Strain Fitness in Sphingobium sp. HT1-2 around GFF3434

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,474,175	-		GFF3433	0.33	+0.1
3,474,187	+		GFF3433	0.34	-0.2
3,474,233	-		GFF3433	0.37	+0.6
3,474,233	-		GFF3433	0.37	+0.9
3,474,254	+		GFF3433	0.39	+0.3
3,474,262	-		GFF3433	0.40	-0.0
3,474,279	+		GFF3433	0.41	+0.6
3,474,335	+		GFF3433	0.45	-0.9
3,474,343	-		GFF3433	0.46	+0.3
3,474,364	-		GFF3433	0.48	-0.2
3,474,374	-		GFF3433	0.49	-0.6
3,474,383	+		GFF3433	0.49	+1.5
3,474,383	+		GFF3433	0.49	+1.7
3,474,391	-		GFF3433	0.50	-0.9
3,474,423	+		GFF3433	0.52	-1.0
3,474,431	-		GFF3433	0.53	+0.5
3,474,444	-		GFF3433	0.54	+0.5
3,474,471	+		GFF3433	0.56	+0.3
3,474,490	-		GFF3433	0.58	-0.9
3,474,504	+		GFF3433	0.59	-0.0
3,474,565	-		GFF3433	0.64	+0.6
3,474,594	+		GFF3433	0.66	+1.5
3,474,594	+		GFF3433	0.66	-1.1
3,474,603	-		GFF3433	0.67	-0.6
3,474,625	+		GFF3433	0.68	-0.2
3,474,628	-		GFF3433	0.68	+0.1
3,474,629	-		GFF3433	0.69	+0.1
3,474,638	-		GFF3433	0.69	-0.3
3,474,645	+		GFF3433	0.70	-1.0
3,474,660	-		GFF3433	0.71	-0.0
3,474,664	+		GFF3433	0.71	+0.5
3,474,665	-		GFF3433	0.71	+0.2
3,474,679	+		GFF3433	0.72	+0.6
3,474,697	+		GFF3433	0.74	-0.6
3,474,700	+		GFF3433	0.74	-1.4
3,474,707	+		GFF3433	0.75	-0.1
3,474,720	+		GFF3433	0.76	+0.7
3,474,730	+		GFF3433	0.76	-0.5
3,474,750	-		GFF3433	0.78	+0.3
3,474,758	+		GFF3433	0.79	+0.7
3,474,772	-		GFF3433	0.80	-0.9
3,474,781	+		GFF3433	0.80	+0.9
3,474,792	-		GFF3433	0.81	-1.1
3,474,794	+		GFF3433	0.81	-1.9
3,474,801	+		GFF3433	0.82	-0.9
3,474,801	+		GFF3433	0.82	-0.6
3,474,801	+		GFF3433	0.82	+0.0
3,474,801	+		GFF3433	0.82	-1.3
3,474,801	+		GFF3433	0.82	+1.0
3,474,801	+		GFF3433	0.82	-0.2
3,474,801	+		GFF3433	0.82	+1.4
3,474,801	+		GFF3433	0.82	-0.9
3,474,801	+		GFF3433	0.82	+1.3
3,474,802	-		GFF3433	0.82	-1.1
3,474,809	-		GFF3433	0.83	+0.4
3,474,809	-		GFF3433	0.83	-0.3
3,474,809	-		GFF3433	0.83	+0.5
3,474,809	-		GFF3433	0.83	-0.8
3,474,809	-		GFF3433	0.83	-0.4
3,474,809	-		GFF3433	0.83	-0.7
3,474,809	-		GFF3433	0.83	+0.2
3,474,809	-		GFF3433	0.83	-0.5
3,474,809	-		GFF3433	0.83	-0.7
3,474,810	-		GFF3433	0.83	+0.1
3,474,818	+		GFF3433	0.83	+1.4
3,474,831	-		GFF3433	0.84	+0.1
3,474,857	+		GFF3433	0.86	+0.2
3,474,857	-		GFF3433	0.86	+0.8
3,474,874	+		GFF3433	0.88	-0.4
3,474,899	+		GFF3433	0.90	-1.6
3,474,925	+				+1.2
3,474,929	+				-0.5
3,474,935	-				-0.1
3,474,944	-				-0.5
3,474,958	+				+0.2
3,474,958	+				-1.1
3,474,958	-				-0.7
3,474,963	+				+1.0
3,474,986	+				+1.5
3,474,986	+				+0.4
3,474,986	+				-0.7
3,474,986	+				-0.3
3,474,994	-				-0.3
3,474,994	-				-0.7
3,474,994	-				-0.5
3,474,994	-				-1.2
3,474,994	-				+1.2
3,474,994	-				+1.1
3,474,994	-				-0.8
3,474,994	-				-0.0
3,474,994	-				-0.3
3,474,994	-				-0.3
3,474,994	-				+0.1
3,474,996	+				+0.2
3,474,996	+				+2.7
3,474,999	-				-0.4
3,475,004	-				-1.2
3,475,014	+				+1.1
3,475,022	+				+1.8
3,475,022	-				+1.4
3,475,030	-				+0.6
3,475,030	-				-0.9
3,475,053	+				-0.4
3,475,053	+				-1.9
3,475,053	+				+0.6
3,475,066	-				-2.8
3,475,069	-				-1.2
3,475,070	+				-1.1
3,475,071	+				-0.6
3,475,078	-				-0.8
3,475,078	-				-2.1
3,475,078	-				-2.0
3,475,141	+				-0.6
3,475,326	+		GFF3434	0.22	-1.2
3,475,326	+		GFF3434	0.22	-1.4
3,475,334	-		GFF3434	0.23	-1.6
3,475,406	+		GFF3434	0.32	-0.1
3,475,485	+		GFF3434	0.42	-0.9
3,475,562	+		GFF3434	0.52	-0.8
3,475,710	-		GFF3434	0.71	-1.9
3,475,730	+		GFF3434	0.73	-0.4
3,475,868	-				-2.2
3,475,868	-				-2.5
3,475,885	+				-2.7
3,475,888	-				+1.8
3,475,888	-				-1.9
3,475,893	-				-2.3
3,475,893	-				-1.6
3,475,903	-				-2.6
3,475,941	-				-0.3
3,476,028	+				-0.4
3,476,039	+				+0.5
3,476,039	+				-1.5
3,476,059	+				-1.5
3,476,074	+				+0.1
3,476,093	+				-0.3
3,476,103	-				-2.4
3,476,107	+				+0.1
3,476,112	+				+0.0
3,476,113	-				+0.7
3,476,115	-				-0.9
3,476,115	-				-0.8
3,476,122	+		GFF3435	0.10	-0.0
3,476,122	+		GFF3435	0.10	-0.6
3,476,139	-		GFF3435	0.13	+0.6
3,476,157	+		GFF3435	0.15	-0.9
3,476,157	+		GFF3435	0.15	-0.4
3,476,158	+		GFF3435	0.15	-0.7
3,476,158	+		GFF3435	0.15	+0.2
3,476,158	+		GFF3435	0.15	+1.0
3,476,166	-		GFF3435	0.16	+0.6
3,476,166	-		GFF3435	0.16	+0.3
3,476,166	-		GFF3435	0.16	-0.4
3,476,166	-		GFF3435	0.16	+0.4
3,476,184	-		GFF3435	0.19	+1.5
3,476,184	-		GFF3435	0.19	+0.7
3,476,189	-		GFF3435	0.19	-0.9
3,476,209	+		GFF3435	0.22	-0.4
3,476,225	+		GFF3435	0.24	+0.7
3,476,225	+		GFF3435	0.24	-0.1
3,476,230	+		GFF3435	0.25	-1.0
3,476,235	+		GFF3435	0.25	-0.9
3,476,243	+		GFF3435	0.27	+0.0
3,476,244	-		GFF3435	0.27	+0.0
3,476,251	+		GFF3435	0.28	+1.8
3,476,253	+		GFF3435	0.28	-0.2
3,476,253	+		GFF3435	0.28	-0.7
3,476,253	+		GFF3435	0.28	-1.7
3,476,253	+		GFF3435	0.28	-0.3
3,476,261	-		GFF3435	0.29	+0.6
3,476,261	-		GFF3435	0.29	+0.5
3,476,261	-		GFF3435	0.29	-0.4
3,476,268	+		GFF3435	0.30	-1.6
3,476,268	+		GFF3435	0.30	-0.1
3,476,276	-		GFF3435	0.31	-1.2
3,476,325	+		GFF3435	0.37	+2.2
3,476,334	+		GFF3435	0.39	-0.7
3,476,349	-		GFF3435	0.41	+0.9
3,476,398	+		GFF3435	0.47	-0.1
3,476,400	-		GFF3435	0.47	-0.0
3,476,446	+		GFF3435	0.54	-0.0
3,476,454	-		GFF3435	0.55	-1.0
3,476,454	-		GFF3435	0.55	+0.2
3,476,454	-		GFF3435	0.55	-0.4
3,476,454	-		GFF3435	0.55	+0.3
3,476,464	-		GFF3435	0.56	-0.4
3,476,498	+		GFF3435	0.60	+0.2
3,476,498	+		GFF3435	0.60	+0.5
3,476,506	-		GFF3435	0.61	-0.2
3,476,522	-		GFF3435	0.64	-0.1
3,476,529	+		GFF3435	0.65	+1.4
3,476,534	+		GFF3435	0.65	+0.1
3,476,538	-		GFF3435	0.66	+0.0
3,476,540	+		GFF3435	0.66	-1.9
3,476,575	-		GFF3435	0.71	+0.0
3,476,579	+		GFF3435	0.71	-0.3
3,476,579	+		GFF3435	0.71	-1.0
3,476,579	+		GFF3435	0.71	+1.3
3,476,588	+		GFF3435	0.72	-0.4
3,476,596	-		GFF3435	0.73	+0.0
3,476,617	-		GFF3435	0.76	+0.3
3,476,722	+				-0.2
3,476,722	+				+0.9
3,476,759	+				+0.4
3,476,775	+				-0.4
3,476,842	+				+0.1
3,476,842	+				+0.5
3,476,846	+				-0.2
3,476,846	+				-0.2
3,476,850	-				-0.1
3,476,863	+				-0.6
3,476,901	+				-0.6
3,476,901	+				-1.7
3,476,914	-				+0.5
3,476,914	-				-0.2