Strain Fitness in Sphingobium sp. HT1-2 around GFF3449

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,487,341	-		GFF3447	0.83	-0.5
3,487,341	-		GFF3447	0.83	+1.6
3,487,341	-		GFF3447	0.83	-1.0
3,487,341	-		GFF3447	0.83	-0.8
3,487,341	-		GFF3447	0.83	+0.4
3,487,341	-		GFF3447	0.83	+0.3
3,487,359	+		GFF3447	0.85	+0.3
3,487,366	+		GFF3447	0.86	-1.9
3,487,367	+		GFF3447	0.86	+0.3
3,487,367	+		GFF3447	0.86	-1.5
3,487,367	+		GFF3447	0.86	-0.6
3,487,367	-		GFF3447	0.86	+1.0
3,487,396	-		GFF3447	0.90	+0.1
3,487,396	-		GFF3447	0.90	-1.2
3,487,429	-				-2.2
3,487,444	+				+1.4
3,487,444	+				-0.9
3,487,452	-				-1.9
3,487,465	+				+0.4
3,487,483	-				-1.4
3,487,516	+				-0.3
3,487,516	+				-0.6
3,487,534	-				-1.4
3,487,536	+				-1.1
3,487,536	+				-0.6
3,487,536	+				+0.6
3,487,544	-				-0.6
3,487,544	-				-0.2
3,487,544	-				-0.3
3,487,560	+				+0.1
3,487,570	+				-1.0
3,488,378	-				+0.5
3,488,378	-				+0.1
3,488,378	-				+0.2
3,488,390	+				+0.2
3,488,406	-				-1.1
3,488,446	+				-0.4
3,488,461	+		GFF3449	0.10	-2.4
3,488,469	+		GFF3449	0.11	-0.6
3,488,469	+		GFF3449	0.11	-0.0
3,488,469	+		GFF3449	0.11	-2.7
3,488,469	+		GFF3449	0.11	-0.3
3,488,477	-		GFF3449	0.12	-0.6
3,488,477	-		GFF3449	0.12	+1.8
3,488,477	-		GFF3449	0.12	+1.4
3,488,477	-		GFF3449	0.12	-0.7
3,488,481	+		GFF3449	0.12	+0.2
3,488,481	+		GFF3449	0.12	+0.6
3,488,489	-		GFF3449	0.13	+0.9
3,488,489	-		GFF3449	0.13	+0.0
3,488,511	+		GFF3449	0.15	-0.4
3,488,535	-		GFF3449	0.17	-0.9
3,488,551	+		GFF3449	0.18	-0.8
3,488,556	+		GFF3449	0.18	-0.8
3,488,583	+		GFF3449	0.21	-0.2
3,488,586	-		GFF3449	0.21	-0.7
3,488,591	-		GFF3449	0.21	-1.0
3,488,658	-		GFF3449	0.27	+0.0
3,488,670	+		GFF3449	0.28	+0.5
3,488,673	+		GFF3449	0.28	-0.5
3,488,673	+		GFF3449	0.28	-0.3
3,488,673	+		GFF3449	0.28	+0.5
3,488,673	+		GFF3449	0.28	+0.6
3,488,673	+		GFF3449	0.28	+1.5
3,488,673	+		GFF3449	0.28	-1.9
3,488,673	+		GFF3449	0.28	-1.6
3,488,674	+		GFF3449	0.28	+0.1
3,488,681	-		GFF3449	0.29	+0.4
3,488,681	-		GFF3449	0.29	-0.3
3,488,681	-		GFF3449	0.29	+1.1
3,488,716	+		GFF3449	0.32	-0.1
3,488,716	+		GFF3449	0.32	+0.3
3,488,716	+		GFF3449	0.32	+0.4
3,488,716	+		GFF3449	0.32	+0.6
3,488,716	+		GFF3449	0.32	+0.7
3,488,724	-		GFF3449	0.33	-0.7
3,488,724	-		GFF3449	0.33	-0.1
3,488,724	-		GFF3449	0.33	+0.1
3,488,728	-		GFF3449	0.33	-0.4
3,488,740	+		GFF3449	0.34	-0.2
3,488,775	-		GFF3449	0.37	-0.7
3,488,791	+		GFF3449	0.38	-0.3
3,488,791	+		GFF3449	0.38	-1.7
3,488,792	-		GFF3449	0.38	-0.1
3,488,793	+		GFF3449	0.39	-0.1
3,488,799	-		GFF3449	0.39	+0.3
3,488,800	+		GFF3449	0.39	-0.4
3,488,808	-		GFF3449	0.40	-0.1
3,488,808	-		GFF3449	0.40	-0.3
3,488,808	-		GFF3449	0.40	+0.1
3,488,808	-		GFF3449	0.40	-1.6
3,488,819	-		GFF3449	0.41	+0.0
3,488,847	+		GFF3449	0.43	-1.6
3,488,847	+		GFF3449	0.43	-0.5
3,488,847	+		GFF3449	0.43	+0.6
3,488,847	+		GFF3449	0.43	-0.4
3,488,847	+		GFF3449	0.43	-0.1
3,488,847	+		GFF3449	0.43	-2.1
3,488,847	+		GFF3449	0.43	-1.4
3,488,855	-		GFF3449	0.44	-0.1
3,488,855	-		GFF3449	0.44	+0.3
3,488,855	-		GFF3449	0.44	+0.6
3,488,855	-		GFF3449	0.44	-0.6
3,488,857	-		GFF3449	0.44	+0.8
3,488,865	-		GFF3449	0.45	-0.8
3,488,872	-		GFF3449	0.45	-2.1
3,488,874	-		GFF3449	0.45	+0.9
3,488,890	+		GFF3449	0.47	-0.7
3,488,890	+		GFF3449	0.47	-0.3
3,488,890	+		GFF3449	0.47	-0.9
3,488,890	+		GFF3449	0.47	-0.3
3,488,890	+		GFF3449	0.47	-0.3
3,488,898	-		GFF3449	0.47	-0.9
3,488,898	-		GFF3449	0.47	-0.3
3,488,898	-		GFF3449	0.47	-0.8
3,488,898	-		GFF3449	0.47	+1.1
3,488,945	-		GFF3449	0.51	+0.9
3,488,945	-		GFF3449	0.51	-0.2
3,488,946	+		GFF3449	0.51	+0.6
3,488,954	-		GFF3449	0.52	-0.7
3,488,969	-		GFF3449	0.53	-0.0
3,488,974	-		GFF3449	0.54	-0.3
3,488,985	+		GFF3449	0.55	+0.6
3,489,040	+		GFF3449	0.59	+0.6
3,489,040	+		GFF3449	0.59	-0.6
3,489,055	-		GFF3449	0.61	-0.7
3,489,055	-		GFF3449	0.61	-0.3
3,489,064	+		GFF3449	0.61	-1.4
3,489,064	+		GFF3449	0.61	-1.4
3,489,064	+		GFF3449	0.61	-2.3
3,489,064	+		GFF3449	0.61	-1.3
3,489,064	+		GFF3449	0.61	-2.1
3,489,064	+		GFF3449	0.61	+0.2
3,489,064	+		GFF3449	0.61	+0.9
3,489,067	-		GFF3449	0.62	-0.3
3,489,072	-		GFF3449	0.62	+0.3
3,489,072	-		GFF3449	0.62	-0.1
3,489,072	-		GFF3449	0.62	-0.4
3,489,072	-		GFF3449	0.62	+0.0
3,489,072	-		GFF3449	0.62	+1.3
3,489,072	-		GFF3449	0.62	-0.1
3,489,072	-		GFF3449	0.62	+0.3
3,489,084	-		GFF3449	0.63	+0.8
3,489,084	-		GFF3449	0.63	+0.2
3,489,084	-		GFF3449	0.63	-0.1
3,489,084	-		GFF3449	0.63	-1.3
3,489,098	+		GFF3449	0.64	-0.9
3,489,105	+		GFF3449	0.65	-1.0
3,489,109	-		GFF3449	0.65	-1.1
3,489,114	-		GFF3449	0.66	-0.0
3,489,146	+		GFF3449	0.68	-1.4
3,489,156	+		GFF3449	0.69	+1.0
3,489,194	-		GFF3449	0.73	-0.7
3,489,205	+		GFF3449	0.73	+1.4
3,489,205	+		GFF3449	0.73	+1.7
3,489,205	+		GFF3449	0.73	-1.1
3,489,205	+		GFF3449	0.73	-1.6
3,489,205	+		GFF3449	0.73	+0.6
3,489,205	+		GFF3449	0.73	-2.4
3,489,205	+		GFF3449	0.73	-0.5
3,489,205	+		GFF3449	0.73	+1.0
3,489,205	+		GFF3449	0.73	+0.3
3,489,205	+		GFF3449	0.73	-0.8
3,489,205	+		GFF3449	0.73	-1.4
3,489,205	+		GFF3449	0.73	-1.0
3,489,205	+		GFF3449	0.73	-1.3
3,489,205	+		GFF3449	0.73	+1.3
3,489,208	-		GFF3449	0.74	-0.5
3,489,213	-		GFF3449	0.74	+0.2
3,489,213	-		GFF3449	0.74	-0.2
3,489,213	-		GFF3449	0.74	-0.7
3,489,213	-		GFF3449	0.74	-0.8
3,489,213	-		GFF3449	0.74	-0.5
3,489,213	-		GFF3449	0.74	-2.1
3,489,213	-		GFF3449	0.74	+0.0
3,489,213	-		GFF3449	0.74	+0.1
3,489,213	-		GFF3449	0.74	-0.9
3,489,213	-		GFF3449	0.74	-1.6
3,489,213	-		GFF3449	0.74	+0.3
3,489,213	-		GFF3449	0.74	-1.7
3,489,213	-		GFF3449	0.74	+0.1
3,489,224	+		GFF3449	0.75	+0.7
3,489,238	+		GFF3449	0.76	-0.1
3,489,238	+		GFF3449	0.76	-0.9
3,489,238	+		GFF3449	0.76	-0.5
3,489,238	+		GFF3449	0.76	+0.3
3,489,243	+		GFF3449	0.77	-0.7
3,489,243	+		GFF3449	0.77	-0.1
3,489,243	+		GFF3449	0.77	+0.3
3,489,243	+		GFF3449	0.77	+0.1
3,489,246	-		GFF3449	0.77	-0.7
3,489,248	+		GFF3449	0.77	-0.6
3,489,251	-		GFF3449	0.77	-0.6
3,489,251	-		GFF3449	0.77	-0.8
3,489,251	-		GFF3449	0.77	-0.3
3,489,251	-		GFF3449	0.77	-0.6
3,489,251	-		GFF3449	0.77	+0.3
3,489,251	-		GFF3449	0.77	+1.1
3,489,256	-		GFF3449	0.78	-0.9
3,489,266	+		GFF3449	0.79	-0.9
3,489,291	+		GFF3449	0.81	-2.4
3,489,291	+		GFF3449	0.81	-1.2
3,489,299	-		GFF3449	0.81	-0.6
3,489,314	-		GFF3449	0.83	-1.6
3,489,315	-		GFF3449	0.83	-1.4
3,489,315	-		GFF3449	0.83	-0.4
3,489,317	+		GFF3449	0.83	-0.7
3,489,322	+		GFF3449	0.83	-0.7
3,489,342	-		GFF3449	0.85	-0.0
3,489,347	-		GFF3449	0.85	-2.2
3,489,354	-		GFF3449	0.86	+0.4
3,489,360	+		GFF3449	0.87	-1.9
3,489,365	+		GFF3449	0.87	+0.0
3,489,368	-		GFF3449	0.87	-0.3
3,489,373	-		GFF3449	0.88	-0.4
3,489,373	-		GFF3449	0.88	+0.0
3,489,373	-		GFF3449	0.88	-0.3
3,489,378	-		GFF3449	0.88	+1.7
3,489,392	-		GFF3449	0.89	+0.8
3,489,393	+		GFF3449	0.89	-0.4
3,489,399	+		GFF3449	0.90	-0.5
3,489,399	+		GFF3449	0.90	-0.3
3,489,402	-				-1.7
3,489,407	-				-0.1
3,489,407	-				-0.3
3,489,407	-				-0.8
3,489,414	-				-1.4
3,489,427	+				-0.4
3,489,427	+				-3.2
3,489,427	+				-1.3
3,489,427	+				+0.8
3,489,427	+				-1.0
3,489,427	+				+0.6
3,489,427	+				+0.7
3,489,427	+				-0.3
3,489,427	+				-1.6
3,489,427	+				+1.3
3,489,427	+				-0.1
3,489,427	+				-1.8
3,489,427	+				-0.8
3,489,427	+				-0.4
3,489,427	+				+0.0
3,489,427	+				+0.8
3,489,435	-				-0.2
3,489,435	-				-2.7
3,489,435	-				-1.0
3,489,435	-				-0.8
3,489,435	-				+0.3
3,489,435	-				+0.0
3,489,435	-				-0.3
3,489,435	-				-2.7
3,489,435	-				-0.7
3,489,435	-				+0.1
3,489,435	-				-0.2
3,489,435	-				-0.2
3,489,435	-				+0.7
3,489,435	-				+0.1
3,489,435	-				-1.4
3,489,435	-				+1.0
3,489,435	-				-0.4
3,489,435	-				-0.4
3,489,435	-				+0.1
3,489,435	-				+1.3
3,489,435	-				+0.8
3,489,437	-				-0.8
3,489,452	-				+0.2
3,489,454	+				+1.3
3,489,456	+				-0.6
3,489,477	-				-1.9
3,489,518	+				-0.1
3,489,526	-				+1.1
3,489,526	-				-0.4
3,489,526	-				+0.4
3,489,546	+				-1.6
3,489,553	+				+0.4
3,489,561	-				-0.2
3,489,561	-				-2.2
3,489,561	-				+0.4
3,489,561	-				+1.4
3,489,596	+				-0.7
3,489,604	-				-0.7
3,489,618	+				+0.6
3,489,618	+				-0.7
3,489,618	+				-1.6
3,489,626	-				+0.9
3,489,626	-				-1.7
3,489,626	-				+0.6
3,489,626	-				-0.5
3,489,626	-				-0.1
3,489,631	+				-0.3
3,489,697	-				-2.7
3,489,728	+		GFF3450	0.11	+0.8
3,489,734	-		GFF3450	0.12	+1.1
3,489,736	-		GFF3450	0.12	-0.3
3,489,742	+		GFF3450	0.13	+0.4
3,489,747	+		GFF3450	0.14	+0.4
3,489,747	+		GFF3450	0.14	-0.1
3,489,747	+		GFF3450	0.14	-2.9
3,489,747	+		GFF3450	0.14	+0.4
3,489,747	+		GFF3450	0.14	+0.7
3,489,747	+		GFF3450	0.14	+0.6
3,489,747	+		GFF3450	0.14	-1.0
3,489,747	+		GFF3450	0.14	+0.5
3,489,750	-		GFF3450	0.14	-1.8
3,489,750	-		GFF3450	0.14	-0.1
3,489,750	-		GFF3450	0.14	-0.7
3,489,752	+		GFF3450	0.14	-0.9
3,489,752	+		GFF3450	0.14	-1.3
3,489,752	+		GFF3450	0.14	-0.4
3,489,752	+		GFF3450	0.14	-1.1
3,489,755	-		GFF3450	0.14	+0.6
3,489,755	-		GFF3450	0.14	-1.6
3,489,755	-		GFF3450	0.14	-1.5
3,489,755	-		GFF3450	0.14	+1.4
3,489,755	-		GFF3450	0.14	-0.0
3,489,755	-		GFF3450	0.14	+0.3
3,489,755	-		GFF3450	0.14	-1.2
3,489,755	-		GFF3450	0.14	+0.7
3,489,755	-		GFF3450	0.14	+0.1
3,489,760	-		GFF3450	0.15	-1.8
3,489,760	-		GFF3450	0.15	-0.7
3,489,760	-		GFF3450	0.15	-1.0
3,489,760	-		GFF3450	0.15	-0.6
3,489,776	-		GFF3450	0.17	-1.2
3,489,779	+		GFF3450	0.17	-1.6
3,489,780	+		GFF3450	0.17	+2.3
3,489,788	-		GFF3450	0.18	+0.2
3,489,789	+		GFF3450	0.19	-1.0
3,489,797	-		GFF3450	0.19	-0.3
3,489,797	-		GFF3450	0.19	+0.1
3,489,797	-		GFF3450	0.19	-1.5
3,489,799	-		GFF3450	0.20	-1.1
3,489,824	+		GFF3450	0.23	+0.5
3,489,829	+		GFF3450	0.23	+1.0
3,489,842	-		GFF3450	0.25	-0.9
3,489,842	-		GFF3450	0.25	+0.0
3,489,849	+		GFF3450	0.26	+0.1
3,489,855	+		GFF3450	0.26	-1.1
3,489,856	+		GFF3450	0.26	-0.3
3,489,856	+		GFF3450	0.26	+1.3
3,489,856	+		GFF3450	0.26	-2.4
3,489,856	+		GFF3450	0.26	+0.3
3,489,856	+		GFF3450	0.26	+0.2
3,489,856	+		GFF3450	0.26	+0.2
3,489,856	+		GFF3450	0.26	-0.7
3,489,856	+		GFF3450	0.26	-1.4
3,489,856	+		GFF3450	0.26	+0.6
3,489,864	-		GFF3450	0.27	-0.3
3,489,864	-		GFF3450	0.27	+0.3
3,489,869	-		GFF3450	0.28	+0.9
3,489,869	-		GFF3450	0.28	+0.0
3,489,875	-		GFF3450	0.29	-1.0
3,489,875	-		GFF3450	0.29	-1.7
3,489,900	-		GFF3450	0.32	-0.8
3,489,935	+		GFF3450	0.36	+0.1
3,489,936	-		GFF3450	0.36	+1.4
3,489,939	+		GFF3450	0.36	-0.5
3,489,940	+		GFF3450	0.36	-0.5
3,489,940	+		GFF3450	0.36	-0.2
3,489,943	-		GFF3450	0.37	+0.1
3,489,944	+		GFF3450	0.37	-0.7
3,489,947	-		GFF3450	0.37	+0.1
3,489,948	-		GFF3450	0.37	+0.2
3,489,953	-		GFF3450	0.38	+0.5
3,489,960	+		GFF3450	0.39	-0.5
3,489,961	+		GFF3450	0.39	-1.9
3,489,966	+		GFF3450	0.40	-0.0
3,489,966	+		GFF3450	0.40	+1.0
3,489,966	+		GFF3450	0.40	-0.6
3,489,968	-		GFF3450	0.40	+0.7
3,489,974	-		GFF3450	0.40	+0.5
3,489,974	-		GFF3450	0.40	-0.4
3,489,988	+		GFF3450	0.42	+0.2
3,489,988	+		GFF3450	0.42	+0.2
3,489,993	+		GFF3450	0.43	+0.7
3,489,995	-		GFF3450	0.43	-0.6
3,489,996	-		GFF3450	0.43	-0.6
3,489,999	-		GFF3450	0.43	-0.9
3,489,999	-		GFF3450	0.43	-1.7
3,490,001	-		GFF3450	0.44	-0.7
3,490,001	-		GFF3450	0.44	+0.9
3,490,001	-		GFF3450	0.44	-0.8
3,490,040	+		GFF3450	0.48	-0.3
3,490,040	+		GFF3450	0.48	+0.6
3,490,040	+		GFF3450	0.48	-0.4
3,490,040	+		GFF3450	0.48	-0.6
3,490,048	-		GFF3450	0.49	-2.3
3,490,080	+		GFF3450	0.53	-0.2
3,490,086	+		GFF3450	0.54	+0.7
3,490,086	+		GFF3450	0.54	-0.7
3,490,087	+		GFF3450	0.54	-1.3
3,490,088	-		GFF3450	0.54	+0.6
3,490,092	+		GFF3450	0.54	+0.1
3,490,092	+		GFF3450	0.54	-1.4
3,490,093	+		GFF3450	0.55	-0.9
3,490,094	-		GFF3450	0.55	-1.0
3,490,094	-		GFF3450	0.55	+0.7
3,490,096	-		GFF3450	0.55	-0.3
3,490,100	-		GFF3450	0.55	+0.6
3,490,157	+		GFF3450	0.62	-0.0
3,490,162	+		GFF3450	0.63	+1.3
3,490,165	-		GFF3450	0.63	-2.4
3,490,179	-		GFF3450	0.65	-0.1
3,490,205	+		GFF3450	0.68	-0.3
3,490,225	+		GFF3450	0.70	-0.6
3,490,303	+		GFF3450	0.79	-0.3
3,490,311	-		GFF3450	0.80	-0.1
3,490,319	-		GFF3450	0.81	-0.2
3,490,344	+		GFF3450	0.84	-1.0
3,490,344	+		GFF3450	0.84	-0.6
3,490,351	-		GFF3450	0.85	-0.1
3,490,352	-		GFF3450	0.85	-0.5
3,490,367	+		GFF3450	0.87	-0.3
3,490,367	+		GFF3450	0.87	+0.6
3,490,367	+		GFF3450	0.87	-0.0
3,490,373	+		GFF3450	0.88	-1.3
3,490,381	+		GFF3450	0.89	-0.7
3,490,398	+				-1.1
3,490,404	-				+0.2
3,490,421	+				-2.6
3,490,421	+				+0.5
3,490,425	-				+1.3
3,490,425	-				-2.2
3,490,439	+				-0.7
3,490,447	-				-0.4
3,490,447	-				+1.2
3,490,447	-				-0.7
3,490,452	-				-0.4
3,490,481	+				-1.4
3,490,486	+				-0.3
3,490,494	-				-1.2
3,490,494	-				+1.0
3,490,500	+				+0.1
3,490,505	+				+1.1