Strain Fitness in Sphingobium sp. HT1-2 around GFF3560

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,604,286	-		GFF3558	0.87	-0.4
3,604,288	+		GFF3558	0.87	+0.7
3,604,288	+		GFF3558	0.87	-0.5
3,604,296	-		GFF3558	0.88	+0.7
3,604,296	-		GFF3558	0.88	-0.5
3,604,301	+		GFF3558	0.88	+0.1
3,604,306	+		GFF3558	0.89	-0.5
3,604,306	+		GFF3558	0.89	+1.5
3,604,306	+		GFF3558	0.89	-0.6
3,604,306	+		GFF3558	0.89	-0.4
3,604,306	+		GFF3558	0.89	-0.3
3,604,306	+		GFF3558	0.89	+0.3
3,604,309	-		GFF3558	0.89	+0.5
3,604,309	-		GFF3558	0.89	-0.8
3,604,311	+		GFF3558	0.89	+0.1
3,604,314	-		GFF3558	0.89	-0.7
3,604,314	-		GFF3558	0.89	-1.3
3,604,314	-		GFF3558	0.89	-1.6
3,604,321	+		GFF3558	0.90	-2.0
3,604,321	+		GFF3558	0.90	-0.2
3,604,321	+		GFF3558	0.90	+0.3
3,604,329	-				+0.2
3,604,329	-				+0.3
3,604,329	-				+0.4
3,604,341	+				-0.8
3,604,341	+				-1.0
3,604,346	+				-1.6
3,604,349	-				+0.6
3,604,349	-				-1.7
3,604,373	+				-0.9
3,604,381	-				-2.1
3,604,381	-				-0.7
3,604,381	-				-1.4
3,604,393	-				+0.4
3,604,473	-				-1.4
3,604,509	-				+0.2
3,604,543	-				-0.1
3,604,560	-		GFF3559	0.10	-1.0
3,604,581	-		GFF3559	0.13	-0.3
3,604,582	-		GFF3559	0.13	+1.1
3,604,589	-		GFF3559	0.14	+0.4
3,604,589	-		GFF3559	0.14	+0.2
3,604,589	-		GFF3559	0.14	-1.6
3,604,629	+		GFF3559	0.20	-2.3
3,604,632	-		GFF3559	0.21	+0.7
3,604,637	-		GFF3559	0.22	+0.0
3,604,649	-		GFF3559	0.23	-0.4
3,604,649	-		GFF3559	0.23	+0.8
3,604,719	+		GFF3559	0.34	-0.3
3,604,787	+		GFF3559	0.44	-1.6
3,604,817	-		GFF3559	0.48	+1.3
3,604,818	-		GFF3559	0.48	+0.4
3,604,818	-		GFF3559	0.48	+0.5
3,604,824	-		GFF3559	0.49	-0.2
3,604,824	-		GFF3559	0.49	+0.7
3,604,827	+		GFF3559	0.50	-1.0
3,604,846	+		GFF3559	0.52	+1.0
3,604,854	+		GFF3559	0.54	-1.3
3,604,854	-		GFF3559	0.54	-1.0
3,604,854	-		GFF3559	0.54	-0.8
3,604,876	-		GFF3559	0.57	-0.5
3,604,888	-		GFF3559	0.59	-0.5
3,604,888	-		GFF3559	0.59	-1.3
3,604,888	-		GFF3559	0.59	-0.9
3,604,908	+		GFF3559	0.62	-0.5
3,604,913	+		GFF3559	0.62	-1.1
3,604,919	+		GFF3559	0.63	-2.3
3,604,921	-		GFF3559	0.63	-1.4
3,604,927	-		GFF3559	0.64	-3.3
3,604,927	-		GFF3559	0.64	+1.0
3,604,929	+		GFF3559	0.65	+1.3
3,604,947	-		GFF3559	0.67	-1.1
3,604,963	+		GFF3559	0.70	-1.4
3,604,996	+		GFF3559	0.74	-1.0
3,604,996	+		GFF3559	0.74	-1.3
3,605,009	+		GFF3559	0.76	-1.0
3,605,015	+		GFF3559	0.77	-2.5
3,605,015	+		GFF3559	0.77	-1.9
3,605,015	+		GFF3559	0.77	+1.9
3,605,029	-		GFF3559	0.79	-3.3
3,605,132	-				-1.7
3,605,162	+				-0.6
3,605,163	+				-0.8
3,605,163	+				-1.2
3,605,163	+				+0.7
3,605,171	-				+2.1
3,605,171	-				-2.5
3,605,172	+				+0.3
3,605,175	-				-0.0
3,605,215	+				-2.2
3,605,233	+				-1.4
3,605,336	+				-1.1
3,605,388	+		GFF3560	0.11	-1.5
3,605,389	-		GFF3560	0.11	+0.3
3,605,437	+		GFF3560	0.16	-0.9
3,605,445	-		GFF3560	0.16	+0.4
3,605,455	-		GFF3560	0.17	-0.6
3,605,488	-		GFF3560	0.21	-0.7
3,605,495	-		GFF3560	0.21	-1.0
3,605,500	+		GFF3560	0.22	-1.2
3,605,508	-		GFF3560	0.23	-1.0
3,605,508	-		GFF3560	0.23	+0.2
3,605,510	+		GFF3560	0.23	-1.5
3,605,510	+		GFF3560	0.23	-1.3
3,605,520	+		GFF3560	0.24	-0.4
3,605,520	+		GFF3560	0.24	-0.8
3,605,522	+		GFF3560	0.24	+0.2
3,605,530	+		GFF3560	0.25	-1.0
3,605,530	-		GFF3560	0.25	-1.7
3,605,538	-		GFF3560	0.26	+0.7
3,605,539	+		GFF3560	0.26	-0.5
3,605,589	-		GFF3560	0.31	-0.2
3,605,597	+		GFF3560	0.32	+1.3
3,605,617	-		GFF3560	0.34	-2.0
3,605,620	-		GFF3560	0.34	+0.4
3,605,637	+		GFF3560	0.36	-2.1
3,605,642	+		GFF3560	0.36	-0.9
3,605,657	+		GFF3560	0.38	+0.2
3,605,657	+		GFF3560	0.38	+0.1
3,605,665	-		GFF3560	0.38	-0.6
3,605,665	-		GFF3560	0.38	+0.3
3,605,665	-		GFF3560	0.38	-1.5
3,605,665	-		GFF3560	0.38	-1.8
3,605,665	-		GFF3560	0.38	+0.9
3,605,682	-		GFF3560	0.40	-0.2
3,605,682	-		GFF3560	0.40	+1.5
3,605,683	+		GFF3560	0.40	-1.7
3,605,683	+		GFF3560	0.40	-1.4
3,605,683	+		GFF3560	0.40	-1.3
3,605,683	+		GFF3560	0.40	-1.4
3,605,683	+		GFF3560	0.40	-1.1
3,605,683	+		GFF3560	0.40	+1.8
3,605,683	+		GFF3560	0.40	-1.8
3,605,683	+		GFF3560	0.40	-1.7
3,605,683	+		GFF3560	0.40	+0.8
3,605,683	+		GFF3560	0.40	+1.6
3,605,691	-		GFF3560	0.41	-1.5
3,605,691	-		GFF3560	0.41	+0.6
3,605,691	-		GFF3560	0.41	-0.4
3,605,691	-		GFF3560	0.41	+1.4
3,605,691	-		GFF3560	0.41	-0.1
3,605,691	-		GFF3560	0.41	-0.1
3,605,691	-		GFF3560	0.41	+0.3
3,605,691	-		GFF3560	0.41	-2.3
3,605,701	-		GFF3560	0.42	-0.5
3,605,704	+		GFF3560	0.42	-1.4
3,605,704	+		GFF3560	0.42	-0.2
3,605,704	+		GFF3560	0.42	-1.3
3,605,704	+		GFF3560	0.42	-1.0
3,605,712	-		GFF3560	0.43	+0.8
3,605,714	+		GFF3560	0.43	+0.5
3,605,714	+		GFF3560	0.43	+0.1
3,605,714	+		GFF3560	0.43	-0.4
3,605,714	+		GFF3560	0.43	-1.0
3,605,722	-		GFF3560	0.44	+0.2
3,605,729	+		GFF3560	0.45	+0.7
3,605,741	+		GFF3560	0.46	+0.8
3,605,748	+		GFF3560	0.47	+0.1
3,605,748	+		GFF3560	0.47	+0.8
3,605,759	-		GFF3560	0.48	-1.6
3,605,767	+		GFF3560	0.49	-0.2
3,605,767	+		GFF3560	0.49	-0.9
3,605,767	+		GFF3560	0.49	-0.3
3,605,783	+		GFF3560	0.50	-0.5
3,605,783	+		GFF3560	0.50	-1.3
3,605,783	+		GFF3560	0.50	-2.3
3,605,783	+		GFF3560	0.50	-1.6
3,605,783	+		GFF3560	0.50	-0.7
3,605,783	+		GFF3560	0.50	-1.3
3,605,783	+		GFF3560	0.50	+1.3
3,605,791	-		GFF3560	0.51	+0.7
3,605,791	-		GFF3560	0.51	+1.0
3,605,792	-		GFF3560	0.51	-1.4
3,605,792	-		GFF3560	0.51	+0.2
3,605,793	+		GFF3560	0.51	-0.6
3,605,795	+		GFF3560	0.52	+1.5
3,605,796	+		GFF3560	0.52	+0.3
3,605,804	-		GFF3560	0.52	-0.4
3,605,810	+		GFF3560	0.53	-0.6
3,605,815	+		GFF3560	0.54	+0.6
3,605,815	+		GFF3560	0.54	+0.2
3,605,815	+		GFF3560	0.54	-1.6
3,605,823	+		GFF3560	0.54	-0.2
3,605,823	+		GFF3560	0.54	-1.3
3,605,823	+		GFF3560	0.54	+1.4
3,605,823	+		GFF3560	0.54	-1.5
3,605,823	-		GFF3560	0.54	+0.4
3,605,823	-		GFF3560	0.54	+0.2
3,605,823	-		GFF3560	0.54	-1.4
3,605,830	+		GFF3560	0.55	+0.7
3,605,830	+		GFF3560	0.55	+0.2
3,605,831	-		GFF3560	0.55	+1.4
3,605,831	-		GFF3560	0.55	-1.2
3,605,831	-		GFF3560	0.55	-1.4
3,605,835	-		GFF3560	0.56	-0.2
3,605,837	+		GFF3560	0.56	+0.2
3,605,839	-		GFF3560	0.56	-0.5
3,605,852	+		GFF3560	0.57	-0.7
3,605,855	+		GFF3560	0.58	-0.5
3,605,878	+		GFF3560	0.60	-0.5
3,605,878	+		GFF3560	0.60	+0.1
3,605,878	+		GFF3560	0.60	+1.3
3,605,886	-		GFF3560	0.61	-0.6
3,605,909	+		GFF3560	0.63	+0.8
3,605,909	+		GFF3560	0.63	+1.4
3,605,909	+		GFF3560	0.63	+0.3
3,605,909	+		GFF3560	0.63	-0.3
3,605,916	+		GFF3560	0.64	+0.8
3,605,916	+		GFF3560	0.64	+0.5
3,605,916	+		GFF3560	0.64	+0.6
3,605,917	-		GFF3560	0.64	+0.1
3,605,917	-		GFF3560	0.64	+0.4
3,605,917	-		GFF3560	0.64	+0.0
3,605,924	-		GFF3560	0.64	-0.6
3,605,924	-		GFF3560	0.64	-0.1
3,605,933	+		GFF3560	0.65	+0.1
3,605,933	+		GFF3560	0.65	-1.5
3,605,933	+		GFF3560	0.65	-1.0
3,605,933	+		GFF3560	0.65	+0.2
3,605,933	+		GFF3560	0.65	-0.3
3,605,933	+		GFF3560	0.65	+0.7
3,605,934	-		GFF3560	0.65	-0.9
3,605,934	-		GFF3560	0.65	-1.3
3,605,941	-		GFF3560	0.66	-1.8
3,605,968	+		GFF3560	0.69	+0.1
3,605,968	+		GFF3560	0.69	-0.1
3,605,968	+		GFF3560	0.69	+0.7
3,605,968	+		GFF3560	0.69	+0.7
3,605,968	+		GFF3560	0.69	-0.1
3,605,968	+		GFF3560	0.69	-0.9
3,605,968	+		GFF3560	0.69	+1.0
3,605,976	-		GFF3560	0.70	-0.6
3,605,976	-		GFF3560	0.70	+0.2
3,605,976	-		GFF3560	0.70	-0.1
3,605,976	-		GFF3560	0.70	+1.5
3,605,983	+		GFF3560	0.70	-1.5
3,605,985	+		GFF3560	0.71	-0.1
3,605,989	+		GFF3560	0.71	-1.8
3,605,990	+		GFF3560	0.71	-1.2
3,605,990	+		GFF3560	0.71	+0.6
3,605,990	+		GFF3560	0.71	+0.4
3,605,993	-		GFF3560	0.71	+0.9
3,605,998	-		GFF3560	0.72	-1.5
3,605,998	-		GFF3560	0.72	+0.6
3,606,000	+		GFF3560	0.72	+0.0
3,606,000	+		GFF3560	0.72	+0.3
3,606,005	-		GFF3560	0.73	-0.4
3,606,007	+		GFF3560	0.73	-0.2
3,606,008	-		GFF3560	0.73	+0.3
3,606,008	-		GFF3560	0.73	-2.6
3,606,012	+		GFF3560	0.73	-0.1
3,606,012	+		GFF3560	0.73	+0.1
3,606,012	+		GFF3560	0.73	-1.7
3,606,012	+		GFF3560	0.73	-2.3
3,606,012	+		GFF3560	0.73	+0.5
3,606,017	+		GFF3560	0.74	+0.3
3,606,020	-		GFF3560	0.74	+0.4
3,606,020	-		GFF3560	0.74	-2.1
3,606,020	-		GFF3560	0.74	-0.6
3,606,022	+		GFF3560	0.74	+1.5
3,606,025	+		GFF3560	0.75	-0.8
3,606,033	-		GFF3560	0.75	-0.4
3,606,052	-		GFF3560	0.77	-1.3
3,606,054	+		GFF3560	0.78	+1.3
3,606,054	+		GFF3560	0.78	+0.9
3,606,054	+		GFF3560	0.78	+1.3
3,606,054	+		GFF3560	0.78	+1.1
3,606,054	+		GFF3560	0.78	-0.0
3,606,054	+		GFF3560	0.78	-0.3
3,606,054	+		GFF3560	0.78	-0.6
3,606,054	+		GFF3560	0.78	-0.4
3,606,054	+		GFF3560	0.78	-0.8
3,606,058	+		GFF3560	0.78	+0.5
3,606,059	+		GFF3560	0.78	-1.7
3,606,067	-		GFF3560	0.79	-0.2
3,606,098	+		GFF3560	0.82	+0.3
3,606,121	+		GFF3560	0.84	+0.4
3,606,123	+		GFF3560	0.84	-0.5
3,606,128	+		GFF3560	0.85	-0.9
3,606,128	+		GFF3560	0.85	+0.0
3,606,128	+		GFF3560	0.85	+0.5
3,606,128	+		GFF3560	0.85	+0.6
3,606,128	+		GFF3560	0.85	+0.3
3,606,128	+		GFF3560	0.85	+1.0
3,606,128	+		GFF3560	0.85	+0.7
3,606,128	+		GFF3560	0.85	-0.3
3,606,128	+		GFF3560	0.85	+0.2
3,606,128	+		GFF3560	0.85	+0.0
3,606,128	+		GFF3560	0.85	-0.8
3,606,129	+		GFF3560	0.85	+1.2
3,606,131	-		GFF3560	0.85	-0.2
3,606,131	-		GFF3560	0.85	-0.2
3,606,136	+		GFF3560	0.86	-0.8
3,606,136	+		GFF3560	0.86	-0.3
3,606,136	+		GFF3560	0.86	+0.5
3,606,136	-		GFF3560	0.86	-1.6
3,606,136	-		GFF3560	0.86	+0.3
3,606,136	-		GFF3560	0.86	-2.1
3,606,136	-		GFF3560	0.86	+0.9
3,606,136	-		GFF3560	0.86	-0.5
3,606,136	-		GFF3560	0.86	+0.5
3,606,136	-		GFF3560	0.86	-1.1
3,606,136	-		GFF3560	0.86	-2.4
3,606,136	-		GFF3560	0.86	+0.7
3,606,137	+		GFF3560	0.86	-2.0
3,606,137	+		GFF3560	0.86	-0.3
3,606,164	-		GFF3560	0.89	-1.6
3,606,174	+		GFF3560	0.90	-2.3
3,606,179	+				-0.4
3,606,179	+				-0.5
3,606,179	+				-0.3
3,606,179	+				-0.2
3,606,184	+				+0.2
3,606,187	-				-2.3
3,606,187	-				-1.8
3,606,187	-				-0.4
3,606,187	-				+0.3
3,606,189	+				+0.3
3,606,189	+				-0.5
3,606,189	+				-0.5
3,606,194	+				-1.9
3,606,194	+				+0.7
3,606,197	+				+0.6
3,606,202	-				-1.2
3,606,210	-				+0.8
3,606,227	+				+1.0
3,606,227	+				+0.9
3,606,260	+				-1.2
3,606,371	+				-2.1
3,606,394	-				-1.3
3,606,394	-				+0.8
3,606,447	-		GFF3561	0.20	-1.6
3,606,449	-		GFF3561	0.21	+0.5
3,606,541	+		GFF3561	0.44	-0.1
3,606,550	+		GFF3561	0.46	+0.3
3,606,558	-		GFF3561	0.48	-1.6
3,606,566	+		GFF3561	0.50	+0.7
3,606,566	+		GFF3561	0.50	-1.5
3,606,574	-		GFF3561	0.52	-0.4
3,606,574	-		GFF3561	0.52	+0.5
3,606,574	-		GFF3561	0.52	-1.0
3,606,589	+		GFF3561	0.56	+0.2
3,606,590	+		GFF3561	0.56	-1.6
3,606,595	+		GFF3561	0.57	-1.0
3,606,598	-		GFF3561	0.58	-0.0
3,606,598	-		GFF3561	0.58	-1.4
3,606,598	-		GFF3561	0.58	-2.1
3,606,600	+		GFF3561	0.59	-0.1
3,606,600	+		GFF3561	0.59	-0.2
3,606,600	+		GFF3561	0.59	-0.2
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3,606,608	-		GFF3561	0.61	-2.4
3,606,646	-		GFF3561	0.70	-0.7
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3,606,675	-		GFF3561	0.77	-0.8
3,606,677	-		GFF3561	0.78	-2.3
3,606,702	-		GFF3561	0.84	-1.3
3,606,706	-		GFF3561	0.85	-1.6
3,606,706	-		GFF3561	0.85	+1.0
3,606,707	-		GFF3561	0.85	+1.0
3,606,797	+				-2.0
3,606,806	-		GFF3562	0.12	-0.0
3,606,814	+		GFF3562	0.14	-0.5
3,606,816	-		GFF3562	0.15	-0.3
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3,606,824	+		GFF3562	0.17	+0.1
3,606,824	+		GFF3562	0.17	-1.1
3,606,824	+		GFF3562	0.17	-2.1
3,606,824	+		GFF3562	0.17	+0.5
3,606,824	+		GFF3562	0.17	+1.0
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3,606,830	+		GFF3562	0.19	-1.6
3,606,830	+		GFF3562	0.19	+1.1
3,606,830	+		GFF3562	0.19	-2.5
3,606,830	+		GFF3562	0.19	+0.7
3,606,830	+		GFF3562	0.19	+1.3
3,606,833	-		GFF3562	0.20	+0.4
3,606,833	-		GFF3562	0.20	-0.5
3,606,833	-		GFF3562	0.20	-1.5
3,606,833	-		GFF3562	0.20	-1.8
3,606,833	-		GFF3562	0.20	-0.9
3,606,833	-		GFF3562	0.20	-2.0
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3,606,838	-		GFF3562	0.21	-1.7
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3,606,924	+		GFF3562	0.46	-2.3
3,606,961	+		GFF3562	0.57	+0.2
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3,606,971	+		GFF3562	0.60	-0.7
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3,606,979	-		GFF3562	0.62	-1.6
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3,607,035	-		GFF3562	0.79	-1.8
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3,607,053	-		GFF3562	0.84	+0.2
3,607,063	-		GFF3562	0.87	-2.3
3,607,093	+				-2.1
3,607,101	-				+1.1
3,607,101	-				+0.0
3,607,101	-				-1.3
3,607,101	-				-0.9
3,607,124	-				-0.4
3,607,130	+				+0.0
3,607,132	+		GFF3563	0.10	-1.8
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3,607,144	-		GFF3563	0.14	-3.0
3,607,190	+		GFF3563	0.29	-1.6
3,607,190	+		GFF3563	0.29	-0.4
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3,607,198	-		GFF3563	0.32	-2.5
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3,607,255	+		GFF3563	0.50	-1.1
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3,607,266	+		GFF3563	0.54	+1.5
3,607,266	+		GFF3563	0.54	-1.0
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