Strain Fitness in Sphingobium sp. HT1-2 around GFF3445

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,484,213	-		GFF3444	0.29	-0.6
3,484,242	-		GFF3444	0.31	-0.3
3,484,245	+		GFF3444	0.31	-2.0
3,484,253	-		GFF3444	0.32	-0.2
3,484,255	+		GFF3444	0.32	-0.8
3,484,272	+		GFF3444	0.33	+0.2
3,484,280	-		GFF3444	0.34	+0.7
3,484,280	-		GFF3444	0.34	-0.2
3,484,280	-		GFF3444	0.34	+0.3
3,484,368	+		GFF3444	0.41	+0.2
3,484,474	+		GFF3444	0.49	+0.8
3,484,492	-		GFF3444	0.50	+0.6
3,484,494	+		GFF3444	0.50	+0.4
3,484,562	+		GFF3444	0.56	-1.6
3,484,562	+		GFF3444	0.56	+0.2
3,484,596	-		GFF3444	0.58	+1.2
3,484,641	-		GFF3444	0.62	-0.0
3,484,644	+		GFF3444	0.62	-0.8
3,484,652	-		GFF3444	0.62	+0.4
3,484,687	-		GFF3444	0.65	+0.7
3,484,763	-		GFF3444	0.71	+0.7
3,484,794	+		GFF3444	0.73	+1.2
3,484,799	+		GFF3444	0.74	-0.8
3,484,825	-		GFF3444	0.76	+0.5
3,484,836	+		GFF3444	0.77	-0.1
3,484,836	+		GFF3444	0.77	+0.1
3,484,836	+		GFF3444	0.77	-1.0
3,484,845	-		GFF3444	0.77	+0.0
3,484,859	+		GFF3444	0.78	-0.9
3,484,859	+		GFF3444	0.78	-0.8
3,484,867	-		GFF3444	0.79	+1.7
3,484,889	+		GFF3444	0.81	+0.9
3,484,892	-		GFF3444	0.81	+0.8
3,484,904	+		GFF3444	0.82	+0.5
3,484,911	+		GFF3444	0.82	+0.1
3,484,911	+		GFF3444	0.82	+1.4
3,484,914	-		GFF3444	0.83	+1.9
3,484,914	-		GFF3444	0.83	+0.8
3,484,919	-		GFF3444	0.83	+0.7
3,484,954	+		GFF3444	0.86	+0.4
3,484,954	+		GFF3444	0.86	+0.3
3,484,954	+		GFF3444	0.86	+0.9
3,484,954	+		GFF3444	0.86	+0.8
3,484,954	+		GFF3444	0.86	-0.7
3,484,954	+		GFF3444	0.86	-0.0
3,484,957	-		GFF3444	0.86	+0.1
3,484,958	-		GFF3444	0.86	-0.8
3,484,962	-		GFF3444	0.86	+0.4
3,484,962	-		GFF3444	0.86	+0.4
3,484,962	-		GFF3444	0.86	+0.0
3,484,962	-		GFF3444	0.86	+0.8
3,484,978	+		GFF3444	0.88	-0.7
3,485,015	-				+0.4
3,485,025	-				-0.5
3,485,029	+				-1.0
3,485,037	-				-2.0
3,485,037	-				+0.8
3,485,063	+				-0.9
3,485,088	+				+0.3
3,485,088	+				-0.4
3,485,096	-				+0.9
3,485,105	+				-1.3
3,485,134	+				-1.5
3,485,151	-				-0.2
3,485,240	+				+0.2
3,485,248	+				+0.2
3,485,289	+				-1.5
3,485,296	+				+0.0
3,485,296	-				-0.6
3,485,297	-				+0.1
3,485,297	-				+1.0
3,485,303	-				-0.9
3,485,305	-				+1.0
3,485,327	+		GFF3445	0.10	-0.2
3,485,329	+		GFF3445	0.11	+0.4
3,485,333	+		GFF3445	0.11	+0.5
3,485,337	+		GFF3445	0.11	-0.3
3,485,367	+		GFF3445	0.14	-0.5
3,485,380	-		GFF3445	0.15	+0.8
3,485,382	+		GFF3445	0.15	-0.1
3,485,390	-		GFF3445	0.16	+0.2
3,485,398	-		GFF3445	0.17	-0.9
3,485,398	-		GFF3445	0.17	+0.6
3,485,398	-		GFF3445	0.17	-0.1
3,485,405	+		GFF3445	0.17	+1.0
3,485,405	+		GFF3445	0.17	-1.5
3,485,405	+		GFF3445	0.17	+0.2
3,485,405	+		GFF3445	0.17	-0.5
3,485,405	+		GFF3445	0.17	-0.2
3,485,405	+		GFF3445	0.17	-0.6
3,485,406	+		GFF3445	0.17	-0.1
3,485,413	-		GFF3445	0.18	+0.2
3,485,413	-		GFF3445	0.18	+0.4
3,485,413	-		GFF3445	0.18	+1.1
3,485,413	-		GFF3445	0.18	-1.0
3,485,413	-		GFF3445	0.18	+1.7
3,485,413	-		GFF3445	0.18	+0.9
3,485,413	-		GFF3445	0.18	+1.5
3,485,415	+		GFF3445	0.18	-0.0
3,485,444	+		GFF3445	0.21	-0.6
3,485,452	-		GFF3445	0.21	-0.8
3,485,475	-		GFF3445	0.23	+0.7
3,485,485	-		GFF3445	0.24	+0.8
3,485,497	-		GFF3445	0.25	+0.1
3,485,497	-		GFF3445	0.25	-0.5
3,485,498	+		GFF3445	0.25	+0.7
3,485,506	-		GFF3445	0.26	-0.7
3,485,506	-		GFF3445	0.26	+0.1
3,485,506	-		GFF3445	0.26	+0.7
3,485,506	-		GFF3445	0.26	+0.3
3,485,506	-		GFF3445	0.26	+0.3
3,485,508	+		GFF3445	0.26	-0.8
3,485,508	+		GFF3445	0.26	-1.6
3,485,508	+		GFF3445	0.26	+0.5
3,485,536	+		GFF3445	0.29	+0.6
3,485,553	+		GFF3445	0.30	-2.4
3,485,558	+		GFF3445	0.31	-1.2
3,485,558	+		GFF3445	0.31	+2.0
3,485,558	+		GFF3445	0.31	+1.2
3,485,566	-		GFF3445	0.31	+0.1
3,485,566	-		GFF3445	0.31	-0.8
3,485,566	-		GFF3445	0.31	+1.7
3,485,566	-		GFF3445	0.31	+0.3
3,485,569	+		GFF3445	0.32	+0.1
3,485,572	+		GFF3445	0.32	-0.0
3,485,572	+		GFF3445	0.32	+0.1
3,485,572	+		GFF3445	0.32	+1.2
3,485,585	-		GFF3445	0.33	+0.5
3,485,590	-		GFF3445	0.34	-0.1
3,485,612	+		GFF3445	0.35	-0.0
3,485,621	+		GFF3445	0.36	+2.4
3,485,621	+		GFF3445	0.36	+0.7
3,485,621	+		GFF3445	0.36	+0.9
3,485,636	+		GFF3445	0.38	+0.7
3,485,656	-		GFF3445	0.39	-0.3
3,485,687	-		GFF3445	0.42	+0.9
3,485,761	+		GFF3445	0.49	+0.8
3,485,768	+		GFF3445	0.49	-0.8
3,485,773	+		GFF3445	0.50	+0.2
3,485,773	+		GFF3445	0.50	+0.2
3,485,773	+		GFF3445	0.50	+0.8
3,485,773	+		GFF3445	0.50	+1.0
3,485,783	+		GFF3445	0.50	+0.0
3,485,797	-		GFF3445	0.52	-0.5
3,485,894	+		GFF3445	0.60	+0.6
3,485,929	+		GFF3445	0.63	+0.0
3,485,949	-		GFF3445	0.65	-0.2
3,485,952	+		GFF3445	0.65	+0.8
3,485,952	+		GFF3445	0.65	+0.2
3,485,957	+		GFF3445	0.66	+0.6
3,485,957	+		GFF3445	0.66	-1.2
3,485,960	-		GFF3445	0.66	-0.5
3,485,965	-		GFF3445	0.66	+0.8
3,485,965	-		GFF3445	0.66	+1.5
3,485,970	-		GFF3445	0.67	+0.7
3,485,979	-		GFF3445	0.68	-0.6
3,485,981	-		GFF3445	0.68	+0.3
3,485,983	+		GFF3445	0.68	+0.2
3,485,991	-		GFF3445	0.69	+0.1
3,485,991	-		GFF3445	0.69	-0.0
3,485,991	-		GFF3445	0.69	-0.1
3,485,993	+		GFF3445	0.69	+0.3
3,485,997	+		GFF3445	0.69	-1.8
3,486,005	-		GFF3445	0.70	-2.5
3,486,005	-		GFF3445	0.70	-0.4
3,486,064	+		GFF3445	0.75	-1.2
3,486,065	-		GFF3445	0.75	+1.6
3,486,065	-		GFF3445	0.75	+0.2
3,486,065	-		GFF3445	0.75	-0.5
3,486,112	-		GFF3445	0.79	+1.0
3,486,112	-		GFF3445	0.79	-0.6
3,486,202	+		GFF3445	0.87	-0.3
3,486,202	+		GFF3445	0.87	+0.8
3,486,210	-		GFF3445	0.88	+1.2
3,486,210	-		GFF3445	0.88	+0.9
3,486,222	-		GFF3445	0.89	+0.9
3,486,229	+		GFF3445	0.90	+1.0
3,486,229	+		GFF3445	0.90	-0.9
3,486,232	-				+0.9
3,486,237	-				+0.3
3,486,253	+				+0.3
3,486,273	+				+0.2
3,486,279	-				-1.6
3,486,279	-				+1.8
3,486,281	-				+0.5
3,486,300	+				-0.1
3,486,333	+				+1.3
3,486,338	+				-0.6
3,486,338	+				+1.0
3,486,341	-				-0.3
3,486,346	-				-0.5
3,486,346	-				-0.2
3,486,346	-				-1.5
3,486,401	-				+0.4
3,486,430	+				-0.9
3,486,438	-				-1.7
3,486,438	-				+1.1
3,486,438	-				-0.1
3,486,453	+				-1.6
3,486,457	-				+0.0
3,486,480	+				+0.5
3,486,480	+				+0.1
3,486,488	-		GFF3446	0.12	+0.8
3,486,504	+		GFF3446	0.22	-0.7
3,486,510	+		GFF3446	0.25	+1.0
3,486,510	+		GFF3446	0.25	+0.4
3,486,511	+		GFF3446	0.26	+0.3
3,486,511	+		GFF3446	0.26	+0.7
3,486,518	-		GFF3446	0.30	-0.2
3,486,524	-		GFF3446	0.34	+0.7
3,486,533	+		GFF3446	0.40	+0.3
3,486,533	+		GFF3446	0.40	+0.9
3,486,541	-		GFF3446	0.44	+0.3
3,486,541	-		GFF3446	0.44	+0.7
3,486,585	+		GFF3446	0.72	+1.0
3,486,586	-		GFF3446	0.72	-1.2
3,486,586	-		GFF3446	0.72	-0.3
3,486,586	-		GFF3446	0.72	+0.1
3,486,603	-		GFF3446	0.83	-1.5
3,486,627	-				-1.2
3,486,634	+				+1.4
3,486,642	-				-2.6
3,486,668	+				+0.3
3,486,668	+				-0.3
3,486,668	+				-0.5
3,486,670	+				-0.9
3,486,670	+				-0.5
3,486,675	+				-1.7
3,486,676	-				-1.6
3,486,678	-				-1.3
3,486,681	-				-1.5
3,486,697	-				+1.1
3,486,718	+				-0.3
3,486,718	-				-0.9
3,486,728	+		GFF3447	0.11	-0.9
3,486,736	-		GFF3447	0.12	-0.4
3,486,736	-		GFF3447	0.12	+0.8
3,486,738	-		GFF3447	0.12	+1.9
3,486,790	+		GFF3447	0.18	-0.1
3,486,795	+		GFF3447	0.19	+0.4
3,486,798	-		GFF3447	0.19	-2.6
3,486,839	+		GFF3447	0.24	-1.0
3,486,857	+		GFF3447	0.26	-0.3
3,486,930	+		GFF3447	0.35	-1.2
3,486,938	-		GFF3447	0.36	+0.2
3,486,963	+		GFF3447	0.39	+0.2
3,486,963	+		GFF3447	0.39	-2.3
3,486,963	+		GFF3447	0.39	-0.5
3,486,963	+		GFF3447	0.39	+0.1
3,486,971	-		GFF3447	0.39	+0.2
3,486,971	-		GFF3447	0.39	-0.8
3,486,973	+		GFF3447	0.40	+1.2
3,486,973	+		GFF3447	0.40	-0.4
3,486,973	+		GFF3447	0.40	-0.9
3,486,976	-		GFF3447	0.40	-0.7
3,486,981	-		GFF3447	0.41	-0.7
3,487,007	+		GFF3447	0.44	+2.6
3,487,007	+		GFF3447	0.44	-0.8
3,487,033	+		GFF3447	0.47	-0.1
3,487,033	+		GFF3447	0.47	-0.7
3,487,033	+		GFF3447	0.47	+0.8
3,487,033	+		GFF3447	0.47	+0.0
3,487,033	+		GFF3447	0.47	-1.1
3,487,041	-		GFF3447	0.48	+0.8
3,487,041	-		GFF3447	0.48	+0.7
3,487,043	+		GFF3447	0.48	-0.5
3,487,043	+		GFF3447	0.48	-0.5
3,487,043	+		GFF3447	0.48	-1.0
3,487,051	-		GFF3447	0.49	+0.2
3,487,051	-		GFF3447	0.49	-0.8
3,487,051	-		GFF3447	0.49	+1.2
3,487,076	-		GFF3447	0.52	-0.2
3,487,076	-		GFF3447	0.52	+0.8
3,487,083	+		GFF3447	0.53	+1.3
3,487,086	-		GFF3447	0.53	+0.2
3,487,113	-		GFF3447	0.56	-0.6
3,487,121	+		GFF3447	0.57	-0.8
3,487,129	-		GFF3447	0.58	-0.1
3,487,129	-		GFF3447	0.58	+0.3
3,487,143	+		GFF3447	0.60	-0.3
3,487,158	+		GFF3447	0.61	+0.7
3,487,166	-		GFF3447	0.62	+0.7
3,487,248	+		GFF3447	0.72	+1.0
3,487,250	-		GFF3447	0.72	+1.0
3,487,251	-		GFF3447	0.72	-0.3
3,487,267	+		GFF3447	0.74	+2.5
3,487,267	+		GFF3447	0.74	+0.8
3,487,267	+		GFF3447	0.74	+0.6
3,487,267	+		GFF3447	0.74	-0.8
3,487,275	-		GFF3447	0.75	-1.9
3,487,275	-		GFF3447	0.75	+0.7
3,487,284	+		GFF3447	0.76	-0.0
3,487,324	-		GFF3447	0.81	+0.5
3,487,333	+		GFF3447	0.82	-0.1
3,487,333	+		GFF3447	0.82	-0.6
3,487,341	-		GFF3447	0.83	-0.4
3,487,341	-		GFF3447	0.83	+1.7
3,487,341	-		GFF3447	0.83	+0.5
3,487,341	-		GFF3447	0.83	+0.3