Strain Fitness in Sphingobium sp. HT1-2 around GFF3611

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,657,345	-		GFF3609	0.32	-2.7
3,657,406	+		GFF3609	0.47	-1.0
3,657,428	+		GFF3609	0.52	+0.1
3,657,428	+		GFF3609	0.52	-0.4
3,657,436	-		GFF3609	0.54	-0.9
3,657,436	-		GFF3609	0.54	+1.1
3,657,436	-		GFF3609	0.54	-0.0
3,657,436	-		GFF3609	0.54	+0.4
3,657,527	+		GFF3609	0.76	-0.1
3,657,534	+		GFF3609	0.78	-0.9
3,657,534	+		GFF3609	0.78	+0.7
3,657,535	-		GFF3609	0.78	-0.3
3,657,543	+		GFF3609	0.80	-1.7
3,657,553	+		GFF3609	0.83	+0.7
3,657,579	+		GFF3609	0.89	+0.8
3,657,622	+				+1.6
3,657,646	-				+0.9
3,657,662	-				-1.0
3,657,667	-				+1.8
3,657,788	-		GFF3610	0.24	-0.0
3,657,799	-		GFF3610	0.26	-0.7
3,657,884	+		GFF3610	0.37	+2.0
3,657,889	+		GFF3610	0.38	+0.3
3,657,901	-		GFF3610	0.39	+2.3
3,657,903	-		GFF3610	0.40	-0.9
3,658,250	+		GFF3610	0.87	+0.4
3,658,310	+				+0.5
3,658,317	-				-1.0
3,658,323	-				-0.2
3,658,323	-				+0.8
3,658,334	+				-0.2
3,658,334	+				-0.2
3,658,334	+				+0.3
3,658,334	+				-0.8
3,658,334	+				-1.0
3,658,334	+				+1.2
3,658,334	+				+1.6
3,658,334	+				+1.4
3,658,340	+				-0.2
3,658,342	+				+1.2
3,658,342	-				+0.2
3,658,342	-				-1.2
3,658,342	-				-2.1
3,658,342	-				-1.5
3,658,342	-				-1.4
3,658,342	-				+0.3
3,658,342	-				-0.7
3,658,342	-				-0.5
3,658,350	-				-0.5
3,658,448	+				-1.1
3,658,456	-				-1.2
3,658,456	-				-0.1
3,658,456	-				-1.7
3,658,456	-				-1.2
3,658,471	+				+0.9
3,658,478	-				-0.3
3,658,478	-				-1.1
3,658,486	-				-1.0
3,658,497	+				-1.3
3,658,538	+		GFF3611	0.10	-0.2
3,658,538	+		GFF3611	0.10	-0.6
3,658,538	+		GFF3611	0.10	-0.0
3,658,538	+		GFF3611	0.10	-0.4
3,658,546	-		GFF3611	0.10	-0.0
3,658,546	-		GFF3611	0.10	-1.6
3,658,546	-		GFF3611	0.10	-2.7
3,658,546	-		GFF3611	0.10	+0.3
3,658,562	-		GFF3611	0.11	-1.1
3,658,586	+		GFF3611	0.12	-0.1
3,658,589	+		GFF3611	0.13	-0.6
3,658,589	+		GFF3611	0.13	-2.1
3,658,597	-		GFF3611	0.13	-0.7
3,658,597	-		GFF3611	0.13	-1.0
3,658,597	-		GFF3611	0.13	+1.8
3,658,597	-		GFF3611	0.13	-0.3
3,658,597	-		GFF3611	0.13	+0.2
3,658,597	-		GFF3611	0.13	-1.4
3,658,603	-		GFF3611	0.13	-0.3
3,658,603	-		GFF3611	0.13	+0.5
3,658,642	+		GFF3611	0.15	+0.8
3,658,650	-		GFF3611	0.16	-0.4
3,658,657	+		GFF3611	0.16	-0.3
3,658,657	+		GFF3611	0.16	-0.4
3,658,664	+		GFF3611	0.16	+1.2
3,658,672	-		GFF3611	0.17	-0.0
3,658,675	-		GFF3611	0.17	+0.4
3,658,694	+		GFF3611	0.18	-0.7
3,658,778	+		GFF3611	0.22	-0.1
3,658,837	+		GFF3611	0.25	+0.5
3,658,874	+		GFF3611	0.27	-1.1
3,658,880	+		GFF3611	0.27	-0.9
3,658,888	-		GFF3611	0.27	-0.6
3,658,888	-		GFF3611	0.27	+1.2
3,658,888	-		GFF3611	0.27	-0.1
3,658,892	-		GFF3611	0.28	-0.0
3,658,892	-		GFF3611	0.28	-1.1
3,658,905	+		GFF3611	0.28	-0.3
3,658,911	+		GFF3611	0.29	-2.2
3,658,918	-		GFF3611	0.29	-2.3
3,658,920	+		GFF3611	0.29	-2.5
3,658,971	+		GFF3611	0.32	-0.8
3,658,983	-		GFF3611	0.32	+0.6
3,658,995	-		GFF3611	0.33	+0.0
3,658,995	-		GFF3611	0.33	-0.9
3,658,995	-		GFF3611	0.33	+0.3
3,658,995	-		GFF3611	0.33	+0.0
3,659,010	-		GFF3611	0.33	+0.9
3,659,035	+		GFF3611	0.35	-0.2
3,659,059	+		GFF3611	0.36	-0.6
3,659,059	+		GFF3611	0.36	-0.4
3,659,059	+		GFF3611	0.36	-1.2
3,659,062	-		GFF3611	0.36	-1.1
3,659,067	-		GFF3611	0.36	-0.2
3,659,067	-		GFF3611	0.36	-1.7
3,659,089	-		GFF3611	0.37	+1.8
3,659,091	+		GFF3611	0.38	-0.7
3,659,140	+		GFF3611	0.40	+0.2
3,659,140	+		GFF3611	0.40	-0.9
3,659,155	-		GFF3611	0.41	+1.0
3,659,162	+		GFF3611	0.41	+1.9
3,659,167	+		GFF3611	0.41	+0.4
3,659,167	+		GFF3611	0.41	-1.9
3,659,167	+		GFF3611	0.41	+0.5
3,659,172	+		GFF3611	0.42	-0.6
3,659,172	+		GFF3611	0.42	-0.7
3,659,172	+		GFF3611	0.42	+0.4
3,659,172	+		GFF3611	0.42	-1.9
3,659,172	+		GFF3611	0.42	-2.4
3,659,172	+		GFF3611	0.42	-2.0
3,659,172	+		GFF3611	0.42	+0.7
3,659,180	-		GFF3611	0.42	-1.7
3,659,180	-		GFF3611	0.42	-0.6
3,659,180	-		GFF3611	0.42	+0.2
3,659,180	-		GFF3611	0.42	-1.2
3,659,180	-		GFF3611	0.42	-1.0
3,659,186	-		GFF3611	0.42	-0.1
3,659,210	+		GFF3611	0.43	+1.1
3,659,216	+		GFF3611	0.44	-1.1
3,659,216	+		GFF3611	0.44	+1.2
3,659,224	-		GFF3611	0.44	-0.4
3,659,224	-		GFF3611	0.44	-0.0
3,659,231	+		GFF3611	0.44	+1.3
3,659,239	-		GFF3611	0.45	-1.2
3,659,239	-		GFF3611	0.45	+0.6
3,659,249	+		GFF3611	0.45	-0.7
3,659,254	+		GFF3611	0.46	-1.3
3,659,254	+		GFF3611	0.46	+0.5
3,659,262	-		GFF3611	0.46	-1.7
3,659,262	-		GFF3611	0.46	+0.6
3,659,262	-		GFF3611	0.46	-0.7
3,659,265	+		GFF3611	0.46	-0.5
3,659,305	-		GFF3611	0.48	-1.3
3,659,387	+		GFF3611	0.52	-0.0
3,659,400	+		GFF3611	0.53	+0.3
3,659,400	-		GFF3611	0.53	-0.6
3,659,418	-		GFF3611	0.54	-0.6
3,659,418	-		GFF3611	0.54	-0.0
3,659,429	-		GFF3611	0.54	+0.4
3,659,459	+		GFF3611	0.56	-0.6
3,659,459	+		GFF3611	0.56	+1.7
3,659,466	+		GFF3611	0.56	+0.3
3,659,467	-		GFF3611	0.56	+1.0
3,659,470	+		GFF3611	0.56	+0.4
3,659,480	+		GFF3611	0.57	-2.2
3,659,503	+		GFF3611	0.58	+0.3
3,659,540	-		GFF3611	0.60	-1.0
3,659,549	+		GFF3611	0.60	-0.8
3,659,549	+		GFF3611	0.60	-1.1
3,659,554	+		GFF3611	0.61	-0.3
3,659,557	-		GFF3611	0.61	-0.4
3,659,557	-		GFF3611	0.61	+0.9
3,659,574	+		GFF3611	0.62	-0.8
3,659,584	+		GFF3611	0.62	-0.4
3,659,592	-		GFF3611	0.62	-2.4
3,659,597	-		GFF3611	0.63	-1.7
3,659,602	+		GFF3611	0.63	+1.8
3,659,609	+		GFF3611	0.63	-0.5
3,659,617	-		GFF3611	0.64	-0.3
3,659,617	-		GFF3611	0.64	-0.4
3,659,643	-		GFF3611	0.65	+0.8
3,659,643	-		GFF3611	0.65	-0.6
3,659,676	-		GFF3611	0.67	+0.5
3,659,692	-		GFF3611	0.67	+0.7
3,659,701	+		GFF3611	0.68	-0.5
3,659,701	-		GFF3611	0.68	+0.8
3,659,709	-		GFF3611	0.68	-0.6
3,659,709	-		GFF3611	0.68	+0.2
3,659,715	+		GFF3611	0.69	-1.2
3,659,724	-		GFF3611	0.69	-0.0
3,659,742	+		GFF3611	0.70	-1.0
3,659,761	+		GFF3611	0.71	+0.1
3,659,761	+		GFF3611	0.71	-2.5
3,659,769	-		GFF3611	0.71	-1.8
3,659,779	-		GFF3611	0.72	+0.7
3,659,800	+		GFF3611	0.73	+0.8
3,659,806	+		GFF3611	0.73	-0.4
3,659,808	-		GFF3611	0.73	+0.0
3,659,808	-		GFF3611	0.73	-1.6
3,659,837	-		GFF3611	0.75	+0.2
3,659,853	+		GFF3611	0.75	-0.6
3,659,865	+		GFF3611	0.76	-1.7
3,659,871	+		GFF3611	0.76	-0.6
3,659,879	-		GFF3611	0.77	+1.4
3,659,946	-		GFF3611	0.80	-0.6
3,659,954	+		GFF3611	0.80	+0.6
3,659,962	-		GFF3611	0.81	-2.0
3,660,001	+		GFF3611	0.83	+0.7
3,660,063	-		GFF3611	0.86	-0.4
3,660,096	-		GFF3611	0.87	-2.6
3,660,096	-		GFF3611	0.87	+1.6
3,660,107	-		GFF3611	0.88	-0.5
3,660,121	-		GFF3611	0.89	+1.3
3,660,147	+				-1.9
3,660,192	-				+0.2
3,660,197	-				-0.2
3,660,254	+				-0.9
3,660,254	+				+0.6
3,660,269	+				+0.2
3,660,269	+				+1.5
3,660,269	+				-1.6
3,660,274	+				-0.6
3,660,277	-				-2.0
3,660,282	-				+1.3
3,660,282	-				+0.1
3,660,316	+				+1.0
3,660,352	+				-1.3
3,660,360	-				+0.8
3,660,360	-				-0.5
3,660,360	-				-0.4
3,660,379	-				-1.5
3,660,406	+				+1.1
3,660,419	-				-1.9
3,660,428	+				+1.3
3,660,466	+				+0.7
3,660,466	+				+0.0
3,660,469	-				+1.0
3,660,478	+				-0.1
3,660,478	+				+1.3
3,660,905	+		GFF3612	0.43	-0.2
3,660,905	+		GFF3612	0.43	-0.3
3,660,907	+		GFF3612	0.43	+0.6
3,660,931	+		GFF3612	0.45	-0.2
3,660,969	+		GFF3612	0.49	+0.6
3,661,038	+		GFF3612	0.56	-0.0
3,661,044	+		GFF3612	0.56	+0.3
3,661,054	+		GFF3612	0.57	+0.2
3,661,054	+		GFF3612	0.57	-0.6
3,661,080	+		GFF3612	0.60	+0.6
3,661,099	+		GFF3612	0.62	+0.8
3,661,107	-		GFF3612	0.63	+2.0
3,661,122	-		GFF3612	0.64	-0.8
3,661,168	+		GFF3612	0.69	-2.0
3,661,218	+		GFF3612	0.74	-0.3
3,661,218	+		GFF3612	0.74	-0.4
3,661,218	+		GFF3612	0.74	-0.2
3,661,223	+		GFF3612	0.74	-1.0
3,661,261	+		GFF3612	0.78	+0.6
3,661,274	+		GFF3612	0.79	+0.6
3,661,321	-		GFF3612	0.84	-0.5