Strain Fitness in Sphingobium sp. HT1-2 around GFF3455

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,494,891	-		GFF3454	0.14	-0.1
3,494,891	-		GFF3454	0.14	-0.9
3,494,898	+		GFF3454	0.16	+1.2
3,494,955	-		GFF3454	0.30	-1.2
3,494,959	+		GFF3454	0.31	-0.3
3,494,967	-		GFF3454	0.33	+0.6
3,494,978	-		GFF3454	0.36	-0.6
3,494,978	-		GFF3454	0.36	-0.8
3,494,979	-		GFF3454	0.36	-2.3
3,494,979	-		GFF3454	0.36	+0.1
3,495,018	-		GFF3454	0.46	+0.3
3,495,059	-		GFF3454	0.56	-2.5
3,495,064	-		GFF3454	0.57	+0.5
3,495,071	+		GFF3454	0.59	-1.6
3,495,081	-		GFF3454	0.61	+0.5
3,495,081	-		GFF3454	0.61	+0.5
3,495,122	-		GFF3454	0.72	+0.6
3,495,122	-		GFF3454	0.72	-1.0
3,495,125	+		GFF3454	0.72	-0.9
3,495,125	+		GFF3454	0.72	+0.3
3,495,125	+		GFF3454	0.72	-1.1
3,495,133	-		GFF3454	0.74	-2.5
3,495,133	-		GFF3454	0.74	+0.5
3,495,134	-		GFF3454	0.75	-1.4
3,495,145	+		GFF3454	0.77	+0.8
3,495,145	+		GFF3454	0.77	+0.1
3,495,145	+		GFF3454	0.77	+0.0
3,495,157	-		GFF3454	0.80	+0.5
3,495,204	-				+0.2
3,495,290	+				-1.9
3,495,331	-				-2.1
3,495,331	-				-1.6
3,495,361	-				-2.5
3,495,418	-		GFF3455	0.12	-1.8
3,495,420	+		GFF3455	0.13	-1.1
3,495,457	+		GFF3455	0.16	-1.6
3,495,483	-		GFF3455	0.18	-1.1
3,495,488	-		GFF3455	0.18	-1.8
3,495,541	+		GFF3455	0.23	-1.8
3,495,550	-		GFF3455	0.23	-2.1
3,495,577	+		GFF3455	0.26	-2.9
3,495,590	-		GFF3455	0.27	-1.9
3,495,600	-		GFF3455	0.28	-4.2
3,495,616	+		GFF3455	0.29	-2.8
3,495,629	+		GFF3455	0.30	-0.8
3,495,671	+		GFF3455	0.33	-0.3
3,495,671	+		GFF3455	0.33	-2.3
3,495,671	+		GFF3455	0.33	-1.9
3,495,671	+		GFF3455	0.33	-0.9
3,495,679	-		GFF3455	0.34	-1.9
3,495,679	-		GFF3455	0.34	+0.0
3,495,679	-		GFF3455	0.34	-0.9
3,495,679	-		GFF3455	0.34	-2.8
3,495,679	-		GFF3455	0.34	-1.5
3,495,680	+		GFF3455	0.34	-2.5
3,495,690	+		GFF3455	0.35	-2.2
3,495,695	+		GFF3455	0.35	-1.6
3,495,698	-		GFF3455	0.36	-2.7
3,495,698	-		GFF3455	0.36	-1.8
3,495,733	+		GFF3455	0.39	-1.5
3,495,733	+		GFF3455	0.39	+0.2
3,495,733	+		GFF3455	0.39	-2.9
3,495,733	+		GFF3455	0.39	-2.3
3,495,741	-		GFF3455	0.39	-1.6
3,495,741	-		GFF3455	0.39	-1.4
3,495,747	+		GFF3455	0.40	-1.6
3,495,768	-		GFF3455	0.41	-0.6
3,495,798	-		GFF3455	0.44	-2.0
3,495,798	-		GFF3455	0.44	-1.5
3,495,807	+		GFF3455	0.45	-3.3
3,495,856	-		GFF3455	0.49	-3.0
3,495,861	-		GFF3455	0.49	-1.4
3,495,891	-		GFF3455	0.52	-1.1
3,495,919	+		GFF3455	0.54	-2.1
3,495,935	-		GFF3455	0.55	-3.2
3,495,978	+		GFF3455	0.59	-0.3
3,496,006	+		GFF3455	0.61	-3.3
3,496,006	+		GFF3455	0.61	-3.6
3,496,009	-		GFF3455	0.61	-2.3
3,496,009	-		GFF3455	0.61	-1.6
3,496,014	-		GFF3455	0.62	-2.1
3,496,014	-		GFF3455	0.62	+0.5
3,496,042	-		GFF3455	0.64	-3.1
3,496,055	-		GFF3455	0.65	-1.7
3,496,119	-		GFF3455	0.70	-1.3
3,496,123	+		GFF3455	0.71	-2.8
3,496,158	-		GFF3455	0.74	-3.4
3,496,164	+		GFF3455	0.74	-2.3
3,496,169	+		GFF3455	0.75	-3.0
3,496,169	+		GFF3455	0.75	-1.9
3,496,214	+		GFF3455	0.78	-1.4
3,496,222	+		GFF3455	0.79	-2.1
3,496,222	+		GFF3455	0.79	-2.3
3,496,222	+		GFF3455	0.79	-2.7
3,496,222	+		GFF3455	0.79	-2.3
3,496,230	-		GFF3455	0.80	-3.0
3,496,230	-		GFF3455	0.80	-0.6
3,496,230	-		GFF3455	0.80	-1.5
3,496,234	+		GFF3455	0.80	-1.9
3,496,242	-		GFF3455	0.81	-1.7
3,496,284	+		GFF3455	0.84	-1.1
3,496,285	-		GFF3455	0.84	-3.0
3,496,290	+		GFF3455	0.85	-2.8
3,496,293	-		GFF3455	0.85	-1.9
3,496,293	-		GFF3455	0.85	-2.2
3,496,298	-		GFF3455	0.85	-2.5
3,496,348	+		GFF3455	0.89	-0.6
3,496,348	+		GFF3455	0.89	-0.9
3,496,359	+				-3.0
3,496,359	+				-0.6
3,496,367	-				-2.6
3,496,367	-				-0.8
3,496,394	+				-2.7
3,496,451	-				-1.7
3,496,507	+				-2.7
3,496,518	+				-1.1
3,496,518	+				-0.1
3,496,518	+				+0.7
3,496,589	+		GFF3456	0.12	-0.3
3,496,589	+		GFF3456	0.12	-0.4
3,496,602	+		GFF3456	0.13	-0.3
3,496,648	+		GFF3456	0.18	-2.6
3,496,648	+		GFF3456	0.18	-0.1
3,496,648	+		GFF3456	0.18	+0.1
3,496,648	+		GFF3456	0.18	-1.9
3,496,648	+		GFF3456	0.18	-1.4
3,496,656	-		GFF3456	0.18	-0.8
3,496,656	-		GFF3456	0.18	-0.3
3,496,656	-		GFF3456	0.18	+0.9
3,496,707	-		GFF3456	0.24	+0.6
3,496,729	+		GFF3456	0.26	+1.7
3,496,729	+		GFF3456	0.26	+1.2
3,496,729	+		GFF3456	0.26	-0.6
3,496,729	+		GFF3456	0.26	-1.1
3,496,737	-		GFF3456	0.27	-0.3
3,496,756	-		GFF3456	0.28	-0.5
3,496,757	-		GFF3456	0.29	-0.3
3,496,757	-		GFF3456	0.29	-0.4
3,496,761	-		GFF3456	0.29	-0.2
3,496,761	-		GFF3456	0.29	-0.5
3,496,787	+		GFF3456	0.32	+1.4
3,496,787	+		GFF3456	0.32	-0.7
3,496,787	+		GFF3456	0.32	+0.2
3,496,787	+		GFF3456	0.32	-0.9
3,496,787	+		GFF3456	0.32	+0.0
3,496,787	+		GFF3456	0.32	+1.7
3,496,787	+		GFF3456	0.32	-0.7
3,496,787	+		GFF3456	0.32	+0.2
3,496,787	+		GFF3456	0.32	-0.1
3,496,787	+		GFF3456	0.32	-0.8
3,496,794	-		GFF3456	0.32	+0.1
3,496,795	-		GFF3456	0.32	-0.1
3,496,795	-		GFF3456	0.32	-0.2
3,496,811	+		GFF3456	0.34	+1.5
3,496,813	-		GFF3456	0.34	-0.4
3,496,813	-		GFF3456	0.34	-0.7
3,496,829	-		GFF3456	0.36	-0.3
3,496,851	-		GFF3456	0.38	-0.3
3,496,872	+		GFF3456	0.40	+1.1
3,496,872	+		GFF3456	0.40	-2.5
3,496,890	+		GFF3456	0.42	-0.1
3,496,891	+		GFF3456	0.42	-0.3
3,496,891	+		GFF3456	0.42	-0.2
3,496,891	+		GFF3456	0.42	-1.8
3,496,899	-		GFF3456	0.43	-0.1
3,496,916	+		GFF3456	0.44	-1.5
3,496,921	+		GFF3456	0.45	+0.9
3,496,921	+		GFF3456	0.45	+0.3
3,496,924	-		GFF3456	0.45	+0.9
3,496,929	-		GFF3456	0.46	+0.7
3,496,929	-		GFF3456	0.46	-1.4
3,496,929	-		GFF3456	0.46	-1.6
3,496,943	+		GFF3456	0.47	-1.7
3,496,945	+		GFF3456	0.47	-0.0
3,496,961	-		GFF3456	0.49	+1.1
3,496,971	+		GFF3456	0.50	-1.3
3,496,971	+		GFF3456	0.50	+1.2
3,496,971	+		GFF3456	0.50	-1.8
3,496,979	-		GFF3456	0.51	+0.9
3,496,981	+		GFF3456	0.51	-1.6
3,496,981	+		GFF3456	0.51	-0.1
3,496,989	-		GFF3456	0.52	+0.1
3,496,989	-		GFF3456	0.52	-0.1
3,496,989	-		GFF3456	0.52	-0.3
3,496,989	-		GFF3456	0.52	+0.3
3,496,989	-		GFF3456	0.52	+1.3
3,496,989	-		GFF3456	0.52	+0.7
3,496,989	-		GFF3456	0.52	-0.1
3,496,994	+		GFF3456	0.52	+0.2
3,496,994	+		GFF3456	0.52	-2.5
3,496,997	+		GFF3456	0.53	+0.3
3,497,000	-		GFF3456	0.53	+0.4
3,497,002	-		GFF3456	0.53	-0.4
3,497,012	-		GFF3456	0.54	+1.0
3,497,022	+		GFF3456	0.55	-2.3
3,497,022	-		GFF3456	0.55	+0.7
3,497,025	-		GFF3456	0.55	+0.4
3,497,042	-		GFF3456	0.57	-0.3
3,497,053	-		GFF3456	0.58	-0.7
3,497,070	+		GFF3456	0.60	-0.4
3,497,070	-		GFF3456	0.60	-0.2
3,497,087	+		GFF3456	0.62	-0.0
3,497,087	+		GFF3456	0.62	-0.5
3,497,095	-		GFF3456	0.62	-0.1
3,497,095	-		GFF3456	0.62	+1.0
3,497,119	+		GFF3456	0.65	-2.6
3,497,136	+		GFF3456	0.66	+0.2
3,497,139	+		GFF3456	0.67	-1.6
3,497,182	+		GFF3456	0.71	-0.3
3,497,246	+		GFF3456	0.77	+0.1
3,497,254	-		GFF3456	0.78	+1.5
3,497,254	-		GFF3456	0.78	-1.1
3,497,311	+		GFF3456	0.84	-0.3
3,497,311	+		GFF3456	0.84	+0.3
3,497,311	+		GFF3456	0.84	-2.0
3,497,311	+		GFF3456	0.84	-0.3
3,497,319	-		GFF3456	0.85	+0.2
3,497,319	-		GFF3456	0.85	-1.0
3,497,319	-		GFF3456	0.85	-1.5
3,497,319	-		GFF3456	0.85	+0.3
3,497,319	-		GFF3456	0.85	+1.2
3,497,319	-		GFF3456	0.85	-0.2
3,497,362	-		GFF3456	0.89	+0.7
3,497,450	+				+0.0
3,497,463	-				+0.8