Strain Fitness in Sphingobium sp. HT1-2 around GFF3555

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,598,617	+		GFF3553	0.12	-2.4
3,598,687	+		GFF3553	0.32	+1.7
3,598,698	-		GFF3553	0.35	-1.2
3,598,700	+		GFF3553	0.36	+0.4
3,598,700	+		GFF3553	0.36	+0.1
3,598,705	+		GFF3553	0.37	+0.0
3,598,706	-		GFF3553	0.38	+0.0
3,598,707	+		GFF3553	0.38	+1.4
3,598,707	+		GFF3553	0.38	+1.1
3,598,708	-		GFF3553	0.38	-2.0
3,598,708	-		GFF3553	0.38	+1.5
3,598,708	-		GFF3553	0.38	-0.2
3,598,712	+		GFF3553	0.40	-1.8
3,598,724	+		GFF3553	0.43	+0.0
3,598,724	+		GFF3553	0.43	-0.5
3,598,724	+		GFF3553	0.43	-0.3
3,598,726	+		GFF3553	0.44	-1.0
3,598,726	+		GFF3553	0.44	+0.5
3,598,726	+		GFF3553	0.44	-0.4
3,598,760	+		GFF3553	0.54	+0.1
3,598,760	+		GFF3553	0.54	-0.5
3,598,760	+		GFF3553	0.54	+0.8
3,598,767	+		GFF3553	0.56	+0.2
3,598,768	-		GFF3553	0.56	-1.0
3,598,774	+		GFF3553	0.58	+1.7
3,598,775	+		GFF3553	0.58	-1.1
3,598,775	+		GFF3553	0.58	-0.2
3,598,775	+		GFF3553	0.58	+0.3
3,598,775	+		GFF3553	0.58	-0.7
3,598,775	+		GFF3553	0.58	+0.1
3,598,775	+		GFF3553	0.58	+0.1
3,598,775	+		GFF3553	0.58	-0.4
3,598,775	+		GFF3553	0.58	+0.5
3,598,775	+		GFF3553	0.58	-0.5
3,598,775	+		GFF3553	0.58	+0.7
3,598,775	+		GFF3553	0.58	+0.5
3,598,775	+		GFF3553	0.58	+0.9
3,598,775	+		GFF3553	0.58	-0.2
3,598,775	+		GFF3553	0.58	-1.4
3,598,775	-		GFF3553	0.58	-1.7
3,598,781	-		GFF3553	0.60	+0.0
3,598,783	-		GFF3553	0.60	-1.3
3,598,783	-		GFF3553	0.60	+0.7
3,598,783	-		GFF3553	0.60	-0.4
3,598,783	-		GFF3553	0.60	-0.1
3,598,783	-		GFF3553	0.60	-1.9
3,598,783	-		GFF3553	0.60	-0.7
3,598,783	-		GFF3553	0.60	+1.1
3,598,783	-		GFF3553	0.60	-2.2
3,598,783	-		GFF3553	0.60	+0.5
3,598,795	+		GFF3553	0.64	+0.7
3,598,806	+		GFF3553	0.67	-0.4
3,598,828	-		GFF3553	0.74	+0.1
3,598,870	+		GFF3553	0.86	-0.3
3,598,887	+				-0.5
3,598,887	+				+0.6
3,598,895	-				-1.6
3,598,905	-				-0.7
3,598,910	+				+0.2
3,598,910	+				-0.9
3,598,910	+				+0.1
3,598,918	+				-1.4
3,598,918	-				-1.5
3,598,918	-				-0.5
3,598,918	-				-0.7
3,598,918	-				-1.2
3,598,918	-				-0.9
3,598,927	+				+0.4
3,598,928	-				+0.8
3,598,928	-				-2.0
3,598,935	-				-0.1
3,598,938	+				+0.2
3,598,938	+				+0.2
3,598,938	+				+0.3
3,598,955	-				+1.8
3,598,971	+				+1.8
3,598,973	+				+0.5
3,598,985	-				-0.5
3,598,987	+				+0.7
3,598,995	-				-0.1
3,598,997	+				-1.6
3,599,002	-				-1.7
3,599,002	-				+0.2
3,599,020	+				+1.6
3,599,020	+				-0.1
3,599,020	+				-0.8
3,599,028	-		GFF3554	0.11	-1.1
3,599,028	-		GFF3554	0.11	-1.0
3,599,075	+		GFF3554	0.20	-1.0
3,599,085	-		GFF3554	0.22	+1.0
3,599,100	+		GFF3554	0.25	+0.3
3,599,100	+		GFF3554	0.25	+0.2
3,599,100	+		GFF3554	0.25	+0.5
3,599,107	+		GFF3554	0.26	-1.2
3,599,107	+		GFF3554	0.26	+1.2
3,599,107	+		GFF3554	0.26	-1.0
3,599,107	+		GFF3554	0.26	-0.9
3,599,107	+		GFF3554	0.26	-1.1
3,599,107	+		GFF3554	0.26	-0.0
3,599,107	+		GFF3554	0.26	-0.6
3,599,107	+		GFF3554	0.26	-0.1
3,599,107	+		GFF3554	0.26	+0.2
3,599,107	+		GFF3554	0.26	-0.0
3,599,107	+		GFF3554	0.26	-2.6
3,599,107	+		GFF3554	0.26	+0.4
3,599,107	+		GFF3554	0.26	+0.6
3,599,107	+		GFF3554	0.26	-0.5
3,599,107	+		GFF3554	0.26	+0.6
3,599,109	-		GFF3554	0.27	+0.7
3,599,109	-		GFF3554	0.27	+0.3
3,599,109	-		GFF3554	0.27	+0.4
3,599,109	-		GFF3554	0.27	+0.6
3,599,112	+		GFF3554	0.27	-1.2
3,599,115	-		GFF3554	0.28	-0.2
3,599,115	-		GFF3554	0.28	+1.0
3,599,115	-		GFF3554	0.28	-0.4
3,599,115	-		GFF3554	0.28	-0.2
3,599,115	-		GFF3554	0.28	+0.5
3,599,115	-		GFF3554	0.28	+1.2
3,599,115	-		GFF3554	0.28	+1.0
3,599,115	-		GFF3554	0.28	-0.2
3,599,115	-		GFF3554	0.28	-1.8
3,599,115	-		GFF3554	0.28	+0.4
3,599,115	-		GFF3554	0.28	-0.6
3,599,115	-		GFF3554	0.28	-0.9
3,599,115	-		GFF3554	0.28	-2.4
3,599,115	-		GFF3554	0.28	-1.1
3,599,115	-		GFF3554	0.28	-0.1
3,599,117	+		GFF3554	0.28	+1.3
3,599,127	+		GFF3554	0.30	-1.3
3,599,127	+		GFF3554	0.30	+0.3
3,599,129	-		GFF3554	0.31	+0.2
3,599,135	-		GFF3554	0.32	+0.9
3,599,135	-		GFF3554	0.32	-0.1
3,599,160	-		GFF3554	0.37	+0.6
3,599,163	+		GFF3554	0.38	-0.0
3,599,166	+		GFF3554	0.38	-3.2
3,599,192	-		GFF3554	0.43	+0.1
3,599,197	-		GFF3554	0.44	+1.5
3,599,205	+		GFF3554	0.46	-1.1
3,599,217	+		GFF3554	0.48	+0.3
3,599,224	-		GFF3554	0.50	-0.3
3,599,224	-		GFF3554	0.50	+0.2
3,599,224	-		GFF3554	0.50	+0.1
3,599,228	-		GFF3554	0.50	+0.5
3,599,232	+		GFF3554	0.51	-0.8
3,599,232	+		GFF3554	0.51	-0.5
3,599,251	+		GFF3554	0.55	-0.9
3,599,255	-		GFF3554	0.56	+0.1
3,599,269	-		GFF3554	0.59	+0.3
3,599,272	+		GFF3554	0.59	+1.1
3,599,272	+		GFF3554	0.59	-0.2
3,599,272	+		GFF3554	0.59	+0.4
3,599,279	-		GFF3554	0.61	+0.8
3,599,280	-		GFF3554	0.61	-0.2
3,599,280	-		GFF3554	0.61	+1.0
3,599,280	-		GFF3554	0.61	+0.0
3,599,284	+		GFF3554	0.62	-0.3
3,599,287	-		GFF3554	0.62	+1.0
3,599,318	+		GFF3554	0.68	-2.6
3,599,318	+		GFF3554	0.68	-0.3
3,599,326	+		GFF3554	0.70	+0.2
3,599,334	-		GFF3554	0.71	-0.3
3,599,334	-		GFF3554	0.71	-0.1
3,599,347	-		GFF3554	0.74	-0.4
3,599,354	-		GFF3554	0.75	+0.3
3,599,356	+		GFF3554	0.76	+0.2
3,599,364	-		GFF3554	0.77	+0.3
3,599,368	+		GFF3554	0.78	-1.0
3,599,368	+		GFF3554	0.78	-0.1
3,599,368	+		GFF3554	0.78	-0.3
3,599,374	+		GFF3554	0.79	+0.1
3,599,374	+		GFF3554	0.79	+0.1
3,599,376	-		GFF3554	0.80	+1.0
3,599,380	-		GFF3554	0.81	+0.8
3,599,382	-		GFF3554	0.81	+0.2
3,599,382	-		GFF3554	0.81	+0.4
3,599,386	-		GFF3554	0.82	-0.1
3,599,401	+		GFF3554	0.85	-1.7
3,599,406	+		GFF3554	0.86	-0.1
3,599,406	+		GFF3554	0.86	-1.0
3,599,406	+		GFF3554	0.86	-0.3
3,599,406	+		GFF3554	0.86	+1.2
3,599,406	+		GFF3554	0.86	-0.1
3,599,414	-		GFF3554	0.87	-0.6
3,599,414	-		GFF3554	0.87	-1.0
3,599,414	-		GFF3554	0.87	-2.3
3,599,416	+		GFF3554	0.88	-0.1
3,599,417	+		GFF3554	0.88	+0.3
3,599,417	+		GFF3554	0.88	-1.9
3,599,429	-				-0.3
3,599,437	+				+0.5
3,599,483	+				-0.8
3,599,496	-				+1.3
3,599,513	-				-0.4
3,599,517	+				+0.9
3,599,525	-				+0.5
3,599,528	-				-1.6
3,599,530	+				+1.3
3,599,570	-				-0.8
3,599,570	-				-1.7
3,599,583	-				-1.1
3,599,595	-				+0.7
3,599,668	-				+0.3
3,599,685	-		GFF3555	0.11	+0.1
3,599,695	-		GFF3555	0.12	+0.1
3,599,695	-		GFF3555	0.12	+0.1
3,599,695	-		GFF3555	0.12	-0.6
3,599,699	-		GFF3555	0.13	+0.8
3,599,699	-		GFF3555	0.13	-1.6
3,599,701	-		GFF3555	0.13	+0.5
3,599,701	-		GFF3555	0.13	+0.6
3,599,718	-		GFF3555	0.15	-0.7
3,599,721	-		GFF3555	0.16	-1.5
3,599,761	+		GFF3555	0.21	-1.8
3,599,766	-		GFF3555	0.21	-0.4
3,599,791	-		GFF3555	0.25	-2.7
3,599,791	-		GFF3555	0.25	-0.1
3,599,791	-		GFF3555	0.25	-0.2
3,599,791	-		GFF3555	0.25	+0.5
3,599,803	+		GFF3555	0.26	+0.6
3,599,803	-		GFF3555	0.26	+0.5
3,599,803	-		GFF3555	0.26	-0.8
3,599,803	-		GFF3555	0.26	+0.1
3,599,803	-		GFF3555	0.26	-0.5
3,599,805	+		GFF3555	0.26	-0.9
3,599,811	-		GFF3555	0.27	+1.3
3,599,811	-		GFF3555	0.27	-1.4
3,599,811	-		GFF3555	0.27	-1.6
3,599,811	-		GFF3555	0.27	+1.3
3,599,813	-		GFF3555	0.27	-0.2
3,599,823	+		GFF3555	0.29	+0.5
3,599,823	+		GFF3555	0.29	-1.5
3,599,823	+		GFF3555	0.29	-2.1
3,599,830	+		GFF3555	0.30	-0.6
3,599,830	+		GFF3555	0.30	-1.3
3,599,830	+		GFF3555	0.30	-1.4
3,599,830	+		GFF3555	0.30	-1.6
3,599,831	-		GFF3555	0.30	-0.8
3,599,831	-		GFF3555	0.30	+0.5
3,599,831	-		GFF3555	0.30	+1.1
3,599,831	-		GFF3555	0.30	+0.7
3,599,838	-		GFF3555	0.31	+0.6
3,599,849	-		GFF3555	0.32	+0.6
3,599,859	-		GFF3555	0.33	-0.7
3,599,890	-		GFF3555	0.37	-1.2
3,599,890	-		GFF3555	0.37	-0.2
3,599,894	-		GFF3555	0.38	+0.6
3,599,894	-		GFF3555	0.38	-1.5
3,599,917	-		GFF3555	0.41	+0.3
3,599,941	-		GFF3555	0.44	-0.3
3,599,965	+		GFF3555	0.47	-1.6
3,599,973	-		GFF3555	0.48	-0.9
3,599,973	-		GFF3555	0.48	-1.3
3,599,987	-		GFF3555	0.50	-0.4
3,600,005	-		GFF3555	0.52	-0.1
3,600,010	-		GFF3555	0.52	-0.4
3,600,012	-		GFF3555	0.53	-0.2
3,600,025	-		GFF3555	0.54	+0.6
3,600,027	-		GFF3555	0.55	-0.6
3,600,064	-		GFF3555	0.59	+0.4
3,600,075	+		GFF3555	0.61	-1.3
3,600,081	-		GFF3555	0.62	-0.5
3,600,082	-		GFF3555	0.62	-1.4
3,600,151	-		GFF3555	0.70	+1.4
3,600,169	+		GFF3555	0.73	-0.4
3,600,172	-		GFF3555	0.73	+0.6
3,600,172	-		GFF3555	0.73	-0.0
3,600,187	-		GFF3555	0.75	+0.5
3,600,187	-		GFF3555	0.75	+0.7
3,600,187	-		GFF3555	0.75	-1.4
3,600,198	+		GFF3555	0.77	-1.1
3,600,198	+		GFF3555	0.77	+0.4
3,600,198	+		GFF3555	0.77	+1.7
3,600,198	+		GFF3555	0.77	-2.0
3,600,206	-		GFF3555	0.78	-0.5
3,600,206	-		GFF3555	0.78	+0.3
3,600,206	-		GFF3555	0.78	-1.0
3,600,219	-		GFF3555	0.79	+1.0
3,600,221	-		GFF3555	0.79	+0.4
3,600,221	-		GFF3555	0.79	-1.2
3,600,221	-		GFF3555	0.79	+0.3
3,600,283	+		GFF3555	0.87	-1.8
3,600,288	+		GFF3555	0.88	-1.4
3,600,318	+				+0.3
3,600,318	+				-0.7
3,600,319	+				-1.3
3,600,326	-				-2.1
3,600,326	-				+0.7
3,600,327	-				-0.8
3,600,327	-				+0.5
3,600,327	-				+0.1
3,600,327	-				+0.0
3,600,327	-				+0.5
3,600,327	-				-1.8
3,600,327	-				+0.3
3,600,328	-				+0.8
3,600,345	-				+0.5
3,600,345	-				+0.5
3,600,345	-				-0.2
3,600,407	-				+0.9
3,600,416	-				-0.2
3,600,438	-				+0.1
3,600,438	-				-1.8
3,600,438	-				-0.9
3,600,438	-				-1.7
3,600,518	-				+0.2
3,600,544	-				-0.6
3,600,544	-				-1.2
3,600,560	-				+0.7
3,600,564	-				-1.3
3,600,572	-				-0.8
3,600,582	-				-0.0
3,600,608	+				-1.9
3,600,609	-				-0.1
3,600,609	-				+1.2
3,600,621	-				-0.9
3,600,623	-				-0.2
3,600,701	+				-1.6
3,600,744	-				-1.4
3,600,758	-		GFF3556	0.10	-0.1
3,600,759	-		GFF3556	0.11	-0.3
3,600,786	+		GFF3556	0.13	-1.7
3,600,787	-		GFF3556	0.13	-1.8
3,600,794	-		GFF3556	0.13	-1.0
3,600,794	-		GFF3556	0.13	+0.3
3,600,796	+		GFF3556	0.14	-2.0
3,600,796	+		GFF3556	0.14	-1.9
3,600,796	+		GFF3556	0.14	-1.2
3,600,799	+		GFF3556	0.14	+0.5
3,600,804	+		GFF3556	0.14	-1.6
3,600,804	+		GFF3556	0.14	-2.2
3,600,804	-		GFF3556	0.14	+0.9
3,600,809	+		GFF3556	0.15	-0.8
3,600,809	+		GFF3556	0.15	-0.9
3,600,809	+		GFF3556	0.15	+0.2
3,600,812	-		GFF3556	0.15	+0.5
3,600,812	-		GFF3556	0.15	-0.5
3,600,812	-		GFF3556	0.15	+0.3
3,600,812	-		GFF3556	0.15	+0.2
3,600,812	-		GFF3556	0.15	-1.3
3,600,812	-		GFF3556	0.15	-0.1
3,600,812	-		GFF3556	0.15	+0.3
3,600,812	-		GFF3556	0.15	-1.2
3,600,812	-		GFF3556	0.15	+0.7
3,600,812	-		GFF3556	0.15	-1.5
3,600,812	-		GFF3556	0.15	-1.5
3,600,812	-		GFF3556	0.15	-2.8
3,600,812	-		GFF3556	0.15	+0.5
3,600,812	-		GFF3556	0.15	-0.9
3,600,812	-		GFF3556	0.15	-1.7
3,600,817	-		GFF3556	0.15	+0.4
3,600,830	-		GFF3556	0.16	-2.1
3,600,855	+		GFF3556	0.18	-0.6
3,600,855	+		GFF3556	0.18	-0.2
3,600,855	+		GFF3556	0.18	+0.3
3,600,855	+		GFF3556	0.18	-1.4
3,600,855	+		GFF3556	0.18	+0.0
3,600,855	+		GFF3556	0.18	-2.0
3,600,863	-		GFF3556	0.19	+1.6
3,600,863	-		GFF3556	0.19	-2.5
3,600,863	-		GFF3556	0.19	-2.5
3,600,863	-		GFF3556	0.19	-0.0
3,600,863	-		GFF3556	0.19	-0.9
3,600,863	-		GFF3556	0.19	+0.6
3,600,863	-		GFF3556	0.19	-1.1
3,600,863	-		GFF3556	0.19	-1.5
3,600,863	-		GFF3556	0.19	+0.5
3,600,863	-		GFF3556	0.19	-0.7
3,600,863	-		GFF3556	0.19	-0.3
3,600,863	-		GFF3556	0.19	-0.7
3,600,868	-		GFF3556	0.19	-1.6
3,600,868	-		GFF3556	0.19	+0.5
3,600,876	+		GFF3556	0.20	-1.6
3,600,895	+		GFF3556	0.22	+0.7
3,600,895	+		GFF3556	0.22	+0.5
3,600,903	+		GFF3556	0.22	-1.3
3,600,903	-		GFF3556	0.22	-1.9
3,600,903	-		GFF3556	0.22	+0.2
3,600,904	+		GFF3556	0.22	-1.6
3,600,911	-		GFF3556	0.23	-1.5
3,600,911	-		GFF3556	0.23	-0.2
3,600,917	-		GFF3556	0.23	-2.1
3,600,988	-		GFF3556	0.29	-2.0
3,600,988	-		GFF3556	0.29	-0.6
3,601,001	-		GFF3556	0.30	+0.2
3,601,020	-		GFF3556	0.32	-1.9
3,601,038	-		GFF3556	0.33	-0.4
3,601,088	-		GFF3556	0.37	-1.4
3,601,101	-		GFF3556	0.38	-2.2
3,601,113	-		GFF3556	0.39	-2.0
3,601,128	-		GFF3556	0.41	-0.5
3,601,128	-		GFF3556	0.41	-1.3
3,601,151	-		GFF3556	0.42	-0.1
3,601,158	-		GFF3556	0.43	-2.7
3,601,168	-		GFF3556	0.44	-1.4
3,601,210	-		GFF3556	0.47	-2.2
3,601,245	-		GFF3556	0.50	-1.3
3,601,247	+		GFF3556	0.50	-1.6
3,601,279	+		GFF3556	0.53	-1.2
3,601,279	+		GFF3556	0.53	-2.2
3,601,292	-		GFF3556	0.54	+1.1
3,601,293	+		GFF3556	0.54	-1.1
3,601,296	-		GFF3556	0.54	+0.8
3,601,303	+		GFF3556	0.55	-1.9
3,601,303	+		GFF3556	0.55	-2.7
3,601,311	-		GFF3556	0.55	-0.4
3,601,311	-		GFF3556	0.55	+0.6
3,601,313	+		GFF3556	0.56	-2.7
3,601,321	+		GFF3556	0.56	-2.7
3,601,321	-		GFF3556	0.56	-1.0
3,601,321	-		GFF3556	0.56	+0.2
3,601,321	-		GFF3556	0.56	-1.4
3,601,355	+		GFF3556	0.59	-0.7
3,601,355	-		GFF3556	0.59	-2.1
3,601,357	+		GFF3556	0.59	-0.4
3,601,358	-		GFF3556	0.59	-0.6
3,601,358	-		GFF3556	0.59	-1.9
3,601,358	-		GFF3556	0.59	-0.7
3,601,364	-		GFF3556	0.60	+0.3
3,601,369	-		GFF3556	0.60	-2.2
3,601,369	-		GFF3556	0.60	+0.2
3,601,375	+		GFF3556	0.61	-1.3
3,601,375	+		GFF3556	0.61	-1.1