Strain Fitness in Sphingobium sp. HT1-2 around GFF3512

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,550,104	-		GFF3511	0.11	-2.5
3,550,124	-		GFF3511	0.13	-0.8
3,550,171	+		GFF3511	0.17	-1.1
3,550,177	+		GFF3511	0.18	-0.7
3,550,182	+		GFF3511	0.18	-0.9
3,550,182	+		GFF3511	0.18	+0.1
3,550,185	-		GFF3511	0.18	-1.8
3,550,187	+		GFF3511	0.18	-1.0
3,550,187	+		GFF3511	0.18	-1.0
3,550,187	+		GFF3511	0.18	-0.3
3,550,187	+		GFF3511	0.18	+1.7
3,550,187	+		GFF3511	0.18	+1.1
3,550,190	-		GFF3511	0.19	-0.9
3,550,190	-		GFF3511	0.19	-0.4
3,550,190	-		GFF3511	0.19	-0.3
3,550,195	-		GFF3511	0.19	-1.2
3,550,195	-		GFF3511	0.19	+1.4
3,550,195	-		GFF3511	0.19	+0.7
3,550,200	-		GFF3511	0.20	+0.4
3,550,214	+		GFF3511	0.21	-0.3
3,550,216	-		GFF3511	0.21	-0.7
3,550,220	+		GFF3511	0.21	-1.0
3,550,222	+		GFF3511	0.22	-1.0
3,550,250	+		GFF3511	0.24	-0.4
3,550,258	-		GFF3511	0.25	+1.4
3,550,260	+		GFF3511	0.25	-0.3
3,550,270	+		GFF3511	0.26	-0.8
3,550,278	-		GFF3511	0.27	+0.1
3,550,289	+		GFF3511	0.28	-0.4
3,550,290	+		GFF3511	0.28	+1.4
3,550,290	+		GFF3511	0.28	+0.1
3,550,297	-		GFF3511	0.28	-0.9
3,550,317	-		GFF3511	0.30	-0.4
3,550,345	+		GFF3511	0.33	-0.3
3,550,362	-		GFF3511	0.34	+0.4
3,550,376	-		GFF3511	0.35	-0.5
3,550,391	-		GFF3511	0.37	+0.6
3,550,393	+		GFF3511	0.37	-1.4
3,550,393	+		GFF3511	0.37	-0.2
3,550,394	+		GFF3511	0.37	-0.0
3,550,399	+		GFF3511	0.37	-0.1
3,550,401	-		GFF3511	0.38	-0.2
3,550,416	+		GFF3511	0.39	-0.2
3,550,424	-		GFF3511	0.40	+0.9
3,550,460	+		GFF3511	0.43	-0.5
3,550,470	+		GFF3511	0.44	-0.4
3,550,474	+		GFF3511	0.44	-0.4
3,550,474	+		GFF3511	0.44	-1.9
3,550,506	+		GFF3511	0.47	-0.2
3,550,506	+		GFF3511	0.47	-0.7
3,550,514	-		GFF3511	0.48	-1.6
3,550,514	-		GFF3511	0.48	-0.4
3,550,527	-		GFF3511	0.49	-0.6
3,550,527	-		GFF3511	0.49	+0.3
3,550,531	-		GFF3511	0.49	+0.9
3,550,532	-		GFF3511	0.49	-0.1
3,550,557	+		GFF3511	0.52	-1.8
3,550,557	+		GFF3511	0.52	+0.1
3,550,584	-		GFF3511	0.54	+0.7
3,550,584	-		GFF3511	0.54	-0.6
3,550,600	+		GFF3511	0.55	+0.4
3,550,600	+		GFF3511	0.55	+0.5
3,550,600	+		GFF3511	0.55	+0.3
3,550,608	-		GFF3511	0.56	-0.3
3,550,608	-		GFF3511	0.56	-2.1
3,550,608	-		GFF3511	0.56	+0.5
3,550,608	-		GFF3511	0.56	-1.7
3,550,608	-		GFF3511	0.56	+1.3
3,550,608	-		GFF3511	0.56	+1.0
3,550,608	-		GFF3511	0.56	-0.4
3,550,608	-		GFF3511	0.56	-2.1
3,550,608	-		GFF3511	0.56	-1.8
3,550,610	+		GFF3511	0.56	+0.6
3,550,699	+		GFF3511	0.64	-0.6
3,550,705	+		GFF3511	0.65	-1.0
3,550,705	+		GFF3511	0.65	-0.1
3,550,705	+		GFF3511	0.65	-0.7
3,550,705	+		GFF3511	0.65	-0.6
3,550,705	+		GFF3511	0.65	-1.7
3,550,706	-		GFF3511	0.65	-0.8
3,550,714	+		GFF3511	0.66	+1.6
3,550,715	-		GFF3511	0.66	-2.3
3,550,717	-		GFF3511	0.66	-1.7
3,550,719	+		GFF3511	0.66	-0.1
3,550,719	+		GFF3511	0.66	-0.2
3,550,719	+		GFF3511	0.66	-2.3
3,550,719	+		GFF3511	0.66	+0.2
3,550,719	+		GFF3511	0.66	-0.6
3,550,719	+		GFF3511	0.66	-0.6
3,550,719	+		GFF3511	0.66	+0.2
3,550,719	+		GFF3511	0.66	+0.4
3,550,724	+		GFF3511	0.66	+1.3
3,550,727	-		GFF3511	0.67	-0.2
3,550,727	-		GFF3511	0.67	-0.2
3,550,728	+		GFF3511	0.67	-1.3
3,550,732	-		GFF3511	0.67	-0.5
3,550,736	+		GFF3511	0.68	-0.9
3,550,736	-		GFF3511	0.68	+0.6
3,550,736	-		GFF3511	0.68	+0.1
3,550,738	+		GFF3511	0.68	+0.9
3,550,746	-		GFF3511	0.68	-1.0
3,550,813	-		GFF3511	0.74	-0.7
3,550,819	-		GFF3511	0.75	-1.6
3,550,833	+		GFF3511	0.76	-1.7
3,550,846	-		GFF3511	0.77	-0.1
3,550,846	-		GFF3511	0.77	+0.4
3,550,899	+		GFF3511	0.82	-1.6
3,550,899	+		GFF3511	0.82	-1.2
3,550,899	+		GFF3511	0.82	-0.1
3,550,899	+		GFF3511	0.82	+1.1
3,550,899	+		GFF3511	0.82	-0.9
3,550,902	-		GFF3511	0.82	-0.3
3,550,904	+		GFF3511	0.83	-0.1
3,550,904	+		GFF3511	0.83	+0.4
3,550,904	+		GFF3511	0.83	+0.5
3,550,904	+		GFF3511	0.83	-0.3
3,550,912	-		GFF3511	0.83	+1.4
3,550,912	-		GFF3511	0.83	+0.0
3,550,912	-		GFF3511	0.83	-0.7
3,550,920	-		GFF3511	0.84	+1.0
3,550,935	+		GFF3511	0.85	-0.9
3,550,936	+		GFF3511	0.85	-1.4
3,550,942	+		GFF3511	0.86	-0.4
3,550,943	-		GFF3511	0.86	-1.0
3,550,950	+		GFF3511	0.87	+0.1
3,550,950	+		GFF3511	0.87	-0.2
3,550,950	+		GFF3511	0.87	-0.8
3,550,958	-		GFF3511	0.87	+0.4
3,550,969	+		GFF3511	0.88	-0.7
3,550,977	-		GFF3511	0.89	+0.6
3,550,977	-		GFF3511	0.89	+0.1
3,550,988	+				-2.2
3,550,988	+				+0.0
3,550,988	+				-1.4
3,550,996	-				-0.4
3,551,003	+				+1.1
3,551,003	+				-2.1
3,551,006	-				-2.7
3,551,011	-				-1.0
3,551,011	-				-1.2
3,551,011	-				-1.3
3,551,011	-				+0.0
3,551,011	-				-1.2
3,551,011	-				-1.1
3,551,011	-				-0.9
3,551,058	+				+1.3
3,551,058	+				-1.8
3,551,058	+				-0.7
3,551,058	+				-0.6
3,551,058	+				-0.5
3,551,058	+				-1.4
3,551,058	+				+1.4
3,551,058	+				-0.2
3,551,058	+				-0.9
3,551,058	+				-0.7
3,551,058	+				-1.9
3,551,058	+				-0.8
3,551,066	-				+0.2
3,551,066	-				+1.2
3,551,066	-				+0.3
3,551,066	-				+0.2
3,551,066	-				+0.1
3,551,066	-				-2.8
3,551,066	-				+0.0
3,551,066	-				-0.4
3,551,066	-				+0.3
3,551,075	+				-1.9
3,551,075	+				+0.7
3,551,075	+				-1.0
3,551,075	+				-2.2
3,551,075	+				+0.1
3,551,075	+				-0.7
3,551,083	-				+0.1
3,551,083	-				-0.1
3,551,094	+				-0.3
3,551,094	+				-1.5
3,551,094	+				-0.9
3,551,094	+				-0.3
3,551,102	-				-0.3
3,551,102	-				+1.0
3,551,102	-				-0.3
3,551,106	+				+0.6
3,551,106	+				-0.2
3,551,109	-				-0.2
3,551,114	-				-0.2
3,551,114	-				+0.3
3,551,117	+				-0.8
3,551,117	+				-1.6
3,551,131	+				+0.2
3,551,186	+				+0.4
3,551,207	-		GFF3512	0.11	+0.1
3,551,225	+		GFF3512	0.13	+0.3
3,551,225	+		GFF3512	0.13	-0.6
3,551,225	+		GFF3512	0.13	-1.5
3,551,225	+		GFF3512	0.13	-0.0
3,551,233	-		GFF3512	0.14	+0.4
3,551,251	-		GFF3512	0.16	-1.9
3,551,256	+		GFF3512	0.16	-0.7
3,551,256	+		GFF3512	0.16	-0.3
3,551,261	+		GFF3512	0.17	+0.5
3,551,263	-		GFF3512	0.17	-0.1
3,551,264	-		GFF3512	0.17	-0.2
3,551,264	-		GFF3512	0.17	+0.3
3,551,264	-		GFF3512	0.17	-0.2
3,551,265	+		GFF3512	0.17	-0.6
3,551,265	+		GFF3512	0.17	-0.9
3,551,297	+		GFF3512	0.20	+0.1
3,551,297	+		GFF3512	0.20	-0.2
3,551,302	+		GFF3512	0.21	-2.8
3,551,302	+		GFF3512	0.21	+1.1
3,551,303	-		GFF3512	0.21	-1.2
3,551,305	-		GFF3512	0.21	-0.1
3,551,310	-		GFF3512	0.22	-0.1
3,551,310	-		GFF3512	0.22	+0.5
3,551,316	-		GFF3512	0.22	-1.2
3,551,316	-		GFF3512	0.22	-1.7
3,551,356	+		GFF3512	0.26	-0.9
3,551,364	-		GFF3512	0.27	+0.3
3,551,370	+		GFF3512	0.28	+1.0
3,551,376	-		GFF3512	0.28	+0.5
3,551,376	-		GFF3512	0.28	-1.0
3,551,380	+		GFF3512	0.29	+1.0
3,551,380	+		GFF3512	0.29	-0.3
3,551,380	+		GFF3512	0.29	+0.1
3,551,385	-		GFF3512	0.29	-0.8
3,551,388	-		GFF3512	0.29	-0.6
3,551,388	-		GFF3512	0.29	-1.8
3,551,388	-		GFF3512	0.29	+0.8
3,551,388	-		GFF3512	0.29	-1.6
3,551,408	+		GFF3512	0.31	+0.7
3,551,447	+		GFF3512	0.35	-1.4
3,551,447	+		GFF3512	0.35	+0.7
3,551,447	+		GFF3512	0.35	-0.1
3,551,447	+		GFF3512	0.35	-0.7
3,551,454	+		GFF3512	0.36	-1.1
3,551,455	-		GFF3512	0.36	+0.3
3,551,464	+		GFF3512	0.37	-0.7
3,551,472	-		GFF3512	0.38	-0.9
3,551,472	-		GFF3512	0.38	-2.9
3,551,543	+		GFF3512	0.45	-1.4
3,551,551	-		GFF3512	0.46	-0.0
3,551,563	+		GFF3512	0.47	-0.0
3,551,563	+		GFF3512	0.47	-1.1
3,551,571	-		GFF3512	0.48	-1.5
3,551,571	-		GFF3512	0.48	+0.4
3,551,571	-		GFF3512	0.48	-0.2
3,551,577	-		GFF3512	0.48	-0.7
3,551,577	-		GFF3512	0.48	-1.1
3,551,577	-		GFF3512	0.48	-0.6
3,551,578	-		GFF3512	0.48	-0.1
3,551,609	+		GFF3512	0.52	-1.2
3,551,609	+		GFF3512	0.52	-1.0
3,551,641	+		GFF3512	0.55	+0.2
3,551,658	+		GFF3512	0.57	+0.4
3,551,658	+		GFF3512	0.57	-0.5
3,551,658	+		GFF3512	0.57	+0.5
3,551,658	+		GFF3512	0.57	-0.1
3,551,660	+		GFF3512	0.57	-0.2
3,551,661	-		GFF3512	0.57	+0.7
3,551,666	-		GFF3512	0.57	-1.4
3,551,666	-		GFF3512	0.57	-0.4
3,551,666	-		GFF3512	0.57	-1.1
3,551,672	+		GFF3512	0.58	-0.8
3,551,672	+		GFF3512	0.58	+0.3
3,551,682	-		GFF3512	0.59	-1.7
3,551,692	-		GFF3512	0.60	-0.2
3,551,692	-		GFF3512	0.60	-0.6
3,551,713	+		GFF3512	0.62	-0.1
3,551,715	+		GFF3512	0.62	-0.6
3,551,715	+		GFF3512	0.62	-2.1
3,551,715	+		GFF3512	0.62	-1.1
3,551,721	-		GFF3512	0.63	-1.3
3,551,723	-		GFF3512	0.63	-1.1
3,551,723	-		GFF3512	0.63	-1.0
3,551,725	+		GFF3512	0.63	+0.3
3,551,725	+		GFF3512	0.63	-0.2
3,551,725	+		GFF3512	0.63	+0.0
3,551,725	+		GFF3512	0.63	-0.3
3,551,725	+		GFF3512	0.63	-0.2
3,551,725	+		GFF3512	0.63	-0.0
3,551,725	+		GFF3512	0.63	-1.1
3,551,733	-		GFF3512	0.64	-0.3
3,551,733	-		GFF3512	0.64	-0.6
3,551,733	-		GFF3512	0.64	-0.7
3,551,733	-		GFF3512	0.64	-2.0
3,551,733	-		GFF3512	0.64	+0.2
3,551,733	-		GFF3512	0.64	-0.2
3,551,752	+		GFF3512	0.66	+0.1
3,551,757	+		GFF3512	0.66	-0.8
3,551,757	+		GFF3512	0.66	-2.4
3,551,758	-		GFF3512	0.67	+1.1
3,551,760	-		GFF3512	0.67	-0.4
3,551,760	-		GFF3512	0.67	+0.8
3,551,760	-		GFF3512	0.67	-0.9
3,551,760	-		GFF3512	0.67	-1.0
3,551,760	-		GFF3512	0.67	-0.8
3,551,765	-		GFF3512	0.67	-0.3
3,551,767	-		GFF3512	0.67	-0.9
3,551,857	-		GFF3512	0.77	+1.3
3,551,859	+		GFF3512	0.77	-0.1
3,551,859	+		GFF3512	0.77	-1.9
3,551,867	-		GFF3512	0.78	-0.4
3,551,896	-		GFF3512	0.80	+0.6
3,551,896	-		GFF3512	0.80	-1.8
3,551,899	+		GFF3512	0.81	-0.3
3,551,945	-		GFF3512	0.85	+0.1
3,551,976	+		GFF3512	0.88	+1.1
3,551,981	+		GFF3512	0.89	+0.1
3,551,984	-		GFF3512	0.89	-2.5
3,551,984	-		GFF3512	0.89	-0.4
3,551,984	-		GFF3512	0.89	-0.3
3,551,989	-		GFF3512	0.90	+0.0
3,551,989	-		GFF3512	0.90	-0.4
3,552,010	+				+0.6
3,552,011	-				+0.5
3,552,016	+				+0.4
3,552,043	-				-0.3
3,552,060	+				+0.4
3,552,060	+				-1.0
3,552,060	+				+0.3
3,552,068	-				+0.8
3,552,068	-				+0.8
3,552,068	-				-0.4
3,552,068	-				-2.5
3,552,070	+				-0.0
3,552,070	+				-0.8
3,552,078	-				+0.4
3,552,078	-				-0.6
3,552,097	+				+0.1
3,552,097	+				-1.0
3,552,121	+				-1.9
3,552,121	+				-1.1
3,552,129	-				-0.1
3,552,176	-		GFF3513	0.14	-2.4
3,552,176	-		GFF3513	0.14	-0.3
3,552,176	-		GFF3513	0.14	-1.3
3,552,187	+		GFF3513	0.16	+1.2
3,552,202	+		GFF3513	0.18	-0.3
3,552,207	+		GFF3513	0.19	-0.8
3,552,210	-		GFF3513	0.19	-0.5
3,552,212	+		GFF3513	0.19	+0.9
3,552,213	+		GFF3513	0.20	-0.0
3,552,215	-		GFF3513	0.20	+0.2
3,552,216	-		GFF3513	0.20	-0.2
3,552,230	+		GFF3513	0.22	-0.3
3,552,240	-		GFF3513	0.23	+0.7
3,552,245	+		GFF3513	0.24	+0.3
3,552,268	+		GFF3513	0.27	+0.7
3,552,276	+		GFF3513	0.29	-1.8
3,552,276	-		GFF3513	0.29	+1.5
3,552,280	+		GFF3513	0.29	-0.5
3,552,280	+		GFF3513	0.29	-0.0
3,552,285	+		GFF3513	0.30	+1.3
3,552,285	-		GFF3513	0.30	-0.4
3,552,293	-		GFF3513	0.31	+0.0
3,552,318	+		GFF3513	0.35	-0.8
3,552,321	+		GFF3513	0.35	-1.7
3,552,326	+		GFF3513	0.36	-0.0
3,552,329	-		GFF3513	0.36	-1.0
3,552,331	+		GFF3513	0.36	-0.9
3,552,331	+		GFF3513	0.36	+0.7
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3,552,346	+		GFF3513	0.39	-1.9
3,552,346	+		GFF3513	0.39	-1.5
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3,552,354	-		GFF3513	0.40	-0.1
3,552,354	-		GFF3513	0.40	+1.0
3,552,354	-		GFF3513	0.40	-1.0
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3,552,354	-		GFF3513	0.40	-1.7
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3,552,367	+		GFF3513	0.42	-0.3
3,552,375	-		GFF3513	0.43	-1.0
3,552,393	+		GFF3513	0.45	-2.1
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3,552,452	+		GFF3513	0.54	-0.4
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3,552,459	-		GFF3513	0.55	-0.1
3,552,488	-		GFF3513	0.59	-2.5
3,552,515	+		GFF3513	0.63	+0.6
3,552,518	+		GFF3513	0.63	+0.1
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3,552,529	+		GFF3513	0.65	-0.0
3,552,529	+		GFF3513	0.65	+0.1
3,552,576	+		GFF3513	0.72	-2.2
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3,552,591	+		GFF3513	0.74	-1.4
3,552,591	+		GFF3513	0.74	-0.1
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3,552,591	+		GFF3513	0.74	+0.8
3,552,591	+		GFF3513	0.74	-0.7
3,552,591	+		GFF3513	0.74	-0.6
3,552,591	+		GFF3513	0.74	-2.2
3,552,591	+		GFF3513	0.74	-1.5
3,552,594	-		GFF3513	0.74	-0.3
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3,552,599	-		GFF3513	0.75	-0.4
3,552,599	-		GFF3513	0.75	+0.2
3,552,599	-		GFF3513	0.75	+0.0
3,552,599	-		GFF3513	0.75	-0.5
3,552,618	+		GFF3513	0.78	-3.2
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3,552,626	-		GFF3513	0.79	-0.0
3,552,681	+		GFF3513	0.87	-0.3
3,552,691	+		GFF3513	0.88	+0.4
3,552,691	+		GFF3513	0.88	+0.6
3,552,691	+		GFF3513	0.88	+0.4
3,552,693	+		GFF3513	0.89	+1.3
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3,552,699	-		GFF3513	0.89	-0.4
3,552,699	-		GFF3513	0.89	-1.0
3,552,706	-				-0.7
3,552,715	+				-1.2
3,552,716	+				-0.9
3,552,716	+				+1.1
3,552,724	-				+0.8
3,552,735	+				-0.6
3,552,739	-				-0.3
3,552,743	-				-0.3
3,552,751	-				+0.8
3,552,760	+				-1.1
3,552,768	-				-1.2
3,552,768	-				+0.4
3,552,770	+				-0.4
3,552,770	+				-1.1
3,552,778	-				+0.5
3,552,779	+				-2.1
3,552,791	+				+0.7
3,552,791	+				+0.2
3,552,801	-				-0.9
3,552,801	-				+0.1
3,552,804	-				-1.2
3,552,812	-				+1.2
3,552,850	-		GFF3514	0.17	-0.1
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3,552,870	+		GFF3514	0.21	-1.1
3,552,870	+		GFF3514	0.21	-0.5
3,552,878	+		GFF3514	0.23	-0.3
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3,552,891	-		GFF3514	0.25	-0.7
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3,553,032	+		GFF3514	0.56	-1.4
3,553,032	+		GFF3514	0.56	+0.1
3,553,032	+		GFF3514	0.56	-1.4
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3,553,040	-		GFF3514	0.57	-0.3
3,553,040	-		GFF3514	0.57	+0.1
3,553,040	-		GFF3514	0.57	-0.7
3,553,040	-		GFF3514	0.57	+0.8
3,553,040	-		GFF3514	0.57	-0.7
3,553,040	-		GFF3514	0.57	-2.5
3,553,040	-		GFF3514	0.57	-0.9
3,553,040	-		GFF3514	0.57	-0.6
3,553,040	-		GFF3514	0.57	+0.9
3,553,040	-		GFF3514	0.57	-0.1
3,553,040	-		GFF3514	0.57	-1.1
3,553,065	+		GFF3514	0.63	-0.7
3,553,065	+		GFF3514	0.63	+0.6
3,553,078	-		GFF3514	0.65	+0.1