Strain Fitness in Sphingobium sp. HT1-2 around GFF3619

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,665,984	+		GFF3617	0.55	+0.6
3,665,984	-		GFF3617	0.55	-0.3
3,666,017	+		GFF3617	0.57	-1.8
3,666,048	-		GFF3617	0.59	-0.4
3,666,053	-		GFF3617	0.59	-1.1
3,666,107	-		GFF3617	0.63	+0.0
3,666,116	+		GFF3617	0.63	-0.6
3,666,116	+		GFF3617	0.63	+1.2
3,666,135	-		GFF3617	0.64	+0.2
3,666,154	+		GFF3617	0.66	+0.6
3,666,155	-		GFF3617	0.66	+0.2
3,666,157	-		GFF3617	0.66	-1.4
3,666,185	+		GFF3617	0.68	-0.2
3,666,185	+		GFF3617	0.68	-0.4
3,666,193	-		GFF3617	0.68	+0.2
3,666,202	+		GFF3617	0.69	+0.3
3,666,202	+		GFF3617	0.69	-0.8
3,666,202	+		GFF3617	0.69	-0.8
3,666,202	+		GFF3617	0.69	-0.6
3,666,202	+		GFF3617	0.69	+0.3
3,666,202	+		GFF3617	0.69	+0.6
3,666,210	-		GFF3617	0.69	-0.6
3,666,210	-		GFF3617	0.69	+0.8
3,666,212	+		GFF3617	0.69	-0.0
3,666,222	+		GFF3617	0.70	-1.1
3,666,267	+		GFF3617	0.73	-0.5
3,666,275	-		GFF3617	0.73	-1.0
3,666,356	-		GFF3617	0.78	-1.0
3,666,369	+		GFF3617	0.79	-0.1
3,666,369	+		GFF3617	0.79	+0.8
3,666,370	-		GFF3617	0.79	+0.0
3,666,377	-		GFF3617	0.80	-0.3
3,666,377	-		GFF3617	0.80	+0.4
3,666,377	-		GFF3617	0.80	+0.2
3,666,377	-		GFF3617	0.80	-1.3
3,666,381	+		GFF3617	0.80	+0.2
3,666,381	+		GFF3617	0.80	+0.2
3,666,381	+		GFF3617	0.80	+1.0
3,666,387	-		GFF3617	0.80	-0.9
3,666,389	-		GFF3617	0.81	-0.1
3,666,412	+		GFF3617	0.82	-0.4
3,666,430	+		GFF3617	0.83	-0.5
3,666,430	+		GFF3617	0.83	+0.4
3,666,430	+		GFF3617	0.83	-0.1
3,666,430	+		GFF3617	0.83	-1.5
3,666,430	+		GFF3617	0.83	-0.6
3,666,435	+		GFF3617	0.83	+0.9
3,666,435	+		GFF3617	0.83	-2.2
3,666,435	+		GFF3617	0.83	-3.2
3,666,435	+		GFF3617	0.83	-0.1
3,666,438	-		GFF3617	0.84	-0.9
3,666,438	-		GFF3617	0.84	-0.3
3,666,443	-		GFF3617	0.84	+1.2
3,666,443	-		GFF3617	0.84	-3.0
3,666,443	-		GFF3617	0.84	-1.8
3,666,443	-		GFF3617	0.84	-1.4
3,666,443	-		GFF3617	0.84	+0.3
3,666,463	+		GFF3617	0.85	-0.4
3,666,463	+		GFF3617	0.85	+0.2
3,666,463	+		GFF3617	0.85	-1.3
3,666,466	+		GFF3617	0.85	-1.0
3,666,468	+		GFF3617	0.86	-2.3
3,666,471	-		GFF3617	0.86	+0.2
3,666,476	-		GFF3617	0.86	-1.0
3,666,476	-		GFF3617	0.86	-0.5
3,666,476	-		GFF3617	0.86	+0.4
3,666,476	-		GFF3617	0.86	+0.8
3,666,476	-		GFF3617	0.86	-2.4
3,666,476	-		GFF3617	0.86	-2.5
3,666,489	+		GFF3617	0.87	+0.1
3,666,489	+		GFF3617	0.87	+0.1
3,666,489	+		GFF3617	0.87	-1.3
3,666,492	-		GFF3617	0.87	+0.2
3,666,497	-		GFF3617	0.87	+0.3
3,666,497	-		GFF3617	0.87	-0.7
3,666,534	+		GFF3617	0.90	-0.3
3,666,547	+				-1.4
3,666,547	+				-1.6
3,666,548	+				+0.6
3,666,548	+				-1.7
3,666,555	-				+0.4
3,666,556	-				-0.3
3,666,575	+				-1.1
3,666,575	-				-0.7
3,666,577	-				+0.5
3,666,577	-				+0.7
3,666,585	-				+0.9
3,666,612	+				+0.9
3,666,622	+				+0.8
3,666,627	+				+1.0
3,666,627	+				+0.3
3,666,627	+				-0.7
3,666,627	+				-0.1
3,666,627	+				+0.9
3,666,627	+				+0.6
3,666,627	+				-1.8
3,666,627	+				-0.9
3,666,635	-				-1.6
3,666,635	-				-0.2
3,666,635	-				-0.2
3,666,635	-				-1.1
3,666,635	-				-1.0
3,666,647	+				-0.6
3,666,658	-				-0.5
3,666,698	+				-1.2
3,666,703	+				-0.8
3,666,706	-				+0.8
3,666,727	+		GFF3618	0.13	+0.0
3,666,727	+		GFF3618	0.13	+0.7
3,666,748	-		GFF3618	0.20	-0.6
3,666,762	+		GFF3618	0.25	+0.3
3,666,767	+		GFF3618	0.26	-0.4
3,666,772	+		GFF3618	0.28	+0.1
3,666,772	+		GFF3618	0.28	+0.1
3,666,775	-		GFF3618	0.29	-1.3
3,666,831	+		GFF3618	0.48	-0.3
3,666,831	-		GFF3618	0.48	+0.4
3,666,831	-		GFF3618	0.48	+0.8
3,666,836	-		GFF3618	0.50	-0.6
3,666,838	+		GFF3618	0.51	+0.3
3,666,841	-		GFF3618	0.52	+1.5
3,666,841	-		GFF3618	0.52	-0.0
3,666,841	-		GFF3618	0.52	-1.5
3,666,853	+		GFF3618	0.56	-0.3
3,666,858	+		GFF3618	0.58	-0.2
3,666,859	+		GFF3618	0.58	+0.2
3,666,866	-		GFF3618	0.60	+0.1
3,666,867	-		GFF3618	0.61	+0.1
3,666,867	-		GFF3618	0.61	+0.5
3,666,867	-		GFF3618	0.61	-0.1
3,666,869	+		GFF3618	0.62	+1.3
3,666,870	+		GFF3618	0.62	-0.5
3,666,873	-		GFF3618	0.63	-0.0
3,666,876	+		GFF3618	0.64	-1.6
3,666,878	-		GFF3618	0.65	+0.4
3,666,929	-		GFF3618	0.82	+0.7
3,666,956	+				-0.2
3,666,958	+				+0.9
3,666,964	-				-1.0
3,666,985	+				+0.9
3,666,985	-				+0.3
3,666,993	-				+0.3
3,667,012	+		GFF3619	0.12	-2.0
3,667,020	-		GFF3619	0.14	-1.5
3,667,020	-		GFF3619	0.14	-1.5
3,667,027	+		GFF3619	0.17	+0.2
3,667,028	+		GFF3619	0.17	+1.2
3,667,032	+		GFF3619	0.19	+0.2
3,667,069	+		GFF3619	0.31	-1.6
3,667,072	-		GFF3619	0.32	+0.3
3,667,074	+		GFF3619	0.33	-0.6
3,667,102	+		GFF3619	0.42	-2.3
3,667,110	-		GFF3619	0.45	-0.1
3,667,133	+		GFF3619	0.53	-0.3
3,667,134	+		GFF3619	0.53	+0.4
3,667,134	+		GFF3619	0.53	-0.5
3,667,134	+		GFF3619	0.53	-1.7
3,667,134	+		GFF3619	0.53	-1.0
3,667,139	+		GFF3619	0.55	+0.0
3,667,140	+		GFF3619	0.55	-1.6
3,667,141	-		GFF3619	0.55	+0.1
3,667,142	-		GFF3619	0.56	-1.0
3,667,142	-		GFF3619	0.56	-1.5
3,667,142	-		GFF3619	0.56	-2.2
3,667,142	-		GFF3619	0.56	-0.3
3,667,157	-		GFF3619	0.61	-0.2
3,667,180	+		GFF3619	0.68	+0.4
3,667,197	+		GFF3619	0.74	+0.2
3,667,197	+		GFF3619	0.74	+0.1
3,667,197	+		GFF3619	0.74	-0.6
3,667,197	+		GFF3619	0.74	-1.5
3,667,197	+		GFF3619	0.74	-0.8
3,667,197	+		GFF3619	0.74	-2.1
3,667,197	+		GFF3619	0.74	-0.4
3,667,197	+		GFF3619	0.74	+0.6
3,667,197	+		GFF3619	0.74	-0.5
3,667,197	+		GFF3619	0.74	+0.1
3,667,197	+		GFF3619	0.74	-0.7
3,667,197	+		GFF3619	0.74	-0.3
3,667,197	+		GFF3619	0.74	-2.5
3,667,197	+		GFF3619	0.74	-0.3
3,667,197	+		GFF3619	0.74	-0.8
3,667,197	+		GFF3619	0.74	+0.7
3,667,197	+		GFF3619	0.74	+0.1
3,667,197	+		GFF3619	0.74	-1.4
3,667,197	+		GFF3619	0.74	-0.3
3,667,197	+		GFF3619	0.74	+1.2
3,667,197	+		GFF3619	0.74	-1.8
3,667,205	-		GFF3619	0.77	-1.5
3,667,205	-		GFF3619	0.77	+0.3
3,667,205	-		GFF3619	0.77	+0.7
3,667,205	-		GFF3619	0.77	-0.0
3,667,205	-		GFF3619	0.77	+1.0
3,667,205	-		GFF3619	0.77	+0.0
3,667,205	-		GFF3619	0.77	-1.1
3,667,205	-		GFF3619	0.77	-0.2
3,667,205	-		GFF3619	0.77	+1.4
3,667,205	-		GFF3619	0.77	+0.4
3,667,205	-		GFF3619	0.77	-1.0
3,667,205	-		GFF3619	0.77	+0.4
3,667,205	-		GFF3619	0.77	-1.2
3,667,205	-		GFF3619	0.77	+0.4
3,667,205	-		GFF3619	0.77	+0.8
3,667,205	-		GFF3619	0.77	+1.3
3,667,205	-		GFF3619	0.77	-0.9
3,667,205	-		GFF3619	0.77	+2.0
3,667,205	-		GFF3619	0.77	-0.0
3,667,205	-		GFF3619	0.77	-1.1
3,667,205	-		GFF3619	0.77	-0.4
3,667,205	-		GFF3619	0.77	-0.4
3,667,205	-		GFF3619	0.77	-0.9
3,667,205	-		GFF3619	0.77	-2.0
3,667,207	+		GFF3619	0.77	-1.1
3,667,207	+		GFF3619	0.77	-0.9
3,667,215	-		GFF3619	0.80	+0.7
3,667,215	-		GFF3619	0.80	-1.0
3,667,234	-		GFF3619	0.87	-1.9
3,667,245	+				-0.5
3,667,245	+				+0.5
3,667,245	+				+1.0
3,667,245	+				-1.0
3,667,245	+				-2.6
3,667,245	+				-0.5
3,667,245	+				-1.2
3,667,245	+				+1.2
3,667,245	+				-2.0
3,667,245	+				-1.3
3,667,245	+				-0.7
3,667,245	+				-0.3
3,667,245	+				-0.3
3,667,245	+				-0.2
3,667,247	+				+1.7
3,667,250	-				-2.1
3,667,253	-				-0.3
3,667,253	-				+0.4
3,667,253	-				-0.1
3,667,253	-				-1.1
3,667,253	-				+1.2
3,667,253	-				-0.1
3,667,253	-				+0.1
3,667,253	-				+0.4
3,667,253	-				-0.8
3,667,253	-				-1.9
3,667,253	-				-2.4
3,667,253	-				-0.7
3,667,253	-				+0.2
3,667,253	-				-1.4
3,667,253	-				-1.0
3,667,253	-				-1.1
3,667,253	-				-0.3
3,667,253	-				-1.3
3,667,253	-				+0.8
3,667,253	-				-0.5
3,667,253	-				-1.4
3,667,253	-				-0.5
3,667,253	-				+0.5
3,667,253	-				-0.4
3,667,253	-				-1.8
3,667,272	+				-0.9
3,667,272	+				-2.6
3,667,288	+				+0.0
3,667,295	+				+0.6
3,667,295	+				-1.7
3,667,296	-				-1.5
3,667,311	-				-0.3
3,667,321	+				+0.1
3,667,321	+				-0.8
3,667,329	-				+0.6
3,667,337	-				+0.0
3,667,337	-				-2.4
3,667,337	-				+0.9
3,667,338	+				-0.7
3,667,338	+				-1.8
3,667,338	+				-2.0
3,667,346	-				-1.3
3,667,346	-				+0.6
3,667,346	-				+0.6
3,667,353	-		GFF3620	0.10	-1.0
3,667,361	-		GFF3620	0.11	+0.8
3,667,369	-		GFF3620	0.12	+0.1
3,667,406	+		GFF3620	0.17	+0.7
3,667,406	+		GFF3620	0.17	-0.9
3,667,406	+		GFF3620	0.17	-1.0
3,667,406	+		GFF3620	0.17	-0.1
3,667,453	+		GFF3620	0.23	-1.5
3,667,458	+		GFF3620	0.24	-0.3
3,667,458	+		GFF3620	0.24	-0.4
3,667,458	+		GFF3620	0.24	-0.7
3,667,466	-		GFF3620	0.25	+0.4
3,667,466	-		GFF3620	0.25	-0.7
3,667,466	-		GFF3620	0.25	+1.1
3,667,466	-		GFF3620	0.25	-0.2
3,667,466	-		GFF3620	0.25	-0.2
3,667,468	-		GFF3620	0.25	-0.2
3,667,548	+		GFF3620	0.36	-2.5
3,667,551	-		GFF3620	0.36	+0.8
3,667,551	-		GFF3620	0.36	-0.6
3,667,553	+		GFF3620	0.36	-0.0
3,667,553	+		GFF3620	0.36	+0.6
3,667,553	+		GFF3620	0.36	-1.9
3,667,553	+		GFF3620	0.36	+0.2
3,667,553	+		GFF3620	0.36	-1.0
3,667,555	+		GFF3620	0.37	-1.7
3,667,561	-		GFF3620	0.37	+0.2
3,667,561	-		GFF3620	0.37	-0.8
3,667,561	-		GFF3620	0.37	-0.4
3,667,561	-		GFF3620	0.37	+0.1
3,667,561	-		GFF3620	0.37	+0.2
3,667,561	-		GFF3620	0.37	-0.4
3,667,584	+		GFF3620	0.40	-0.9
3,667,592	-		GFF3620	0.41	+1.0
3,667,592	-		GFF3620	0.41	+1.5
3,667,592	-		GFF3620	0.41	+0.7
3,667,614	+		GFF3620	0.44	-1.4
3,667,640	+		GFF3620	0.48	-1.3
3,667,645	-		GFF3620	0.48	+0.6
3,667,645	-		GFF3620	0.48	-0.2
3,667,667	-		GFF3620	0.51	-2.4
3,667,667	-		GFF3620	0.51	-1.4
3,667,677	-		GFF3620	0.53	+1.7
3,667,695	+		GFF3620	0.55	-2.2
3,667,713	+		GFF3620	0.57	+0.2
3,667,769	+		GFF3620	0.65	-0.4
3,667,769	+		GFF3620	0.65	+0.2
3,667,769	+		GFF3620	0.65	-0.9
3,667,771	-		GFF3620	0.65	-0.8
3,667,776	-		GFF3620	0.66	-1.2
3,667,782	-		GFF3620	0.66	-0.6
3,667,782	-		GFF3620	0.66	+0.1
3,667,782	-		GFF3620	0.66	-1.2
3,667,792	-		GFF3620	0.68	-0.4
3,667,792	-		GFF3620	0.68	+0.1
3,667,794	+		GFF3620	0.68	+0.5
3,667,805	+		GFF3620	0.69	-2.7
3,667,808	-		GFF3620	0.70	+0.3
3,667,843	+		GFF3620	0.74	+0.2
3,667,851	-		GFF3620	0.75	-0.2
3,667,851	-		GFF3620	0.75	+0.7
3,667,858	+		GFF3620	0.76	+1.5
3,667,866	-		GFF3620	0.77	-3.0
3,667,866	-		GFF3620	0.77	-0.6
3,667,886	-		GFF3620	0.80	-1.3
3,667,893	+		GFF3620	0.81	+1.2
3,667,893	+		GFF3620	0.81	+1.7
3,667,893	+		GFF3620	0.81	-1.3
3,667,933	+		GFF3620	0.86	-0.6
3,667,933	+		GFF3620	0.86	-0.6
3,667,933	+		GFF3620	0.86	-0.4
3,667,933	+		GFF3620	0.86	-0.6
3,667,933	+		GFF3620	0.86	-1.2
3,667,933	-		GFF3620	0.86	-0.5
3,667,941	-		GFF3620	0.87	+0.5
3,667,944	+		GFF3620	0.88	-0.2
3,667,944	+		GFF3620	0.88	+0.5
3,667,944	+		GFF3620	0.88	-0.1
3,667,946	-		GFF3620	0.88	-0.5
3,667,947	-		GFF3620	0.88	-0.7
3,667,952	-		GFF3620	0.89	+0.3
3,667,981	+				-0.4
3,667,997	+				-0.1
3,668,005	-				-0.0
3,668,005	-				+0.1
3,668,005	-				-1.3
3,668,005	-				-0.3
3,668,005	-				-2.0
3,668,005	-				+1.4
3,668,005	-				+0.5
3,668,028	+				-0.0
3,668,057	-				+1.4
3,668,074	-				+0.1
3,668,099	+				-0.8
3,668,111	+				-0.7
3,668,111	+				-1.3
3,668,111	+				-1.3
3,668,111	+				-0.3
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3,668,119	-				-0.0
3,668,119	-				-1.1
3,668,119	-				-0.2
3,668,119	-				+0.3
3,668,142	+				-0.5
3,668,147	+				-0.6
3,668,152	+				-1.3
3,668,152	+				-0.1
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3,668,157	+				-0.0
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3,668,160	-				-1.5
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3,668,165	+				-0.5
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3,668,212	+				-0.0
3,668,212	+				-1.2
3,668,227	+				-1.4
3,668,249	+		GFF3621	0.10	+0.9
3,668,258	-		GFF3621	0.11	+0.5