Strain Fitness in Sphingobium sp. HT1-2 around GFF3711

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,754,789	-		GFF3709	0.80	-0.2
3,754,799	+		GFF3709	0.81	+0.9
3,754,811	+		GFF3709	0.83	+0.7
3,754,818	+		GFF3709	0.83	-0.1
3,754,819	-		GFF3709	0.84	-0.9
3,754,819	-		GFF3709	0.84	-0.2
3,754,830	+		GFF3709	0.85	-0.2
3,754,830	+		GFF3709	0.85	-0.7
3,754,830	+		GFF3709	0.85	-1.3
3,754,838	-		GFF3709	0.86	+0.4
3,754,838	-		GFF3709	0.86	-2.4
3,754,841	+		GFF3709	0.86	-0.4
3,754,854	+		GFF3709	0.88	-0.5
3,754,854	+		GFF3709	0.88	+0.2
3,754,862	-		GFF3709	0.89	+0.6
3,754,862	-		GFF3709	0.89	-0.7
3,754,862	-		GFF3709	0.89	-0.0
3,754,862	-		GFF3709	0.89	-1.1
3,754,914	-				-0.6
3,754,914	-				-0.8
3,754,917	+				+0.8
3,754,926	+				-0.4
3,754,934	-				+0.4
3,754,935	-				-0.2
3,754,941	-				-0.8
3,754,969	+				-1.1
3,754,979	+				-1.6
3,754,984	-				+0.6
3,755,047	+				-0.9
3,755,048	+				-0.7
3,755,054	+				-0.8
3,755,061	+				-0.2
3,755,069	+				-0.5
3,755,069	+				-0.1
3,755,069	-				+1.4
3,755,069	-				-0.6
3,755,077	-				-0.4
3,755,096	-		GFF3710	0.11	+1.3
3,755,098	+		GFF3710	0.11	+0.7
3,755,105	-		GFF3710	0.12	-0.8
3,755,106	-		GFF3710	0.12	-0.9
3,755,110	-		GFF3710	0.12	-0.6
3,755,115	-		GFF3710	0.13	-0.8
3,755,117	+		GFF3710	0.13	-0.8
3,755,117	+		GFF3710	0.13	-0.1
3,755,117	+		GFF3710	0.13	+0.6
3,755,117	+		GFF3710	0.13	-0.6
3,755,125	-		GFF3710	0.15	-0.0
3,755,125	-		GFF3710	0.15	+1.0
3,755,125	-		GFF3710	0.15	+0.8
3,755,145	+		GFF3710	0.17	-0.4
3,755,145	+		GFF3710	0.17	+1.6
3,755,171	-		GFF3710	0.21	-0.6
3,755,190	+		GFF3710	0.23	-0.1
3,755,206	+		GFF3710	0.25	-1.3
3,755,207	-		GFF3710	0.26	-1.0
3,755,214	-		GFF3710	0.26	+1.5
3,755,216	+		GFF3710	0.27	+0.6
3,755,226	+		GFF3710	0.28	+0.2
3,755,230	+		GFF3710	0.29	+0.1
3,755,230	+		GFF3710	0.29	+1.0
3,755,231	+		GFF3710	0.29	+0.2
3,755,231	+		GFF3710	0.29	+0.3
3,755,231	+		GFF3710	0.29	-1.4
3,755,231	+		GFF3710	0.29	-0.3
3,755,239	-		GFF3710	0.30	+0.1
3,755,239	-		GFF3710	0.30	+1.0
3,755,261	+		GFF3710	0.33	-0.5
3,755,271	+		GFF3710	0.34	-0.7
3,755,271	+		GFF3710	0.34	-0.6
3,755,271	+		GFF3710	0.34	+0.5
3,755,294	+		GFF3710	0.37	+0.4
3,755,312	+		GFF3710	0.40	+0.1
3,755,312	+		GFF3710	0.40	-0.0
3,755,322	+		GFF3710	0.41	-0.1
3,755,324	+		GFF3710	0.41	+0.4
3,755,324	+		GFF3710	0.41	+0.5
3,755,324	+		GFF3710	0.41	-0.6
3,755,332	-		GFF3710	0.42	-0.9
3,755,332	-		GFF3710	0.42	-0.6
3,755,333	+		GFF3710	0.42	+0.7
3,755,333	+		GFF3710	0.42	+0.1
3,755,333	+		GFF3710	0.42	-1.3
3,755,341	-		GFF3710	0.44	-0.5
3,755,341	-		GFF3710	0.44	+0.5
3,755,341	-		GFF3710	0.44	-0.1
3,755,363	+		GFF3710	0.47	+1.5
3,755,365	-		GFF3710	0.47	-1.0
3,755,365	-		GFF3710	0.47	+1.0
3,755,371	-		GFF3710	0.48	+0.5
3,755,371	-		GFF3710	0.48	-0.7
3,755,371	-		GFF3710	0.48	+0.7
3,755,381	-		GFF3710	0.49	+0.2
3,755,387	+		GFF3710	0.50	-0.4
3,755,387	+		GFF3710	0.50	+2.0
3,755,387	+		GFF3710	0.50	+0.2
3,755,394	-		GFF3710	0.51	-0.1
3,755,395	-		GFF3710	0.51	-0.5
3,755,395	-		GFF3710	0.51	-0.2
3,755,415	-		GFF3710	0.53	-0.5
3,755,419	+		GFF3710	0.54	+0.1
3,755,434	+		GFF3710	0.56	-1.4
3,755,434	+		GFF3710	0.56	+0.4
3,755,436	+		GFF3710	0.56	+0.2
3,755,442	+		GFF3710	0.57	-1.0
3,755,442	+		GFF3710	0.57	+0.9
3,755,442	+		GFF3710	0.57	-1.4
3,755,442	+		GFF3710	0.57	-1.4
3,755,449	-		GFF3710	0.58	-0.6
3,755,449	-		GFF3710	0.58	+0.6
3,755,449	-		GFF3710	0.58	-0.4
3,755,449	-		GFF3710	0.58	+0.5
3,755,450	-		GFF3710	0.58	-0.6
3,755,450	-		GFF3710	0.58	+0.1
3,755,450	-		GFF3710	0.58	-1.2
3,755,461	+		GFF3710	0.60	-0.0
3,755,469	-		GFF3710	0.61	-0.5
3,755,470	-		GFF3710	0.61	-0.9
3,755,477	-		GFF3710	0.62	+0.2
3,755,510	-		GFF3710	0.66	+0.3
3,755,510	-		GFF3710	0.66	-0.4
3,755,527	-		GFF3710	0.69	-0.7
3,755,573	-		GFF3710	0.75	-0.0
3,755,581	-		GFF3710	0.76	-0.4
3,755,581	-		GFF3710	0.76	-1.7
3,755,583	+		GFF3710	0.76	-0.6
3,755,583	+		GFF3710	0.76	-1.0
3,755,583	+		GFF3710	0.76	-1.9
3,755,585	+		GFF3710	0.76	+0.2
3,755,586	-		GFF3710	0.76	+0.4
3,755,590	+		GFF3710	0.77	+0.7
3,755,591	-		GFF3710	0.77	+0.2
3,755,591	-		GFF3710	0.77	+0.3
3,755,618	+		GFF3710	0.81	-0.2
3,755,626	-		GFF3710	0.82	-0.5
3,755,631	-		GFF3710	0.83	-0.7
3,755,669	+		GFF3710	0.88	-1.1
3,755,669	+		GFF3710	0.88	+0.8
3,755,677	-		GFF3710	0.89	-0.3
3,755,677	-		GFF3710	0.89	-0.5
3,755,677	-		GFF3710	0.89	-0.9
3,755,677	-		GFF3710	0.89	-0.4
3,755,713	-				+0.3
3,755,736	+				+0.8
3,755,749	-				+0.7
3,755,749	-				+0.3
3,755,751	-				+0.1
3,755,761	+				+0.5
3,755,762	+				+0.5
3,755,764	-				+0.6
3,755,770	-				+0.7
3,755,775	+				-0.1
3,755,776	+				-1.9
3,755,776	+				-0.3
3,755,776	-				-0.6
3,755,776	-				-0.4
3,755,778	-				-1.4
3,755,778	-				+0.0
3,755,778	-				+0.8
3,755,778	-				-0.1
3,755,778	-				-1.4
3,755,778	-				-0.9
3,755,778	-				+1.3
3,755,778	-				+1.2
3,755,783	-				+0.5
3,755,783	-				-0.2
3,755,783	-				-0.0
3,755,784	-				+0.3
3,755,789	-				-1.9
3,755,807	+				+0.6
3,755,807	+				-0.7
3,755,815	-				-0.3
3,755,827	-				-0.5
3,755,837	+				+2.0
3,755,838	+				+0.1
3,755,838	+				-1.0
3,755,846	-				+0.6
3,755,850	+				+0.2
3,755,855	+				+0.5
3,755,860	+				-0.3
3,755,863	-				+0.8
3,755,863	-				+0.7
3,755,865	+				-0.8
3,755,865	+				-0.0
3,755,880	+		GFF3711	0.11	-0.7
3,755,883	-		GFF3711	0.12	-2.3
3,755,897	+		GFF3711	0.13	-0.5
3,755,905	+		GFF3711	0.14	-0.9
3,755,912	-		GFF3711	0.15	-0.1
3,755,944	-		GFF3711	0.19	+0.7
3,755,952	+		GFF3711	0.20	-0.8
3,755,952	+		GFF3711	0.20	-1.6
3,755,990	+		GFF3711	0.24	+0.6
3,756,005	+		GFF3711	0.26	-1.2
3,756,018	+		GFF3711	0.28	+0.4
3,756,024	+		GFF3711	0.28	-0.3
3,756,027	+		GFF3711	0.29	-0.2
3,756,035	-		GFF3711	0.30	+0.0
3,756,035	-		GFF3711	0.30	-0.9
3,756,037	+		GFF3711	0.30	+0.1
3,756,037	+		GFF3711	0.30	-0.0
3,756,043	-		GFF3711	0.30	-0.4
3,756,045	+		GFF3711	0.31	-0.2
3,756,045	-		GFF3711	0.31	-0.4
3,756,045	-		GFF3711	0.31	-1.2
3,756,045	-		GFF3711	0.31	-0.8
3,756,045	-		GFF3711	0.31	+0.4
3,756,053	-		GFF3711	0.32	+0.1
3,756,060	+		GFF3711	0.33	-1.0
3,756,060	+		GFF3711	0.33	-1.2
3,756,068	-		GFF3711	0.33	-0.6
3,756,068	-		GFF3711	0.33	+0.5
3,756,072	+		GFF3711	0.34	-1.3
3,756,080	-		GFF3711	0.35	-1.3
3,756,099	+		GFF3711	0.37	-1.4
3,756,099	+		GFF3711	0.37	+0.2
3,756,103	-		GFF3711	0.38	-1.1
3,756,103	-		GFF3711	0.38	+0.4
3,756,107	-		GFF3711	0.38	+0.5
3,756,107	-		GFF3711	0.38	-0.4
3,756,109	+		GFF3711	0.38	-0.2
3,756,110	+		GFF3711	0.38	-0.9
3,756,110	+		GFF3711	0.38	+1.7
3,756,120	+		GFF3711	0.40	-0.1
3,756,120	+		GFF3711	0.40	+0.7
3,756,120	+		GFF3711	0.40	-0.0
3,756,120	+		GFF3711	0.40	-1.0
3,756,120	+		GFF3711	0.40	-2.1
3,756,120	+		GFF3711	0.40	-0.2
3,756,123	-		GFF3711	0.40	+0.2
3,756,128	+		GFF3711	0.41	-0.8
3,756,128	-		GFF3711	0.41	-0.3
3,756,128	-		GFF3711	0.41	+0.8
3,756,128	-		GFF3711	0.41	-0.6
3,756,128	-		GFF3711	0.41	+0.0
3,756,128	-		GFF3711	0.41	-0.1
3,756,130	+		GFF3711	0.41	+1.7
3,756,130	+		GFF3711	0.41	-1.5
3,756,130	+		GFF3711	0.41	+1.3
3,756,130	+		GFF3711	0.41	-0.3
3,756,130	+		GFF3711	0.41	-2.6
3,756,130	+		GFF3711	0.41	+0.3
3,756,130	+		GFF3711	0.41	+0.3
3,756,130	+		GFF3711	0.41	-0.0
3,756,130	+		GFF3711	0.41	+0.4
3,756,130	+		GFF3711	0.41	-0.4
3,756,130	+		GFF3711	0.41	-0.1
3,756,138	-		GFF3711	0.42	+0.3
3,756,138	-		GFF3711	0.42	-0.1
3,756,138	-		GFF3711	0.42	-0.9
3,756,138	-		GFF3711	0.42	+0.6
3,756,138	-		GFF3711	0.42	-0.4
3,756,138	-		GFF3711	0.42	+0.8
3,756,138	-		GFF3711	0.42	-0.6
3,756,138	-		GFF3711	0.42	-0.3
3,756,138	-		GFF3711	0.42	+0.0
3,756,138	-		GFF3711	0.42	+1.6
3,756,138	-		GFF3711	0.42	+0.3
3,756,138	-		GFF3711	0.42	+0.1
3,756,138	-		GFF3711	0.42	-1.6
3,756,157	+		GFF3711	0.44	+1.9
3,756,164	-		GFF3711	0.45	-1.3
3,756,174	-		GFF3711	0.46	+0.6
3,756,189	+		GFF3711	0.48	+0.6
3,756,193	+		GFF3711	0.48	-0.1
3,756,211	+		GFF3711	0.50	+1.2
3,756,228	+		GFF3711	0.52	-0.7
3,756,229	-		GFF3711	0.52	+0.6
3,756,238	+		GFF3711	0.54	-0.4
3,756,246	-		GFF3711	0.54	-0.2
3,756,248	+		GFF3711	0.55	-0.9
3,756,277	+		GFF3711	0.58	-0.8
3,756,278	-		GFF3711	0.58	+0.1
3,756,280	+		GFF3711	0.59	-0.4
3,756,317	-		GFF3711	0.63	-0.4
3,756,324	+		GFF3711	0.64	-0.1
3,756,325	+		GFF3711	0.64	+0.7
3,756,325	+		GFF3711	0.64	+0.1
3,756,325	+		GFF3711	0.64	-1.3
3,756,325	-		GFF3711	0.64	+0.2
3,756,332	-		GFF3711	0.65	-0.3
3,756,332	-		GFF3711	0.65	+0.7
3,756,351	+		GFF3711	0.67	+1.0
3,756,351	-		GFF3711	0.67	+0.8
3,756,351	-		GFF3711	0.67	-0.2
3,756,351	-		GFF3711	0.67	+0.0
3,756,359	+		GFF3711	0.68	-0.0
3,756,361	+		GFF3711	0.68	+0.3
3,756,369	-		GFF3711	0.69	-1.3
3,756,369	-		GFF3711	0.69	-0.3
3,756,375	-		GFF3711	0.70	+0.0
3,756,388	+		GFF3711	0.71	-1.3
3,756,406	+		GFF3711	0.73	-2.9
3,756,407	+		GFF3711	0.74	-0.6
3,756,413	+		GFF3711	0.74	-0.3
3,756,414	-		GFF3711	0.74	+0.9
3,756,421	-		GFF3711	0.75	+1.1
3,756,423	+		GFF3711	0.75	-1.1
3,756,423	+		GFF3711	0.75	-1.6
3,756,423	+		GFF3711	0.75	-0.9
3,756,425	-		GFF3711	0.76	+0.2
3,756,431	-		GFF3711	0.76	-0.4
3,756,432	+		GFF3711	0.76	-1.3
3,756,432	+		GFF3711	0.76	+0.2
3,756,437	+		GFF3711	0.77	-1.0
3,756,437	+		GFF3711	0.77	-1.4
3,756,437	+		GFF3711	0.77	-0.2
3,756,437	+		GFF3711	0.77	-2.4
3,756,437	+		GFF3711	0.77	+1.1
3,756,440	-		GFF3711	0.77	+1.5
3,756,443	-		GFF3711	0.78	-0.4
3,756,450	-		GFF3711	0.79	+0.1
3,756,450	-		GFF3711	0.79	+0.7
3,756,452	+		GFF3711	0.79	+0.7
3,756,460	-		GFF3711	0.80	-0.3
3,756,474	+		GFF3711	0.81	+0.3
3,756,474	+		GFF3711	0.81	+0.3
3,756,481	+		GFF3711	0.82	+0.1
3,756,482	+		GFF3711	0.82	+0.2
3,756,482	+		GFF3711	0.82	-0.2
3,756,482	-		GFF3711	0.82	-0.1
3,756,495	-		GFF3711	0.84	-0.0
3,756,500	+		GFF3711	0.85	+0.9
3,756,500	-		GFF3711	0.85	+1.5
3,756,521	+		GFF3711	0.87	+0.1
3,756,521	+		GFF3711	0.87	+0.8
3,756,529	-		GFF3711	0.88	+1.1
3,756,531	+		GFF3711	0.88	-0.1
3,756,531	+		GFF3711	0.88	+0.2
3,756,531	+		GFF3711	0.88	+1.1
3,756,573	-				+0.2
3,756,573	-				-2.2
3,756,573	-				-2.1
3,756,583	-				-0.7
3,756,589	-				-0.4
3,756,601	-				+0.3
3,756,612	+				-0.5
3,756,618	+				+0.5
3,756,626	-				-0.7
3,756,631	+				-1.3
3,756,632	+				-0.3
3,756,633	-				+1.0
3,756,640	-				+1.0
3,756,640	-				+0.3
3,756,657	+				+0.8
3,756,658	+				+0.6
3,756,663	+				+0.6
3,756,671	-				+0.8
3,756,671	-				-0.3
3,756,691	+				+0.3
3,756,698	+				-0.1
3,756,699	-				+0.3
3,756,704	-				+0.1
3,756,709	-				-0.1
3,756,718	+				-1.4
3,756,718	+				+0.5
3,756,718	+				-0.3
3,756,726	+				+0.5
3,756,726	-				-0.4
3,756,726	-				-1.4
3,756,726	-				-0.3
3,756,726	-				+0.7
3,756,726	-				+0.1
3,756,734	+		GFF3712	0.10	+1.1
3,756,770	+		GFF3712	0.16	-0.7
3,756,770	+		GFF3712	0.16	-1.1
3,756,778	-		GFF3712	0.17	-0.3
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