Strain Fitness in Sphingobium sp. HT1-2 around GFF3708

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,752,519	+		GFF3707	0.15	+0.3
3,752,521	+		GFF3707	0.15	+0.7
3,752,526	+		GFF3707	0.15	-0.6
3,752,526	+		GFF3707	0.15	-1.2
3,752,553	+		GFF3707	0.18	+0.6
3,752,553	+		GFF3707	0.18	+0.5
3,752,556	-		GFF3707	0.18	+0.3
3,752,557	-		GFF3707	0.18	-0.1
3,752,561	-		GFF3707	0.18	+1.0
3,752,566	-		GFF3707	0.19	+0.4
3,752,572	+		GFF3707	0.19	+1.2
3,752,576	-		GFF3707	0.20	-0.2
3,752,580	-		GFF3707	0.20	+0.9
3,752,585	-		GFF3707	0.21	+0.1
3,752,622	+		GFF3707	0.24	-0.2
3,752,631	-		GFF3707	0.25	+1.2
3,752,641	+		GFF3707	0.26	-0.1
3,752,649	-		GFF3707	0.26	-1.3
3,752,649	-		GFF3707	0.26	+0.5
3,752,669	+		GFF3707	0.28	-0.9
3,752,698	+		GFF3707	0.31	-0.3
3,752,698	+		GFF3707	0.31	-1.0
3,752,698	+		GFF3707	0.31	-0.2
3,752,706	-		GFF3707	0.31	+0.7
3,752,760	+		GFF3707	0.36	+0.4
3,752,772	+		GFF3707	0.37	-0.3
3,752,805	+		GFF3707	0.40	-0.0
3,752,839	-		GFF3707	0.43	-0.7
3,752,857	-		GFF3707	0.45	+1.4
3,752,866	+		GFF3707	0.46	-0.4
3,752,867	-		GFF3707	0.46	+1.1
3,752,872	-		GFF3707	0.46	-0.1
3,752,876	+		GFF3707	0.47	-0.4
3,752,876	+		GFF3707	0.47	+0.1
3,752,876	+		GFF3707	0.47	-0.6
3,752,876	+		GFF3707	0.47	-0.0
3,752,884	-		GFF3707	0.47	-0.3
3,752,884	-		GFF3707	0.47	-0.1
3,752,884	-		GFF3707	0.47	-0.0
3,752,886	+		GFF3707	0.47	-0.2
3,752,886	+		GFF3707	0.47	-0.9
3,752,886	+		GFF3707	0.47	+0.1
3,752,886	+		GFF3707	0.47	+0.2
3,752,886	+		GFF3707	0.47	+0.1
3,752,886	+		GFF3707	0.47	-1.2
3,752,886	+		GFF3707	0.47	-1.1
3,752,886	+		GFF3707	0.47	-0.4
3,752,886	+		GFF3707	0.47	+0.4
3,752,893	+		GFF3707	0.48	-0.0
3,752,893	+		GFF3707	0.48	-0.7
3,752,894	-		GFF3707	0.48	-0.0
3,752,894	-		GFF3707	0.48	-1.0
3,752,894	-		GFF3707	0.48	-1.0
3,752,894	-		GFF3707	0.48	+0.1
3,752,894	-		GFF3707	0.48	-2.7
3,752,894	-		GFF3707	0.48	+0.2
3,752,894	-		GFF3707	0.48	-1.7
3,752,894	-		GFF3707	0.48	-0.2
3,752,894	-		GFF3707	0.48	+1.4
3,752,901	-		GFF3707	0.49	-0.6
3,752,909	+		GFF3707	0.50	+0.4
3,752,911	+		GFF3707	0.50	-0.8
3,752,912	-		GFF3707	0.50	-0.0
3,752,919	-		GFF3707	0.50	-0.0
3,752,981	+		GFF3707	0.56	+0.9
3,753,002	+		GFF3707	0.58	+0.2
3,753,003	-		GFF3707	0.58	+0.4
3,753,010	-		GFF3707	0.59	+0.2
3,753,012	+		GFF3707	0.59	+1.0
3,753,016	-		GFF3707	0.59	+0.5
3,753,020	-		GFF3707	0.59	-0.1
3,753,020	-		GFF3707	0.59	+1.2
3,753,032	+		GFF3707	0.61	+0.6
3,753,032	+		GFF3707	0.61	-0.7
3,753,040	-		GFF3707	0.61	+0.7
3,753,045	-		GFF3707	0.62	-0.3
3,753,083	+		GFF3707	0.65	+0.7
3,753,110	+		GFF3707	0.68	-0.1
3,753,116	+		GFF3707	0.68	-0.7
3,753,116	+		GFF3707	0.68	+0.1
3,753,118	-		GFF3707	0.68	+1.2
3,753,124	-		GFF3707	0.69	-1.0
3,753,145	-		GFF3707	0.71	+0.2
3,753,149	-		GFF3707	0.71	-1.4
3,753,182	+		GFF3707	0.74	+1.2
3,753,182	+		GFF3707	0.74	-0.1
3,753,185	-		GFF3707	0.74	-0.3
3,753,185	-		GFF3707	0.74	-0.8
3,753,185	-		GFF3707	0.74	-0.4
3,753,214	-		GFF3707	0.77	+1.3
3,753,237	+		GFF3707	0.79	+0.1
3,753,238	+		GFF3707	0.79	+0.7
3,753,238	+		GFF3707	0.79	-0.6
3,753,250	+		GFF3707	0.80	-1.6
3,753,250	+		GFF3707	0.80	-0.1
3,753,271	+		GFF3707	0.82	-0.0
3,753,271	+		GFF3707	0.82	+0.9
3,753,273	-		GFF3707	0.82	+0.5
3,753,273	-		GFF3707	0.82	-0.4
3,753,293	-		GFF3707	0.84	+0.4
3,753,295	+		GFF3707	0.84	+0.6
3,753,303	-		GFF3707	0.85	+1.6
3,753,316	+		GFF3707	0.86	+0.6
3,753,323	-		GFF3707	0.87	+0.1
3,753,324	-		GFF3707	0.87	-0.9
3,753,365	-				+0.6
3,753,370	+				+0.2
3,753,378	-				+0.7
3,753,444	-				-0.0
3,753,486	-				-1.5
3,753,510	+				+0.5
3,753,518	-				+0.3
3,753,576	+		GFF3708	0.15	+0.1
3,753,576	+		GFF3708	0.15	+1.9
3,753,576	+		GFF3708	0.15	+0.4
3,753,576	+		GFF3708	0.15	+0.4
3,753,594	+		GFF3708	0.18	-1.6
3,753,603	+		GFF3708	0.19	-0.2
3,753,613	+		GFF3708	0.21	-0.3
3,753,620	+		GFF3708	0.22	+0.1
3,753,626	-		GFF3708	0.23	-0.7
3,753,667	-		GFF3708	0.29	-0.3
3,753,669	+		GFF3708	0.29	+0.4
3,753,676	+		GFF3708	0.30	-0.1
3,753,676	+		GFF3708	0.30	+1.2
3,753,676	+		GFF3708	0.30	+0.4
3,753,676	+		GFF3708	0.30	+0.3
3,753,678	-		GFF3708	0.30	-1.3
3,753,681	+		GFF3708	0.31	+2.5
3,753,700	+		GFF3708	0.34	-1.2
3,753,743	-		GFF3708	0.40	+0.4
3,753,750	-		GFF3708	0.41	+0.5
3,753,776	+		GFF3708	0.45	+0.4
3,753,784	-		GFF3708	0.46	+0.3
3,753,808	+		GFF3708	0.49	-0.2
3,753,809	-		GFF3708	0.50	-0.2
3,753,816	-		GFF3708	0.51	-0.2
3,753,817	+		GFF3708	0.51	+0.1
3,753,817	+		GFF3708	0.51	+0.3
3,753,817	+		GFF3708	0.51	+0.4
3,753,843	-		GFF3708	0.55	+1.1
3,753,845	+		GFF3708	0.55	+0.7
3,753,845	+		GFF3708	0.55	-0.3
3,753,845	+		GFF3708	0.55	-0.7
3,753,845	+		GFF3708	0.55	+1.4
3,753,845	+		GFF3708	0.55	-0.1
3,753,853	-		GFF3708	0.56	+0.5
3,753,853	-		GFF3708	0.56	+0.7
3,753,853	-		GFF3708	0.56	+0.6
3,753,853	-		GFF3708	0.56	-0.2
3,753,853	-		GFF3708	0.56	-1.2
3,753,853	-		GFF3708	0.56	+0.6
3,753,853	-		GFF3708	0.56	-0.1
3,753,853	-		GFF3708	0.56	+0.7
3,753,853	-		GFF3708	0.56	+0.4
3,753,853	-		GFF3708	0.56	+0.3
3,753,878	-		GFF3708	0.60	-0.3
3,753,896	-		GFF3708	0.62	+0.3
3,753,896	-		GFF3708	0.62	+0.3
3,753,902	+		GFF3708	0.63	-0.5
3,753,928	-		GFF3708	0.67	+0.8
3,753,963	+		GFF3708	0.72	-0.7
3,753,963	+		GFF3708	0.72	-0.7
3,753,971	-		GFF3708	0.73	-0.4
3,753,971	-		GFF3708	0.73	+0.4
3,754,009	-		GFF3708	0.79	-0.9
3,754,102	+				-0.7
3,754,102	+				-0.0
3,754,110	+				+0.1
3,754,110	-				-0.5
3,754,119	-				-1.6
3,754,122	+				+0.6
3,754,166	+				+0.4
3,754,191	-				+0.7
3,754,200	+				-0.8
3,754,200	+				-0.0
3,754,208	-				+1.7
3,754,218	-				-0.2
3,754,223	-				-1.3
3,754,230	-				+0.0
3,754,230	-				+0.6
3,754,233	-				+0.2
3,754,239	+		GFF3709	0.10	-0.3
3,754,256	-		GFF3709	0.12	-0.3
3,754,277	-		GFF3709	0.15	-0.2
3,754,277	-		GFF3709	0.15	-0.2
3,754,307	-		GFF3709	0.19	+0.2
3,754,337	+		GFF3709	0.22	+0.5
3,754,396	-		GFF3709	0.30	+0.1
3,754,398	-		GFF3709	0.30	+1.0
3,754,421	-		GFF3709	0.33	+0.2
3,754,459	-		GFF3709	0.38	+0.7
3,754,460	-		GFF3709	0.38	+1.0
3,754,479	+		GFF3709	0.40	-1.6
3,754,487	-		GFF3709	0.41	-0.6
3,754,514	-		GFF3709	0.45	+0.2
3,754,549	+		GFF3709	0.49	+0.1
3,754,556	+		GFF3709	0.50	+0.7
3,754,564	-		GFF3709	0.51	+0.5
3,754,600	+		GFF3709	0.56	+0.3
3,754,601	+		GFF3709	0.56	-0.1
3,754,601	+		GFF3709	0.56	+0.6
3,754,601	+		GFF3709	0.56	-0.3
3,754,601	+		GFF3709	0.56	+1.1
3,754,601	+		GFF3709	0.56	+1.2
3,754,601	+		GFF3709	0.56	+0.9
3,754,601	+		GFF3709	0.56	-0.5
3,754,601	+		GFF3709	0.56	-0.5
3,754,608	-		GFF3709	0.57	-0.1
3,754,608	-		GFF3709	0.57	+0.8
3,754,608	-		GFF3709	0.57	+0.2
3,754,609	-		GFF3709	0.57	-0.8
3,754,609	-		GFF3709	0.57	+0.7
3,754,609	-		GFF3709	0.57	-0.3
3,754,609	-		GFF3709	0.57	-0.5
3,754,641	-		GFF3709	0.61	-0.8
3,754,641	-		GFF3709	0.61	-1.6
3,754,659	+		GFF3709	0.63	+0.1
3,754,662	+		GFF3709	0.64	-1.6
3,754,664	+		GFF3709	0.64	-1.5
3,754,667	-		GFF3709	0.64	-0.9
3,754,672	-		GFF3709	0.65	-0.2
3,754,672	-		GFF3709	0.65	-0.4
3,754,672	-		GFF3709	0.65	-0.4
3,754,672	-		GFF3709	0.65	+0.3
3,754,672	-		GFF3709	0.65	+0.2
3,754,697	-		GFF3709	0.68	+0.5
3,754,697	-		GFF3709	0.68	+0.6
3,754,709	-		GFF3709	0.70	+1.0
3,754,723	+		GFF3709	0.71	-0.3
3,754,742	-		GFF3709	0.74	-0.3
3,754,746	-		GFF3709	0.74	+1.0
3,754,752	-		GFF3709	0.75	-0.0
3,754,763	-		GFF3709	0.76	-0.1
3,754,799	+		GFF3709	0.81	+1.0
3,754,818	+		GFF3709	0.83	+0.5
3,754,819	-		GFF3709	0.84	-0.8
3,754,830	+		GFF3709	0.85	-0.0
3,754,838	-		GFF3709	0.86	-2.3
3,754,838	-		GFF3709	0.86	+0.8
3,754,854	+		GFF3709	0.88	+0.3
3,754,862	-		GFF3709	0.89	-0.6
3,754,862	-		GFF3709	0.89	-1.0
3,754,914	-				-0.7
3,754,917	+				+1.0
3,754,926	+				-0.3
3,754,932	-				+0.7
3,754,969	+				-0.9
3,754,979	+				-1.5
3,754,984	-				+0.7
3,754,984	-				+1.1
3,755,054	+				-0.6
3,755,061	+				-0.1
3,755,069	-				+1.5
3,755,096	-		GFF3710	0.11	+1.4
3,755,098	+		GFF3710	0.11	+0.8
3,755,106	-		GFF3710	0.12	-0.8
3,755,115	-		GFF3710	0.13	-0.7
3,755,117	+		GFF3710	0.13	+0.0
3,755,117	+		GFF3710	0.13	+0.7
3,755,117	+		GFF3710	0.13	-0.5
3,755,125	-		GFF3710	0.15	+1.1
3,755,125	-		GFF3710	0.15	+1.6
3,755,145	+		GFF3710	0.17	-0.3
3,755,145	+		GFF3710	0.17	+1.7