Strain Fitness in Sphingobium sp. HT1-2 around GFF3486

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,522,383	-		GFF3484	0.36	+1.1
3,522,388	+		GFF3484	0.37	+0.2
3,522,390	-		GFF3484	0.37	-1.4
3,522,399	+		GFF3484	0.38	-1.9
3,522,413	-		GFF3484	0.40	+1.3
3,522,445	+		GFF3484	0.44	-0.1
3,522,450	+		GFF3484	0.45	-0.3
3,522,453	-		GFF3484	0.45	-1.9
3,522,453	-		GFF3484	0.45	+1.1
3,522,453	-		GFF3484	0.45	-1.1
3,522,455	+		GFF3484	0.45	+0.3
3,522,455	+		GFF3484	0.45	+1.0
3,522,455	+		GFF3484	0.45	+0.7
3,522,455	+		GFF3484	0.45	-0.1
3,522,463	-		GFF3484	0.46	+1.3
3,522,463	-		GFF3484	0.46	-0.1
3,522,463	-		GFF3484	0.46	-2.9
3,522,475	+		GFF3484	0.48	-0.3
3,522,485	-		GFF3484	0.49	+1.1
3,522,490	-		GFF3484	0.50	+0.4
3,522,497	+		GFF3484	0.51	-0.0
3,522,497	+		GFF3484	0.51	+0.2
3,522,497	+		GFF3484	0.51	+1.3
3,522,497	+		GFF3484	0.51	-1.1
3,522,497	+		GFF3484	0.51	+1.6
3,522,497	+		GFF3484	0.51	-0.4
3,522,497	+		GFF3484	0.51	-0.0
3,522,497	+		GFF3484	0.51	-1.4
3,522,497	+		GFF3484	0.51	-1.8
3,522,505	-		GFF3484	0.52	+0.1
3,522,505	-		GFF3484	0.52	-0.1
3,522,505	-		GFF3484	0.52	-0.5
3,522,505	-		GFF3484	0.52	+0.4
3,522,507	+		GFF3484	0.52	-0.4
3,522,530	-		GFF3484	0.55	-0.2
3,522,534	+		GFF3484	0.55	-0.6
3,522,542	-		GFF3484	0.56	-0.1
3,522,562	+		GFF3484	0.59	+0.8
3,522,577	+		GFF3484	0.61	-0.5
3,522,589	+		GFF3484	0.62	+1.1
3,522,589	+		GFF3484	0.62	-0.3
3,522,589	+		GFF3484	0.62	-2.4
3,522,592	-		GFF3484	0.63	-3.5
3,522,635	-		GFF3484	0.68	+0.6
3,522,648	-		GFF3484	0.70	+0.9
3,522,669	+		GFF3484	0.72	+0.7
3,522,669	+		GFF3484	0.72	-0.4
3,522,669	+		GFF3484	0.72	-0.2
3,522,670	+		GFF3484	0.73	+0.4
3,522,704	+		GFF3484	0.77	+0.3
3,522,704	+		GFF3484	0.77	-2.1
3,522,728	+		GFF3484	0.80	+0.6
3,522,728	+		GFF3484	0.80	-0.4
3,522,728	+		GFF3484	0.80	-1.7
3,522,728	+		GFF3484	0.80	+0.8
3,522,728	+		GFF3484	0.80	-0.3
3,522,733	-		GFF3484	0.81	-0.3
3,522,736	-		GFF3484	0.81	-0.2
3,522,736	-		GFF3484	0.81	-0.5
3,522,736	-		GFF3484	0.81	-0.4
3,522,738	+		GFF3484	0.81	-0.6
3,522,743	+		GFF3484	0.82	-0.6
3,522,751	-		GFF3484	0.83	+1.1
3,522,766	+		GFF3484	0.85	-0.1
3,522,771	+		GFF3484	0.85	-1.6
3,522,779	-		GFF3484	0.86	+0.5
3,522,779	-		GFF3484	0.86	+0.2
3,522,779	-		GFF3484	0.86	-0.6
3,522,783	+		GFF3484	0.87	+1.1
3,522,783	+		GFF3484	0.87	-1.8
3,522,783	+		GFF3484	0.87	+1.0
3,522,783	+		GFF3484	0.87	-0.2
3,522,791	-		GFF3484	0.88	-1.0
3,522,791	-		GFF3484	0.88	-0.1
3,522,820	+				+1.5
3,522,828	-				+0.1
3,522,829	+				-0.3
3,522,829	+				-0.4
3,522,834	+				-1.8
3,522,842	-				+0.7
3,522,843	-				-1.4
3,522,848	-				-1.1
3,522,916	+				+0.2
3,522,926	+				-1.9
3,522,926	+				+0.9
3,522,926	+				-0.1
3,522,934	-				-2.5
3,522,935	-				+1.2
3,522,960	+				-0.8
3,522,994	+				-1.7
3,523,002	-				-0.3
3,523,002	-				-0.6
3,523,006	+				-1.3
3,523,006	+				+0.7
3,523,006	+				+1.1
3,523,012	-				+0.4
3,523,014	-				+0.0
3,523,014	-				-1.7
3,523,018	+				+0.9
3,523,042	+				+0.1
3,523,050	-				-1.3
3,523,050	-				+0.4
3,523,050	-				-0.3
3,523,058	+				+0.5
3,523,099	+				+1.3
3,523,099	+				-0.2
3,523,099	+				-0.3
3,523,099	+				+0.3
3,523,099	+				+1.4
3,523,099	+				-1.3
3,523,099	+				+0.2
3,523,099	+				-0.1
3,523,099	+				-0.9
3,523,102	-				-0.6
3,523,107	-				-0.4
3,523,107	-				-1.3
3,523,107	-				+0.6
3,523,107	-				-1.9
3,523,107	-				+0.1
3,523,107	-				+0.0
3,523,107	-				-0.1
3,523,107	-				-0.0
3,523,107	-				+0.7
3,523,107	-				-1.2
3,523,107	-				+1.0
3,523,107	-				-0.3
3,523,164	+				+0.3
3,523,164	+				-1.3
3,523,164	+				-0.1
3,523,164	+				+0.2
3,523,170	+				-0.5
3,523,172	-				+0.1
3,523,172	-				-0.1
3,523,179	-				-0.1
3,523,183	-				-2.0
3,523,185	-				-1.4
3,523,206	-				-0.4
3,523,264	+		GFF3485	0.80	+0.4
3,523,264	+		GFF3485	0.80	+1.8
3,523,264	+		GFF3485	0.80	-0.5
3,523,289	+				-2.1
3,523,297	-				-0.8
3,523,343	+				-1.3
3,523,349	+				-0.0
3,523,356	+				+1.4
3,523,357	-				-0.9
3,523,364	-				-0.9
3,523,364	-				-0.6
3,523,404	-		GFF3486	0.11	-0.9
3,523,422	+		GFF3486	0.15	+0.5
3,523,422	+		GFF3486	0.15	+0.1
3,523,440	-		GFF3486	0.19	+1.1
3,523,440	-		GFF3486	0.19	-1.3
3,523,457	+		GFF3486	0.23	+0.1
3,523,461	-		GFF3486	0.23	+0.1
3,523,467	+		GFF3486	0.25	-1.2
3,523,475	-		GFF3486	0.26	+0.8
3,523,578	-		GFF3486	0.48	+0.2
3,523,612	-		GFF3486	0.55	-2.3
3,523,668	-		GFF3486	0.67	+0.3
3,523,684	-		GFF3486	0.71	+0.4
3,523,692	+		GFF3486	0.72	-0.7
3,523,703	+		GFF3486	0.75	+0.2
3,523,703	+		GFF3486	0.75	-2.5
3,523,703	+		GFF3486	0.75	-0.3
3,523,711	-		GFF3486	0.76	-1.6
3,523,711	-		GFF3486	0.76	-1.2
3,523,711	-		GFF3486	0.76	+1.1
3,523,711	-		GFF3486	0.76	+0.4
3,523,711	-		GFF3486	0.76	+0.3
3,523,738	+		GFF3486	0.82	-0.9
3,523,738	+		GFF3486	0.82	+0.6
3,523,738	+		GFF3486	0.82	-0.2
3,523,738	+		GFF3486	0.82	-0.7
3,523,746	-		GFF3486	0.84	-0.8
3,523,762	-		GFF3486	0.87	-1.1
3,523,767	+		GFF3486	0.88	+0.1
3,523,770	+		GFF3486	0.89	-1.5
3,523,770	-		GFF3486	0.89	+0.5
3,523,773	-		GFF3486	0.90	-0.4
3,523,778	-				-1.2
3,523,778	-				+0.5
3,523,779	+				-1.2
3,523,780	+				+0.5
3,523,780	+				-1.3
3,523,780	+				-0.3
3,523,780	+				+0.1
3,523,780	+				+0.2
3,523,786	+				-1.6
3,523,786	+				-0.3
3,523,788	-				-1.0
3,523,788	-				-1.1
3,523,788	-				-2.2
3,523,788	-				+0.1
3,523,788	-				-0.9
3,523,788	-				+0.5
3,523,788	-				-1.6
3,523,788	-				-0.9
3,523,788	-				-1.2
3,523,788	-				-0.7
3,523,788	-				-1.9
3,523,788	-				-1.5
3,523,788	-				-1.4
3,523,788	-				+0.3
3,523,788	-				+0.9
3,523,790	-				-1.2
3,523,795	-				-0.2
3,523,806	+				+0.0
3,523,814	-				+0.4
3,523,814	-				+0.4
3,523,828	-				+0.3
3,523,836	-				+0.9
3,523,836	-				+0.6
3,523,863	+				+0.1
3,523,863	+				-2.6
3,523,907	+		GFF3487	0.14	-0.3
3,523,938	-		GFF3487	0.19	-0.8
3,523,938	-		GFF3487	0.19	-0.4
3,523,940	+		GFF3487	0.19	+0.1
3,523,942	+		GFF3487	0.19	-0.6
3,523,942	+		GFF3487	0.19	+0.3
3,523,942	+		GFF3487	0.19	-1.7
3,523,942	+		GFF3487	0.19	+0.7
3,523,948	-		GFF3487	0.20	-0.2
3,523,949	+		GFF3487	0.20	-1.9
3,523,949	+		GFF3487	0.20	+1.0
3,523,950	-		GFF3487	0.20	-0.7
3,523,950	-		GFF3487	0.20	-0.3
3,523,950	-		GFF3487	0.20	-0.2
3,523,950	-		GFF3487	0.20	-1.7
3,523,950	-		GFF3487	0.20	-0.3
3,523,973	+		GFF3487	0.24	-0.6
3,523,973	-		GFF3487	0.24	-0.1
3,523,989	+		GFF3487	0.27	-0.9
3,523,993	-		GFF3487	0.27	+0.3
3,524,011	+		GFF3487	0.30	+0.1
3,524,011	+		GFF3487	0.30	+0.5
3,524,019	-		GFF3487	0.31	-0.7
3,524,019	-		GFF3487	0.31	+0.2
3,524,019	-		GFF3487	0.31	-0.3
3,524,038	-		GFF3487	0.34	-0.5
3,524,042	+		GFF3487	0.35	-0.2
3,524,050	-		GFF3487	0.36	-0.9
3,524,107	+		GFF3487	0.45	-0.3
3,524,113	-		GFF3487	0.46	-1.3
3,524,120	+		GFF3487	0.47	-2.0
3,524,125	+		GFF3487	0.48	-0.7
3,524,128	-		GFF3487	0.49	-1.4
3,524,130	+		GFF3487	0.49	-0.2
3,524,138	-		GFF3487	0.50	-0.4
3,524,139	-		GFF3487	0.50	-3.1
3,524,174	-		GFF3487	0.56	-0.3
3,524,204	-		GFF3487	0.61	+0.0
3,524,204	-		GFF3487	0.61	+0.1
3,524,210	+		GFF3487	0.62	-1.4
3,524,219	+		GFF3487	0.63	+0.6
3,524,227	-		GFF3487	0.64	-1.8
3,524,227	-		GFF3487	0.64	+0.1
3,524,227	-		GFF3487	0.64	+0.1
3,524,230	-		GFF3487	0.65	-0.9
3,524,247	+		GFF3487	0.68	-1.2
3,524,249	+		GFF3487	0.68	+0.4
3,524,249	+		GFF3487	0.68	-0.3
3,524,250	-		GFF3487	0.68	-0.0
3,524,257	-		GFF3487	0.69	+0.9
3,524,257	-		GFF3487	0.69	-1.6
3,524,267	-		GFF3487	0.71	-2.1
3,524,269	+		GFF3487	0.71	-0.7
3,524,270	+		GFF3487	0.71	-1.7
3,524,279	-		GFF3487	0.73	-0.1
3,524,289	-		GFF3487	0.74	+0.7
3,524,298	+		GFF3487	0.76	+0.2
3,524,308	+		GFF3487	0.77	-0.9
3,524,313	+		GFF3487	0.78	-1.1
3,524,316	-		GFF3487	0.79	-0.4
3,524,321	-		GFF3487	0.79	+0.3
3,524,347	-		GFF3487	0.83	-1.0
3,524,378	+		GFF3487	0.88	+1.1
3,524,383	+		GFF3487	0.89	-0.3
3,524,383	+		GFF3487	0.89	-2.5
3,524,383	+		GFF3487	0.89	-1.9
3,524,383	+		GFF3487	0.89	-0.3
3,524,383	+		GFF3487	0.89	-0.6
3,524,391	-				-0.8
3,524,391	-				+0.1
3,524,391	-				-0.6
3,524,397	-				-0.5
3,524,397	-				+0.6
3,524,397	-				+0.0
3,524,397	-				-0.5
3,524,425	+				-1.2
3,524,440	+				-1.1
3,524,440	+				+0.3
3,524,440	+				-0.8
3,524,440	+				+2.1
3,524,440	+				-0.1
3,524,445	+				-1.7
3,524,445	+				-1.4
3,524,448	-				-0.2
3,524,451	+				+0.7
3,524,459	-				-0.7
3,524,459	-				-1.1
3,524,460	+				+0.7
3,524,460	+				-0.1
3,524,460	+				-0.2
3,524,464	-				-0.7
3,524,465	+				+0.4
3,524,482	+				+0.1
3,524,487	+				-0.4
3,524,490	-				+0.6
3,524,510	+				-2.3
3,524,510	+				-0.2
3,524,518	-				+0.2
3,524,526	-				+0.7
3,524,561	+				-1.8
3,524,569	-				+0.6
3,524,607	-				+0.2
3,524,618	+		GFF3488	0.11	+0.2
3,524,626	-		GFF3488	0.12	-0.4
3,524,628	+		GFF3488	0.12	-0.5
3,524,628	+		GFF3488	0.12	-0.7
3,524,633	+		GFF3488	0.12	-0.0
3,524,633	+		GFF3488	0.12	+0.8
3,524,636	-		GFF3488	0.13	-1.4
3,524,636	-		GFF3488	0.13	+0.1
3,524,636	-		GFF3488	0.13	+0.0
3,524,636	-		GFF3488	0.13	+0.3
3,524,636	-		GFF3488	0.13	-0.7
3,524,636	-		GFF3488	0.13	+0.6
3,524,636	-		GFF3488	0.13	-2.1
3,524,636	-		GFF3488	0.13	-0.5
3,524,641	-		GFF3488	0.13	-1.7
3,524,641	-		GFF3488	0.13	+0.9
3,524,641	-		GFF3488	0.13	+0.3
3,524,655	+		GFF3488	0.15	-0.1
3,524,660	+		GFF3488	0.15	-0.6
3,524,665	+		GFF3488	0.16	-1.3
3,524,673	-		GFF3488	0.17	-0.9
3,524,724	-		GFF3488	0.22	-0.4
3,524,730	-		GFF3488	0.22	-0.3
3,524,748	+		GFF3488	0.24	+0.5
3,524,767	+		GFF3488	0.26	+0.6
3,524,770	-		GFF3488	0.27	+0.4
3,524,770	-		GFF3488	0.27	-1.1
3,524,780	-		GFF3488	0.28	-0.7
3,524,789	-		GFF3488	0.28	-1.3
3,524,789	-		GFF3488	0.28	-0.7
3,524,813	+		GFF3488	0.31	+0.0
3,524,813	+		GFF3488	0.31	-0.7
3,524,813	+		GFF3488	0.31	-2.0
3,524,814	-		GFF3488	0.31	-0.6
3,524,815	-		GFF3488	0.31	-1.7
3,524,815	-		GFF3488	0.31	+0.3
3,524,818	+		GFF3488	0.31	-0.6
3,524,818	+		GFF3488	0.31	-0.0
3,524,818	+		GFF3488	0.31	-0.1
3,524,821	-		GFF3488	0.32	+0.1
3,524,821	-		GFF3488	0.32	+1.4
3,524,821	-		GFF3488	0.32	+1.7