Strain Fitness in Sphingobium sp. HT1-2 around GFF3407

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,452,130	-		GFF3405	0.50	+0.7
3,452,136	-		GFF3405	0.51	+0.8
3,452,138	+		GFF3405	0.51	-0.3
3,452,146	+		GFF3405	0.52	+0.2
3,452,146	+		GFF3405	0.52	-0.7
3,452,146	+		GFF3405	0.52	-1.2
3,452,146	+		GFF3405	0.52	-0.7
3,452,146	+		GFF3405	0.52	-2.1
3,452,146	+		GFF3405	0.52	-0.4
3,452,154	-		GFF3405	0.53	+1.5
3,452,159	-		GFF3405	0.53	+1.2
3,452,164	+		GFF3405	0.54	-1.0
3,452,164	+		GFF3405	0.54	-0.1
3,452,164	+		GFF3405	0.54	-0.3
3,452,164	+		GFF3405	0.54	+0.7
3,452,164	+		GFF3405	0.54	-1.1
3,452,164	+		GFF3405	0.54	-0.4
3,452,166	+		GFF3405	0.54	-0.4
3,452,166	+		GFF3405	0.54	+0.2
3,452,166	+		GFF3405	0.54	-1.9
3,452,167	-		GFF3405	0.54	-0.4
3,452,167	-		GFF3405	0.54	-0.4
3,452,169	+		GFF3405	0.54	+0.6
3,452,169	+		GFF3405	0.54	-0.6
3,452,172	-		GFF3405	0.55	-1.0
3,452,172	-		GFF3405	0.55	-0.1
3,452,172	-		GFF3405	0.55	+0.9
3,452,172	-		GFF3405	0.55	-0.6
3,452,172	-		GFF3405	0.55	-1.1
3,452,174	+		GFF3405	0.55	+0.2
3,452,174	-		GFF3405	0.55	-2.4
3,452,174	-		GFF3405	0.55	+0.7
3,452,174	-		GFF3405	0.55	+0.3
3,452,174	-		GFF3405	0.55	-0.5
3,452,174	-		GFF3405	0.55	+0.2
3,452,174	-		GFF3405	0.55	-1.7
3,452,233	-		GFF3405	0.61	-1.3
3,452,261	+		GFF3405	0.65	+1.0
3,452,269	-		GFF3405	0.65	+0.4
3,452,269	-		GFF3405	0.65	+0.8
3,452,282	-		GFF3405	0.67	+0.6
3,452,316	+		GFF3405	0.71	+0.1
3,452,324	-		GFF3405	0.72	+0.5
3,452,324	-		GFF3405	0.72	-0.2
3,452,326	+		GFF3405	0.72	-0.6
3,452,326	-		GFF3405	0.72	-2.3
3,452,326	-		GFF3405	0.72	-1.1
3,452,334	-		GFF3405	0.73	+0.6
3,452,334	-		GFF3405	0.73	-1.3
3,452,334	-		GFF3405	0.73	+0.3
3,452,334	-		GFF3405	0.73	-0.7
3,452,334	-		GFF3405	0.73	-0.6
3,452,334	-		GFF3405	0.73	+0.7
3,452,345	+		GFF3405	0.74	-1.7
3,452,350	-		GFF3405	0.74	+0.3
3,452,361	-		GFF3405	0.76	-2.3
3,452,362	+		GFF3405	0.76	-0.2
3,452,370	-		GFF3405	0.77	-1.3
3,452,370	-		GFF3405	0.77	-1.4
3,452,382	+		GFF3405	0.78	-1.9
3,452,382	+		GFF3405	0.78	-0.1
3,452,382	+		GFF3405	0.78	+0.1
3,452,390	-		GFF3405	0.79	-0.3
3,452,390	-		GFF3405	0.79	-1.3
3,452,390	-		GFF3405	0.79	+1.1
3,452,392	+		GFF3405	0.79	+0.0
3,452,393	+		GFF3405	0.79	+0.7
3,452,393	+		GFF3405	0.79	-0.6
3,452,393	+		GFF3405	0.79	-1.9
3,452,393	+		GFF3405	0.79	-0.1
3,452,393	+		GFF3405	0.79	-0.3
3,452,398	+		GFF3405	0.80	+0.7
3,452,400	-		GFF3405	0.80	+0.6
3,452,401	-		GFF3405	0.80	-2.1
3,452,401	-		GFF3405	0.80	+0.3
3,452,401	-		GFF3405	0.80	-0.4
3,452,401	-		GFF3405	0.80	+0.6
3,452,406	-		GFF3405	0.81	-0.3
3,452,413	+		GFF3405	0.82	+0.1
3,452,416	-		GFF3405	0.82	+2.0
3,452,433	+		GFF3405	0.84	+0.1
3,452,439	-		GFF3405	0.84	-0.1
3,452,447	-		GFF3405	0.85	+0.1
3,452,447	-		GFF3405	0.85	-2.0
3,452,457	+		GFF3405	0.86	+0.3
3,452,465	-		GFF3405	0.87	+0.2
3,452,467	+		GFF3405	0.88	-0.7
3,452,467	+		GFF3405	0.88	-1.0
3,452,469	+		GFF3405	0.88	-0.6
3,452,470	-		GFF3405	0.88	-0.5
3,452,474	-		GFF3405	0.88	+0.3
3,452,475	-		GFF3405	0.88	+0.3
3,452,484	+		GFF3405	0.89	+0.4
3,452,484	+		GFF3405	0.89	+0.1
3,452,484	+		GFF3405	0.89	-1.8
3,452,492	-				-0.9
3,452,525	-				-1.1
3,452,530	-				+0.5
3,452,543	-				+0.3
3,452,589	-				+1.0
3,452,613	+		GFF3406	0.10	-1.9
3,452,623	-		GFF3406	0.13	-0.6
3,452,635	+		GFF3406	0.16	-1.1
3,452,667	+		GFF3406	0.25	-0.9
3,452,670	-		GFF3406	0.26	-0.0
3,452,671	+		GFF3406	0.26	-1.7
3,452,671	+		GFF3406	0.26	+0.2
3,452,688	+		GFF3406	0.31	+0.7
3,452,688	+		GFF3406	0.31	+0.6
3,452,696	+		GFF3406	0.33	+0.1
3,452,696	-		GFF3406	0.33	+0.3
3,452,696	-		GFF3406	0.33	-1.5
3,452,705	-		GFF3406	0.35	-2.2
3,452,751	-		GFF3406	0.48	-0.5
3,452,768	-		GFF3406	0.52	-2.2
3,452,778	+		GFF3406	0.55	+1.2
3,452,778	+		GFF3406	0.55	-1.0
3,452,793	+		GFF3406	0.59	-0.9
3,452,796	-		GFF3406	0.60	+0.3
3,452,801	-		GFF3406	0.61	-0.0
3,452,801	-		GFF3406	0.61	-0.1
3,452,801	-		GFF3406	0.61	-1.1
3,452,801	-		GFF3406	0.61	-0.9
3,452,810	+		GFF3406	0.63	+1.4
3,452,812	+		GFF3406	0.64	-1.2
3,452,812	+		GFF3406	0.64	-0.6
3,452,812	+		GFF3406	0.64	+0.1
3,452,820	-		GFF3406	0.66	+0.3
3,452,820	-		GFF3406	0.66	-0.2
3,452,820	-		GFF3406	0.66	-0.3
3,452,831	-		GFF3406	0.69	+0.4
3,452,865	+		GFF3406	0.78	-0.7
3,452,900	+		GFF3406	0.88	+0.6
3,452,947	-				-1.3
3,452,960	+				-0.1
3,452,966	+				-0.2
3,453,137	-				-0.1
3,453,169	+		GFF3407	0.14	-1.8
3,453,194	-		GFF3407	0.21	-1.7
3,453,194	-		GFF3407	0.21	+0.6
3,453,213	-		GFF3407	0.26	-2.3
3,453,215	+		GFF3407	0.26	+0.9
3,453,215	+		GFF3407	0.26	-0.2
3,453,215	+		GFF3407	0.26	+0.9
3,453,223	-		GFF3407	0.28	-0.9
3,453,252	+		GFF3407	0.36	+0.1
3,453,260	-		GFF3407	0.38	+0.2
3,453,262	+		GFF3407	0.38	-0.9
3,453,263	+		GFF3407	0.39	+0.3
3,453,263	+		GFF3407	0.39	-0.5
3,453,269	+		GFF3407	0.40	-0.3
3,453,271	-		GFF3407	0.41	+0.1
3,453,279	-		GFF3407	0.43	+0.1
3,453,302	+		GFF3407	0.49	-0.0
3,453,302	+		GFF3407	0.49	-1.2
3,453,310	-		GFF3407	0.51	-0.3
3,453,310	-		GFF3407	0.51	-0.7
3,453,310	-		GFF3407	0.51	-0.8
3,453,316	-		GFF3407	0.52	-0.8
3,453,335	+		GFF3407	0.57	-0.1
3,453,336	+		GFF3407	0.57	-2.3
3,453,358	-		GFF3407	0.63	-0.3
3,453,362	+		GFF3407	0.64	-0.8
3,453,395	-		GFF3407	0.73	-2.8
3,453,426	+		GFF3407	0.81	+0.9
3,453,426	+		GFF3407	0.81	+0.5
3,453,434	-		GFF3407	0.83	-1.1
3,453,434	-		GFF3407	0.83	-1.3
3,453,434	-		GFF3407	0.83	+0.8
3,453,436	+		GFF3407	0.83	-0.5
3,453,436	+		GFF3407	0.83	-2.0
3,453,438	+		GFF3407	0.84	-1.3
3,453,439	-		GFF3407	0.84	-0.8
3,453,444	-		GFF3407	0.85	+0.6
3,453,444	-		GFF3407	0.85	-0.2
3,453,444	-		GFF3407	0.85	-0.6
3,453,462	+				+1.0
3,453,475	+				-1.0
3,453,480	+				-2.5
3,453,480	+				-1.7
3,453,483	-				-0.3
3,453,488	-				+0.1
3,453,488	-				-1.9
3,453,488	-				-1.2
3,453,488	-				-0.2
3,453,488	-				-0.3
3,453,489	+				-0.9
3,453,515	+				+0.3
3,453,520	+				-0.4
3,453,520	+				-2.3
3,453,523	-				-0.4
3,453,537	+				-0.6
3,453,537	+				+1.4
3,453,537	+				-2.3
3,453,537	+				+0.4
3,453,537	-				-1.4
3,453,545	-		GFF3408	0.12	-0.5
3,453,545	-		GFF3408	0.12	-2.2
3,453,545	-		GFF3408	0.12	-1.8
3,453,588	+		GFF3408	0.28	+1.1
3,453,588	+		GFF3408	0.28	+0.9
3,453,636	-		GFF3408	0.46	-0.8
3,453,670	+		GFF3408	0.58	-3.1
3,453,671	-		GFF3408	0.59	-0.2
3,453,674	+		GFF3408	0.60	+1.0
3,453,674	+		GFF3408	0.60	-1.0
3,453,681	-		GFF3408	0.62	-1.9
3,453,683	-		GFF3408	0.63	-0.7
3,453,683	-		GFF3408	0.63	-1.9
3,453,683	-		GFF3408	0.63	-1.6
3,453,683	-		GFF3408	0.63	+0.8
3,453,684	+		GFF3408	0.63	-0.2
3,453,714	+		GFF3408	0.74	+0.7
3,453,721	+		GFF3408	0.77	-1.2
3,453,729	-		GFF3408	0.80	-1.2
3,453,729	-		GFF3408	0.80	-0.1
3,453,729	-		GFF3408	0.80	-0.1
3,453,729	-		GFF3408	0.80	-0.9
3,453,729	-		GFF3408	0.80	+0.1
3,453,802	+		GFF3409	0.11	+0.8
3,453,839	+		GFF3409	0.27	-1.9
3,453,840	-		GFF3409	0.28	-1.7
3,453,847	-		GFF3409	0.31	-1.0
3,453,899	+		GFF3409	0.55	+0.2
3,453,899	+		GFF3409	0.55	-1.0
3,453,899	+		GFF3409	0.55	+0.6
3,453,907	-		GFF3409	0.58	-1.1
3,453,907	-		GFF3409	0.58	-0.3
3,453,907	-		GFF3409	0.58	+1.1
3,453,923	+		GFF3409	0.66	-0.7
3,453,925	-		GFF3409	0.67	-2.2
3,453,933	-		GFF3409	0.70	-1.8
3,453,954	+		GFF3409	0.80	+1.0
3,453,970	-		GFF3409	0.87	-0.4
3,453,970	-		GFF3409	0.87	-0.5
3,453,985	+				+0.9
3,453,985	+				-0.3
3,453,993	-				-0.1
3,453,997	+				-0.5
3,454,008	+				+0.1
3,454,008	+				+0.9
3,454,016	+		GFF3410	0.11	-0.5
3,454,016	+		GFF3410	0.11	-0.2
3,454,024	-		GFF3410	0.15	+0.5
3,454,024	-		GFF3410	0.15	-0.1
3,454,031	-		GFF3410	0.18	-0.3
3,454,053	+		GFF3410	0.29	-0.2
3,454,063	+		GFF3410	0.34	-0.4
3,454,100	+		GFF3410	0.52	-0.3
3,454,100	+		GFF3410	0.52	-0.6
3,454,100	+		GFF3410	0.52	+0.3
3,454,100	+		GFF3410	0.52	-0.8
3,454,108	-		GFF3410	0.56	-0.0
3,454,113	-		GFF3410	0.58	+0.1
3,454,113	-		GFF3410	0.58	-1.8
3,454,128	+		GFF3410	0.66	+0.0
3,454,160	-		GFF3410	0.81	-0.2
3,454,162	+		GFF3410	0.82	+0.8
3,454,162	+		GFF3410	0.82	+0.2
3,454,162	+		GFF3410	0.82	-0.1
3,454,162	+		GFF3410	0.82	+0.1
3,454,162	+		GFF3410	0.82	+0.3
3,454,162	+		GFF3410	0.82	+0.2
3,454,162	+		GFF3410	0.82	-0.3
3,454,170	-		GFF3410	0.86	-0.8
3,454,170	-		GFF3410	0.86	-0.4
3,454,170	-		GFF3410	0.86	-2.3
3,454,170	-		GFF3410	0.86	-0.8
3,454,170	-		GFF3410	0.86	-0.8
3,454,177	-				-0.6
3,454,177	-				+0.8
3,454,177	-				-1.0
3,454,185	+				-0.3
3,454,193	-				+0.3
3,454,207	+				-0.9
3,454,217	+				-1.3
3,454,217	+				-2.0
3,454,217	+				+0.7
3,454,225	+				+0.3
3,454,225	-				-1.7
3,454,225	-				+0.6
3,454,237	+		GFF3411	0.12	-0.6
3,454,238	-		GFF3411	0.12	+0.3
3,454,245	-		GFF3411	0.14	+1.0
3,454,284	+		GFF3411	0.25	+0.6
3,454,309	+		GFF3411	0.31	+0.6
3,454,317	-		GFF3411	0.34	-0.9
3,454,319	-		GFF3411	0.34	-0.0
3,454,322	-		GFF3411	0.35	+0.7
3,454,330	-		GFF3411	0.37	-0.1
3,454,348	+		GFF3411	0.42	+0.1
3,454,368	+		GFF3411	0.48	-0.4
3,454,407	+		GFF3411	0.58	-1.0
3,454,416	-		GFF3411	0.61	+0.3
3,454,435	+		GFF3411	0.66	-0.2
3,454,437	+		GFF3411	0.66	-0.3
3,454,440	+		GFF3411	0.67	-0.2
3,454,448	-		GFF3411	0.69	-0.4
3,454,448	-		GFF3411	0.69	-1.8
3,454,479	+		GFF3411	0.78	-0.2
3,454,479	+		GFF3411	0.78	-1.1
3,454,479	+		GFF3411	0.78	+0.7
3,454,479	+		GFF3411	0.78	+0.1
3,454,479	+		GFF3411	0.78	-0.1
3,454,495	-		GFF3411	0.82	+0.1
3,454,497	+		GFF3411	0.83	-1.0
3,454,497	+		GFF3411	0.83	+0.2
3,454,497	+		GFF3411	0.83	-1.5
3,454,497	+		GFF3411	0.83	-0.6
3,454,497	+		GFF3411	0.83	-2.4