Strain Fitness in Sphingobium sp. HT1-2 around GFF350

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF349 and GFF350 are separated by 102 nucleotidesGFF350 and GFF351 are separated by 1 nucleotidesGFF351 and GFF352 are separated by 9 nucleotides GFF349 - Capsule polysaccharide export protein, at 341,061 to 342,737 GFF349 GFF350 - Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB, at 342,840 to 344,135 GFF350 GFF351 - 'Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)' transl_table=11, at 344,137 to 344,577 GFF351 GFF352 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 344,587 to 345,222 GFF352 Position (kb) 342 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 341.852 kb on + strand, within GFF349at 341.868 kb on + strand, within GFF349at 341.919 kb on + strand, within GFF349at 341.932 kb on - strand, within GFF349at 341.958 kb on + strand, within GFF349at 341.966 kb on - strand, within GFF349at 342.014 kb on + strand, within GFF349at 342.167 kb on + strand, within GFF349at 342.199 kb on - strand, within GFF349at 342.204 kb on - strand, within GFF349at 342.233 kb on - strand, within GFF349at 342.247 kb on + strand, within GFF349at 342.255 kb on + strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.255 kb on - strand, within GFF349at 342.269 kb on + strand, within GFF349at 342.301 kb on - strand, within GFF349at 342.329 kb on - strand, within GFF349at 342.338 kb on + strand, within GFF349at 342.342 kb on + strand, within GFF349at 342.376 kb on - strand, within GFF349at 342.421 kb on + strand, within GFF349at 342.421 kb on + strand, within GFF349at 342.429 kb on - strand, within GFF349at 342.429 kb on - strand, within GFF349at 342.429 kb on - strand, within GFF349at 342.429 kb on - strand, within GFF349at 342.438 kb on + strand, within GFF349at 342.540 kb on - strand, within GFF349at 342.629 kb on - strandat 342.629 kb on - strandat 342.681 kb on - strandat 342.714 kb on + strandat 342.722 kb on - strandat 342.722 kb on - strandat 342.769 kb on + strandat 342.774 kb on + strandat 342.777 kb on - strandat 342.777 kb on - strandat 342.784 kb on + strandat 342.792 kb on - strandat 342.814 kb on + strandat 342.846 kb on - strandat 342.858 kb on - strandat 342.893 kb on + strandat 342.924 kb on + strandat 342.999 kb on + strand, within GFF350at 343.101 kb on - strand, within GFF350at 343.106 kb on - strand, within GFF350at 343.124 kb on - strand, within GFF350at 343.179 kb on + strand, within GFF350at 343.227 kb on - strand, within GFF350at 343.338 kb on - strand, within GFF350at 343.427 kb on + strand, within GFF350at 343.435 kb on - strand, within GFF350at 343.456 kb on + strand, within GFF350at 343.480 kb on - strand, within GFF350at 343.558 kb on - strand, within GFF350at 343.688 kb on - strand, within GFF350at 343.695 kb on + strand, within GFF350at 343.741 kb on + strand, within GFF350at 343.743 kb on - strand, within GFF350at 343.743 kb on - strand, within GFF350at 343.817 kb on + strand, within GFF350at 343.825 kb on - strand, within GFF350at 343.825 kb on - strand, within GFF350at 343.902 kb on + strand, within GFF350at 343.977 kb on + strand, within GFF350at 343.989 kb on - strand, within GFF350at 344.005 kb on - strand, within GFF350at 344.008 kb on + strandat 344.039 kb on + strandat 344.039 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.219 kb on + strand, within GFF351at 344.234 kb on + strand, within GFF351at 344.257 kb on - strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.296 kb on + strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.305 kb on + strand, within GFF351at 344.323 kb on - strand, within GFF351at 344.331 kb on - strand, within GFF351at 344.372 kb on + strand, within GFF351at 344.415 kb on + strand, within GFF351at 344.439 kb on + strand, within GFF351at 344.491 kb on - strand, within GFF351at 344.500 kb on - strand, within GFF351at 344.504 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.579 kb on - strandat 344.583 kb on + strandat 344.633 kb on + strandat 344.639 kb on + strandat 344.643 kb on + strandat 344.657 kb on + strand, within GFF352at 344.660 kb on - strand, within GFF352at 344.693 kb on + strand, within GFF352at 344.700 kb on + strand, within GFF352at 344.708 kb on - strand, within GFF352at 344.708 kb on - strand, within GFF352at 344.747 kb on + strand, within GFF352at 344.755 kb on - strand, within GFF352at 344.791 kb on + strand, within GFF352at 344.797 kb on - strand, within GFF352at 344.799 kb on - strand, within GFF352at 344.801 kb on + strand, within GFF352at 344.824 kb on + strand, within GFF352at 344.825 kb on + strand, within GFF352at 344.842 kb on + strand, within GFF352at 344.843 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.850 kb on - strand, within GFF352at 344.894 kb on + strand, within GFF352at 344.912 kb on - strand, within GFF352at 344.950 kb on - strand, within GFF352at 344.960 kb on - strand, within GFF352at 344.997 kb on + strand, within GFF352at 345.017 kb on + strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.035 kb on - strand, within GFF352at 345.045 kb on - strand, within GFF352at 345.052 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
341,852 + GFF349 0.47 -0.6
341,868 + GFF349 0.48 +0.8
341,919 + GFF349 0.51 -0.2
341,932 - GFF349 0.52 -0.5
341,958 + GFF349 0.53 +0.0
341,966 - GFF349 0.54 +0.3
342,014 + GFF349 0.57 +0.3
342,167 + GFF349 0.66 -0.7
342,199 - GFF349 0.68 +0.3
342,204 - GFF349 0.68 +0.3
342,233 - GFF349 0.70 -0.2
342,247 + GFF349 0.71 -0.7
342,255 + GFF349 0.71 -0.7
342,255 - GFF349 0.71 +0.1
342,255 - GFF349 0.71 +1.2
342,255 - GFF349 0.71 -0.2
342,255 - GFF349 0.71 -0.5
342,269 + GFF349 0.72 +1.6
342,301 - GFF349 0.74 +0.3
342,329 - GFF349 0.76 -0.2
342,338 + GFF349 0.76 -0.7
342,342 + GFF349 0.76 -2.2
342,376 - GFF349 0.78 +0.8
342,421 + GFF349 0.81 -1.7
342,421 + GFF349 0.81 +0.9
342,429 - GFF349 0.82 +0.5
342,429 - GFF349 0.82 +0.8
342,429 - GFF349 0.82 +1.3
342,429 - GFF349 0.82 +0.2
342,438 + GFF349 0.82 -1.6
342,540 - GFF349 0.88 -1.6
342,629 - -0.7
342,629 - -1.1
342,681 - -1.7
342,714 + -0.2
342,722 - +1.9
342,722 - +1.9
342,769 + -0.2
342,774 + +0.4
342,777 - +0.4
342,777 - -0.1
342,784 + -0.1
342,792 - -1.1
342,814 + -0.8
342,846 - +0.3
342,858 - -0.7
342,893 + +1.1
342,924 + +0.0
342,999 + GFF350 0.12 +1.0
343,101 - GFF350 0.20 -1.0
343,106 - GFF350 0.21 -0.5
343,124 - GFF350 0.22 +0.0
343,179 + GFF350 0.26 -1.0
343,227 - GFF350 0.30 -1.1
343,338 - GFF350 0.38 +0.0
343,427 + GFF350 0.45 -1.1
343,435 - GFF350 0.46 -1.6
343,456 + GFF350 0.48 +0.8
343,480 - GFF350 0.49 -1.4
343,558 - GFF350 0.55 -0.8
343,688 - GFF350 0.65 +0.2
343,695 + GFF350 0.66 -1.5
343,741 + GFF350 0.70 +0.3
343,743 - GFF350 0.70 +1.0
343,743 - GFF350 0.70 -2.8
343,817 + GFF350 0.75 -0.2
343,825 - GFF350 0.76 +0.9
343,825 - GFF350 0.76 -0.9
343,902 + GFF350 0.82 -0.7
343,977 + GFF350 0.88 -1.8
343,989 - GFF350 0.89 +0.8
344,005 - GFF350 0.90 -1.9
344,008 + +1.0
344,039 + +1.6
344,039 + -0.1
344,135 + -0.3
344,135 + -2.1
344,135 + +0.7
344,135 + -1.0
344,135 + -0.7
344,135 + -1.4
344,143 - +0.9
344,143 - -0.5
344,143 - +0.8
344,143 - +0.5
344,143 - +0.2
344,143 - -0.1
344,143 - -0.6
344,143 - +0.1
344,143 - +0.2
344,219 + GFF351 0.19 -0.2
344,234 + GFF351 0.22 +0.9
344,257 - GFF351 0.27 -0.1
344,291 + GFF351 0.35 +0.2
344,291 + GFF351 0.35 -1.3
344,291 + GFF351 0.35 -0.3
344,291 + GFF351 0.35 +0.5
344,291 + GFF351 0.35 +0.5
344,291 + GFF351 0.35 +0.1
344,291 + GFF351 0.35 +0.2
344,296 + GFF351 0.36 +3.0
344,299 - GFF351 0.37 -0.7
344,299 - GFF351 0.37 +1.1
344,299 - GFF351 0.37 +0.8
344,299 - GFF351 0.37 -0.6
344,299 - GFF351 0.37 -0.5
344,299 - GFF351 0.37 +1.2
344,299 - GFF351 0.37 +0.3
344,305 + GFF351 0.38 -1.9
344,323 - GFF351 0.42 -0.6
344,331 - GFF351 0.44 +0.6
344,372 + GFF351 0.53 +0.6
344,415 + GFF351 0.63 -1.3
344,439 + GFF351 0.68 -1.1
344,491 - GFF351 0.80 -1.0
344,500 - GFF351 0.82 +0.3
344,504 - GFF351 0.83 +0.7
344,524 - GFF351 0.88 +0.8
344,524 - GFF351 0.88 -0.2
344,524 - GFF351 0.88 -0.1
344,579 - -0.9
344,583 + +0.3
344,633 + +0.4
344,639 + -0.8
344,643 + -0.6
344,657 + GFF352 0.11 -1.0
344,660 - GFF352 0.11 -0.4
344,693 + GFF352 0.17 -0.6
344,700 + GFF352 0.18 -0.1
344,708 - GFF352 0.19 -0.3
344,708 - GFF352 0.19 +0.1
344,747 + GFF352 0.25 -0.1
344,755 - GFF352 0.26 +1.5
344,791 + GFF352 0.32 +0.3
344,797 - GFF352 0.33 +0.4
344,799 - GFF352 0.33 +0.9
344,801 + GFF352 0.34 +0.6
344,824 + GFF352 0.37 +0.7
344,825 + GFF352 0.37 +0.4
344,842 + GFF352 0.40 -1.8
344,843 + GFF352 0.40 -0.7
344,849 + GFF352 0.41 -0.1
344,849 + GFF352 0.41 -1.7
344,849 + GFF352 0.41 -0.8
344,850 - GFF352 0.41 +0.5
344,894 + GFF352 0.48 -0.6
344,912 - GFF352 0.51 +1.1
344,950 - GFF352 0.57 -0.6
344,960 - GFF352 0.59 -1.4
344,997 + GFF352 0.64 +0.2
345,017 + GFF352 0.68 +0.0
345,025 - GFF352 0.69 +0.2
345,025 - GFF352 0.69 -0.7
345,025 - GFF352 0.69 +0.0
345,030 - GFF352 0.70 -0.3
345,030 - GFF352 0.70 -1.6
345,030 - GFF352 0.70 -0.2
345,035 - GFF352 0.70 +1.7
345,045 - GFF352 0.72 -0.9
345,052 - GFF352 0.73 +0.2
345,107 - GFF352 0.82 +0.3
345,107 - GFF352 0.82 +1.4
345,107 - GFF352 0.82 -0.9

Or see this region's nucleotide sequence