Strain Fitness in Sphingobium sp. HT1-2 around GFF3509

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,547,828	-				-0.7
3,547,833	-				+0.6
3,547,854	-				+0.7
3,547,855	+				-0.6
3,547,855	+				-0.0
3,547,884	-				-0.7
3,547,886	+				-0.3
3,547,886	+				-0.1
3,547,886	+				-0.4
3,547,886	+				-0.1
3,547,886	+				-1.3
3,547,894	-				-0.8
3,547,894	-				+0.3
3,547,928	-				-0.3
3,547,928	-				-1.5
3,547,930	+				-0.5
3,547,930	+				+1.3
3,547,932	+				-0.6
3,547,932	+				-0.9
3,547,932	+				+0.2
3,547,932	+				+1.0
3,547,932	+				+1.0
3,547,932	+				-1.0
3,547,932	+				-0.8
3,547,941	+				-0.8
3,547,958	+				-0.5
3,547,964	+				-0.4
3,547,982	+				-0.6
3,547,982	+				+0.7
3,547,990	-				-0.8
3,547,990	-				-2.7
3,547,997	+				-1.1
3,548,033	+				+0.6
3,548,035	+				-0.1
3,548,039	-				-0.3
3,548,044	-				-1.7
3,548,047	+				+1.4
3,548,060	-				-0.9
3,548,060	-				-0.1
3,548,075	+				-0.5
3,548,077	+				-1.2
3,548,087	+				-2.3
3,548,095	-				-1.0
3,548,097	+				-3.4
3,548,102	+				-0.2
3,548,102	+				+0.4
3,548,110	-		GFF3508	0.10	-0.5
3,548,110	-		GFF3508	0.10	+0.1
3,548,118	+		GFF3508	0.11	-0.7
3,548,118	+		GFF3508	0.11	+0.9
3,548,123	+		GFF3508	0.12	+0.9
3,548,124	-		GFF3508	0.12	+0.2
3,548,124	-		GFF3508	0.12	+0.5
3,548,126	-		GFF3508	0.12	+0.5
3,548,126	-		GFF3508	0.12	+0.9
3,548,126	-		GFF3508	0.12	+0.4
3,548,126	-		GFF3508	0.12	-0.8
3,548,145	+		GFF3508	0.15	-0.1
3,548,179	+		GFF3508	0.20	-0.4
3,548,179	+		GFF3508	0.20	-0.2
3,548,181	+		GFF3508	0.20	-1.4
3,548,184	-		GFF3508	0.20	-0.2
3,548,186	+		GFF3508	0.20	-1.8
3,548,199	-		GFF3508	0.22	-0.6
3,548,199	-		GFF3508	0.22	-0.5
3,548,201	+		GFF3508	0.22	-1.9
3,548,206	+		GFF3508	0.23	+0.4
3,548,206	+		GFF3508	0.23	+0.5
3,548,206	+		GFF3508	0.23	+0.8
3,548,209	-		GFF3508	0.24	-1.8
3,548,214	-		GFF3508	0.24	+0.0
3,548,214	-		GFF3508	0.24	+1.0
3,548,214	-		GFF3508	0.24	-1.1
3,548,214	-		GFF3508	0.24	-0.2
3,548,214	-		GFF3508	0.24	-0.4
3,548,214	-		GFF3508	0.24	+1.4
3,548,214	-		GFF3508	0.24	-0.6
3,548,214	-		GFF3508	0.24	+1.1
3,548,230	+		GFF3508	0.26	-1.5
3,548,235	+		GFF3508	0.27	+0.1
3,548,240	+		GFF3508	0.28	+0.3
3,548,241	+		GFF3508	0.28	-0.2
3,548,243	-		GFF3508	0.28	-1.4
3,548,245	+		GFF3508	0.28	+0.6
3,548,245	+		GFF3508	0.28	+0.6
3,548,245	+		GFF3508	0.28	-1.0
3,548,248	-		GFF3508	0.29	+0.6
3,548,252	+		GFF3508	0.29	-1.7
3,548,253	-		GFF3508	0.29	+0.5
3,548,253	-		GFF3508	0.29	-0.4
3,548,254	-		GFF3508	0.30	-0.1
3,548,254	-		GFF3508	0.30	-1.0
3,548,254	-		GFF3508	0.30	+0.1
3,548,259	+		GFF3508	0.30	-0.9
3,548,274	+		GFF3508	0.32	+0.0
3,548,274	+		GFF3508	0.32	+0.2
3,548,282	-		GFF3508	0.33	+0.6
3,548,282	-		GFF3508	0.33	+0.1
3,548,299	+		GFF3508	0.36	+0.6
3,548,299	+		GFF3508	0.36	+0.3
3,548,299	+		GFF3508	0.36	+1.1
3,548,299	+		GFF3508	0.36	-1.7
3,548,299	+		GFF3508	0.36	+0.5
3,548,299	+		GFF3508	0.36	-0.9
3,548,299	+		GFF3508	0.36	-0.2
3,548,299	+		GFF3508	0.36	-0.9
3,548,299	+		GFF3508	0.36	-2.2
3,548,304	+		GFF3508	0.36	-0.4
3,548,307	-		GFF3508	0.37	-0.3
3,548,307	-		GFF3508	0.37	+1.0
3,548,307	-		GFF3508	0.37	-0.9
3,548,307	-		GFF3508	0.37	-0.2
3,548,307	-		GFF3508	0.37	+0.2
3,548,307	-		GFF3508	0.37	-0.3
3,548,322	+		GFF3508	0.39	-0.6
3,548,362	+		GFF3508	0.44	+0.3
3,548,362	+		GFF3508	0.44	+0.7
3,548,362	+		GFF3508	0.44	-1.4
3,548,362	+		GFF3508	0.44	-1.4
3,548,363	-		GFF3508	0.44	+1.5
3,548,365	-		GFF3508	0.44	-2.3
3,548,370	-		GFF3508	0.45	+0.3
3,548,370	-		GFF3508	0.45	-1.0
3,548,370	-		GFF3508	0.45	-1.2
3,548,370	-		GFF3508	0.45	-0.6
3,548,389	+		GFF3508	0.48	-0.5
3,548,389	+		GFF3508	0.48	+0.1
3,548,395	+		GFF3508	0.48	-2.1
3,548,396	+		GFF3508	0.49	-1.4
3,548,396	+		GFF3508	0.49	-0.2
3,548,419	+		GFF3508	0.52	-1.1
3,548,429	+		GFF3508	0.53	+0.4
3,548,429	+		GFF3508	0.53	+0.6
3,548,437	+		GFF3508	0.54	+0.4
3,548,452	-		GFF3508	0.56	-0.4
3,548,457	+		GFF3508	0.57	-0.8
3,548,459	+		GFF3508	0.57	-0.3
3,548,465	-		GFF3508	0.58	-1.0
3,548,465	-		GFF3508	0.58	+1.0
3,548,467	+		GFF3508	0.58	-1.3
3,548,475	-		GFF3508	0.59	-0.1
3,548,483	+		GFF3508	0.60	-0.9
3,548,490	-		GFF3508	0.61	-0.6
3,548,490	-		GFF3508	0.61	-0.2
3,548,491	-		GFF3508	0.61	-0.2
3,548,491	-		GFF3508	0.61	-0.3
3,548,494	+		GFF3508	0.62	+0.3
3,548,535	+		GFF3508	0.67	+0.0
3,548,539	-		GFF3508	0.68	+0.1
3,548,585	-		GFF3508	0.74	-2.1
3,548,592	+		GFF3508	0.75	-0.2
3,548,592	+		GFF3508	0.75	-0.1
3,548,596	+		GFF3508	0.75	-0.4
3,548,596	+		GFF3508	0.75	+0.3
3,548,596	+		GFF3508	0.75	+1.5
3,548,604	-		GFF3508	0.76	+0.5
3,548,689	+		GFF3508	0.88	+1.9
3,548,697	-		GFF3508	0.89	+1.0
3,548,697	-		GFF3508	0.89	+0.1
3,548,697	-		GFF3508	0.89	+1.9
3,548,704	+		GFF3508	0.90	+0.1
3,548,704	+		GFF3508	0.90	-0.7
3,548,712	-				-1.1
3,548,712	-				-1.9
3,548,712	-				-1.3
3,548,712	-				-1.8
3,548,712	-				-1.0
3,548,712	-				+0.9
3,548,712	-				+0.6
3,548,753	+				-1.3
3,548,753	+				-1.2
3,548,753	+				-0.2
3,548,756	-				-2.1
3,548,761	-				-1.0
3,548,761	-				-0.7
3,548,761	-				-0.7
3,548,774	+				-1.3
3,548,782	-				+0.0
3,548,785	+				-1.6
3,548,792	+				-0.2
3,548,794	+				+0.3
3,548,794	-				+0.1
3,548,794	-				+0.8
3,548,799	+				+0.1
3,548,807	+				+0.9
3,548,807	-				-1.2
3,548,817	+				-0.7
3,548,821	+				-0.6
3,548,841	+				-0.3
3,548,843	+				-0.9
3,548,843	+				+0.3
3,548,843	+				-1.1
3,548,843	+				-0.6
3,548,843	+				-0.1
3,548,843	+				-0.3
3,548,843	+				-2.4
3,548,843	+				+0.0
3,548,843	+				+0.5
3,548,843	+				+0.0
3,548,843	+				-0.0
3,548,843	+				-0.6
3,548,843	-				-0.3
3,548,851	-		GFF3509	0.10	-0.2
3,548,851	-		GFF3509	0.10	+0.5
3,548,851	-		GFF3509	0.10	+0.3
3,548,851	-		GFF3509	0.10	-2.4
3,548,851	-		GFF3509	0.10	-0.0
3,548,851	-		GFF3509	0.10	-1.5
3,548,851	-		GFF3509	0.10	+0.6
3,548,851	-		GFF3509	0.10	+1.6
3,548,851	-		GFF3509	0.10	-1.0
3,548,853	+		GFF3509	0.11	-1.9
3,548,858	+		GFF3509	0.11	-1.9
3,548,861	-		GFF3509	0.12	-0.6
3,548,861	-		GFF3509	0.12	+0.0
3,548,878	+		GFF3509	0.14	+0.5
3,548,916	+		GFF3509	0.19	+0.1
3,548,951	+		GFF3509	0.24	-2.3
3,548,970	-		GFF3509	0.27	+0.1
3,548,984	+		GFF3509	0.29	+0.1
3,548,984	+		GFF3509	0.29	-0.7
3,548,984	+		GFF3509	0.29	-0.1
3,548,984	+		GFF3509	0.29	-1.0
3,548,984	-		GFF3509	0.29	+0.3
3,548,992	-		GFF3509	0.30	-0.8
3,548,994	-		GFF3509	0.30	+0.6
3,548,994	-		GFF3509	0.30	+0.8
3,549,006	+		GFF3509	0.32	+0.3
3,549,006	+		GFF3509	0.32	-0.9
3,549,007	+		GFF3509	0.32	-0.6
3,549,014	-		GFF3509	0.33	-0.2
3,549,019	+		GFF3509	0.34	+0.5
3,549,043	+		GFF3509	0.37	-0.0
3,549,049	+		GFF3509	0.38	+0.9
3,549,057	-		GFF3509	0.39	-0.1
3,549,057	-		GFF3509	0.39	-0.1
3,549,057	-		GFF3509	0.39	-2.3
3,549,057	-		GFF3509	0.39	+1.1
3,549,083	+		GFF3509	0.42	-0.7
3,549,134	+		GFF3509	0.50	-0.1
3,549,134	-		GFF3509	0.50	+0.3
3,549,134	-		GFF3509	0.50	-2.1
3,549,142	+		GFF3509	0.51	-0.2
3,549,142	-		GFF3509	0.51	+0.4
3,549,142	-		GFF3509	0.51	-0.6
3,549,147	+		GFF3509	0.51	-0.5
3,549,155	-		GFF3509	0.52	-0.2
3,549,170	+		GFF3509	0.54	-1.2
3,549,178	-		GFF3509	0.56	-0.4
3,549,201	-		GFF3509	0.59	-0.4
3,549,203	+		GFF3509	0.59	+1.1
3,549,203	+		GFF3509	0.59	+0.1
3,549,203	+		GFF3509	0.59	-0.4
3,549,203	+		GFF3509	0.59	+0.1
3,549,203	+		GFF3509	0.59	-1.3
3,549,203	+		GFF3509	0.59	-1.0
3,549,211	-		GFF3509	0.60	-0.0
3,549,211	-		GFF3509	0.60	-0.9
3,549,211	-		GFF3509	0.60	-0.3
3,549,211	-		GFF3509	0.60	+0.4
3,549,212	+		GFF3509	0.60	-2.4
3,549,220	-		GFF3509	0.61	-0.1
3,549,254	+		GFF3509	0.66	+1.1
3,549,262	-		GFF3509	0.67	-2.0
3,549,264	+		GFF3509	0.67	-0.9
3,549,282	+		GFF3509	0.70	+0.2
3,549,325	-		GFF3509	0.76	+0.3
3,549,330	-		GFF3509	0.77	-1.4
3,549,348	+		GFF3509	0.79	-0.4
3,549,348	-		GFF3509	0.79	+0.2
3,549,348	-		GFF3509	0.79	-1.3
3,549,371	+		GFF3509	0.82	-0.4
3,549,385	+		GFF3509	0.84	+1.3
3,549,393	+		GFF3509	0.85	+1.0
3,549,393	+		GFF3509	0.85	-0.7
3,549,393	+		GFF3509	0.85	-1.5
3,549,400	+		GFF3509	0.86	-0.2
3,549,401	-		GFF3509	0.86	-0.4
3,549,401	-		GFF3509	0.86	-1.1
3,549,438	-				-0.4
3,549,440	+				-0.2
3,549,440	+				+0.2
3,549,440	+				-0.0
3,549,443	-				-0.4
3,549,443	-				-1.2
3,549,462	-				-0.5
3,549,467	-				-0.9
3,549,479	+				-2.6
3,549,483	+				+1.6
3,549,484	+				-0.2
3,549,484	+				-1.7
3,549,484	+				-0.6
3,549,491	-				-0.7
3,549,505	+				-2.1
3,549,513	+				-0.5
3,549,513	+				-0.1
3,549,513	+				-0.8
3,549,513	+				-0.6
3,549,513	-				-0.6
3,549,521	-				+0.5
3,549,521	-				-0.4
3,549,521	-				+0.1
3,549,521	-				+1.1
3,549,521	-				-1.4
3,549,521	-				-0.4
3,549,531	-				-0.9
3,549,538	-				-1.3
3,549,548	-		GFF3510	0.11	-1.7
3,549,550	+		GFF3510	0.11	-0.1
3,549,550	+		GFF3510	0.11	-0.5
3,549,579	+		GFF3510	0.17	-2.6
3,549,587	-		GFF3510	0.19	+0.9
3,549,592	+		GFF3510	0.20	-0.3
3,549,592	-		GFF3510	0.20	-0.4
3,549,600	-		GFF3510	0.21	-0.4
3,549,645	+		GFF3510	0.31	-1.8
3,549,659	+		GFF3510	0.34	+0.2
3,549,666	+		GFF3510	0.35	+1.1
3,549,667	-		GFF3510	0.35	+0.8
3,549,694	+		GFF3510	0.41	-0.4
3,549,695	+		GFF3510	0.41	-0.1
3,549,699	+		GFF3510	0.42	+0.2
3,549,704	+		GFF3510	0.43	-1.2
3,549,707	-		GFF3510	0.43	-0.7
3,549,716	+		GFF3510	0.45	-1.3
3,549,718	+		GFF3510	0.46	-0.9
3,549,724	-		GFF3510	0.47	-1.7
3,549,741	+		GFF3510	0.50	-1.3
3,549,755	+		GFF3510	0.53	+0.0
3,549,755	+		GFF3510	0.53	+0.1
3,549,755	+		GFF3510	0.53	-2.2
3,549,755	+		GFF3510	0.53	-2.7
3,549,760	+		GFF3510	0.54	+0.1
3,549,760	+		GFF3510	0.54	-0.4
3,549,763	-		GFF3510	0.55	-0.7
3,549,763	-		GFF3510	0.55	-0.3
3,549,763	-		GFF3510	0.55	-0.6
3,549,763	-		GFF3510	0.55	-0.1
3,549,763	-		GFF3510	0.55	-1.7
3,549,765	+		GFF3510	0.55	-0.9
3,549,768	-		GFF3510	0.56	-0.3
3,549,768	-		GFF3510	0.56	-0.9
3,549,768	-		GFF3510	0.56	+0.9
3,549,775	+		GFF3510	0.57	-1.2
3,549,775	+		GFF3510	0.57	+1.1
3,549,783	-		GFF3510	0.59	+0.0
3,549,783	-		GFF3510	0.59	+0.2
3,549,783	-		GFF3510	0.59	+0.3
3,549,783	-		GFF3510	0.59	-0.7
3,549,783	-		GFF3510	0.59	-1.3
3,549,785	+		GFF3510	0.59	+0.4
3,549,793	-		GFF3510	0.61	-1.1
3,549,793	-		GFF3510	0.61	-0.7
3,549,793	-		GFF3510	0.61	-1.0
3,549,849	+		GFF3510	0.72	+0.1
3,549,873	+		GFF3510	0.77	-1.5
3,549,895	+		GFF3510	0.82	+0.3
3,549,896	-		GFF3510	0.82	+1.0
3,549,896	-		GFF3510	0.82	-2.0
3,549,903	-		GFF3510	0.83	-0.4
3,549,915	+		GFF3510	0.86	+0.1
3,549,952	-				-0.7
3,549,963	-				-0.4
3,549,970	+				+0.1
3,549,972	-				+0.8
3,549,991	+				+0.5
3,549,999	-				+0.9
3,549,999	-				-0.4
3,550,023	+				-1.9
3,550,039	+				-1.0
3,550,080	+				+0.6
3,550,080	+				-1.6
3,550,088	-				-0.2
3,550,088	-				-1.3
3,550,088	-				-1.4
3,550,104	-		GFF3511	0.11	-2.5
3,550,124	-		GFF3511	0.13	-0.8
3,550,171	+		GFF3511	0.17	-1.1
3,550,177	+		GFF3511	0.18	-0.7
3,550,182	+		GFF3511	0.18	-0.9
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