3759	0.34	-1.1
3,797,514	+		GFF3759	0.35	-2.2
3,797,514	+		GFF3759	0.35	-1.6
3,797,515	-		GFF3759	0.35	-1.4
3,797,517	-		GFF3759	0.35	-0.2
3,797,517	-		GFF3759	0.35	-1.0
3,797,517	-		GFF3759	0.35	-1.0
3,797,517	-		GFF3759	0.35	-1.3
3,797,517	-		GFF3759	0.35	-1.9
3,797,519	+		GFF3759	0.35	-1.6
3,797,521	+		GFF3759	0.35	-0.5
3,797,522	-		GFF3759	0.35	-1.6
3,797,522	-		GFF3759	0.35	+0.8
3,797,522	-		GFF3759	0.35	+0.3
3,797,522	-		GFF3759	0.35	-2.5
3,797,522	-		GFF3759	0.35	-1.2
3,797,522	-		GFF3759	0.35	+1.0
3,797,522	-		GFF3759	0.35	-1.5
3,797,522	-		GFF3759	0.35	-0.7
3,797,522	-		GFF3759	0.35	+1.0
3,797,522	-		GFF3759	0.35	-0.1
3,797,522	-		GFF3759	0.35	-0.5
3,797,526	+		GFF3759	0.35	-2.2
3,797,527	-		GFF3759	0.36	-1.2
3,797,534	-		GFF3759	0.36	-0.5
3,797,552	+		GFF3759	0.38	+0.4
3,797,552	+		GFF3759	0.38	-0.9
3,797,553	-		GFF3759	0.38	-1.1
3,797,560	-		GFF3759	0.38	-0.6
3,797,560	-		GFF3759	0.38	-0.6
3,797,562	+		GFF3759	0.38	-0.8
3,797,565	-		GFF3759	0.39	-1.0
3,797,567	+		GFF3759	0.39	-2.5
3,797,567	+		GFF3759	0.39	+0.9
3,797,575	-		GFF3759	0.39	-0.8
3,797,587	+		GFF3759	0.40	-2.1
3,797,596	-		GFF3759	0.41	+0.7
3,797,597	+		GFF3759	0.41	-1.4
3,797,597	+		GFF3759	0.41	+0.1
3,797,598	+		GFF3759	0.41	-0.2
3,797,598	+		GFF3759	0.41	-1.0
3,797,605	-		GFF3759	0.42	-2.5
3,797,606	-		GFF3759	0.42	-0.2
3,797,606	-		GFF3759	0.42	-1.3
3,797,606	-		GFF3759	0.42	-2.3
3,797,606	-		GFF3759	0.42	-0.1
3,797,606	-		GFF3759	0.42	-1.2
3,797,606	-		GFF3759	0.42	-0.8
3,797,628	-		GFF3759	0.43	-2.6
3,797,628	-		GFF3759	0.43	-0.5
3,797,638	-		GFF3759	0.44	-0.3
3,797,659	+		GFF3759	0.46	-0.1
3,797,710	+		GFF3759	0.50	-1.7
3,797,720	+		GFF3759	0.51	-0.7
3,797,734	+		GFF3759	0.52	+0.7
3,797,734	+		GFF3759	0.52	-0.3
3,797,734	+		GFF3759	0.52	-0.5
3,797,734	+		GFF3759	0.52	-1.5
3,797,734	+		GFF3759	0.52	-1.1
3,797,734	+		GFF3759	0.52	-0.7
3,797,742	-		GFF3759	0.52	-0.5
3,797,742	-		GFF3759	0.52	-0.6
3,797,742	-		GFF3759	0.52	-1.4
3,797,742	-		GFF3759	0.52	-0.8
3,797,742	-		GFF3759	0.52	+0.2
3,797,742	-		GFF3759	0.52	-0.3
3,797,742	-		GFF3759	0.52	-0.6
3,797,742	-		GFF3759	0.52	-0.7
3,797,742	-		GFF3759	0.52	-0.3
3,797,742	-		GFF3759	0.52	-1.3
3,797,742	-		GFF3759	0.52	-0.6
3,797,749	+		GFF3759	0.53	-0.1
3,797,756	+		GFF3759	0.53	-0.8
3,797,756	+		GFF3759	0.53	+1.7
3,797,757	-		GFF3759	0.53	-1.5
3,797,764	-		GFF3759	0.54	-1.0
3,797,768	+		GFF3759	0.54	-0.2
3,797,783	+		GFF3759	0.55	-0.9
3,797,783	-		GFF3759	0.55	+0.1
3,797,792	+		GFF3759	0.56	-0.3
3,797,792	+		GFF3759	0.56	-1.6
3,797,792	+		GFF3759	0.56	-0.5
3,797,792	+		GFF3759	0.56	-0.1
3,797,792	+		GFF3759	0.56	-1.3
3,797,800	-		GFF3759	0.57	-0.5
3,797,800	-		GFF3759	0.57	-0.7
3,797,800	-		GFF3759	0.57	-0.8
3,797,820	-		GFF3759	0.58	-1.0
3,797,830	+		GFF3759	0.59	-1.8
3,797,850	+		GFF3759	0.61	-0.8
3,797,888	+		GFF3759	0.63	-0.3
3,797,912	+		GFF3759	0.65	-0.3
3,797,920	-		GFF3759	0.66	-2.9
3,797,964	+		GFF3759	0.69	-0.9
3,797,964	+		GFF3759	0.69	-1.3
3,798,042	-		GFF3759	0.75	-1.9
3,798,049	+		GFF3759	0.76	-1.9
3,798,052	+		GFF3759	0.76	-0.5
3,798,054	+		GFF3759	0.76	-0.9
3,798,059	+		GFF3759	0.77	-0.1
3,798,067	-		GFF3759	0.77	+1.1
3,798,067	-		GFF3759	0.77	-2.0
3,798,083	+		GFF3759	0.79	-0.1
3,798,094	+		GFF3759	0.79	-0.0
3,798,102	-		GFF3759	0.80	-0.8
3,798,102	-		GFF3759	0.80	-0.5
3,798,154	-		GFF3759	0.84	-1.1
3,798,182	+		GFF3759	0.86	-1.0
3,798,182	+		GFF3759	0.86	-1.6
3,798,185	-		GFF3759	0.86	-1.0
3,798,187	+		GFF3759	0.87	-0.3
3,798,190	-		GFF3759	0.87	-0.5
3,798,215	+		GFF3759	0.89	-1.5
3,798,221	-		GFF3759	0.89	-0.2
3,798,281	+				-1.6
3,798,289	-				-1.5
3,798,308	+				+0.2
3,798,311	-				-1.4
3,798,311	-				+0.5
3,798,325	-				-2.5
3,798,331	-				-2.7
3,798,340	+				-1.9
3,798,367	+				-0.8
3,798,369	-				+0.6
3,798,380	-				-0.6
3,798,381	-				-3.2
3,798,395	-				-0.9
3,798,401	+				-0.8
3,798,414	-				+0.3
3,798,414	-				+0.1
3,798,427	+				-2.1
3,798,446	+				-0.5
3,798,446	+				-2.7
3,798,454	-				-0.5
3,798,458	-				-2.1
3,798,467	+		GFF3760	0.11	-0.5
3,798,480	-		GFF3760	0.12	-3.0
3,798,500	-		GFF3760	0.15	-2.5
3,798,511	-		GFF3760	0.16	-2.2
3,798,517	+		GFF3760	0.17	-0.4
3,798,562	+		GFF3760	0.22	-2.3
3,798,573	+		GFF3760	0.23	-2.7
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