Strain Fitness in Sphingobium sp. HT1-2 around GFF3395

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,435,397	+		GFF3394	0.31	+0.8
3,435,404	+		GFF3394	0.32	+0.1
3,435,404	+		GFF3394	0.32	+0.4
3,435,405	-		GFF3394	0.32	+1.7
3,435,419	+		GFF3394	0.34	+0.4
3,435,419	+		GFF3394	0.34	-0.1
3,435,427	-		GFF3394	0.35	+0.4
3,435,432	+		GFF3394	0.35	+1.1
3,435,438	-		GFF3394	0.36	+0.2
3,435,446	+		GFF3394	0.37	+0.7
3,435,448	-		GFF3394	0.37	+0.1
3,435,464	+		GFF3394	0.39	+0.6
3,435,464	-		GFF3394	0.39	-1.7
3,435,470	+		GFF3394	0.39	+0.4
3,435,471	+		GFF3394	0.40	+0.2
3,435,478	-		GFF3394	0.40	+0.7
3,435,478	-		GFF3394	0.40	+1.3
3,435,479	-		GFF3394	0.40	+1.7
3,435,495	+		GFF3394	0.42	-0.2
3,435,503	-		GFF3394	0.43	+0.9
3,435,518	-		GFF3394	0.45	+1.2
3,435,547	+		GFF3394	0.48	+0.9
3,435,673	+		GFF3394	0.62	+1.3
3,435,679	+		GFF3394	0.62	+0.1
3,435,679	+		GFF3394	0.62	+1.0
3,435,679	+		GFF3394	0.62	+0.9
3,435,679	+		GFF3394	0.62	+1.0
3,435,686	-		GFF3394	0.63	-0.1
3,435,686	-		GFF3394	0.63	+0.0
3,435,687	-		GFF3394	0.63	-1.9
3,435,687	-		GFF3394	0.63	-1.0
3,435,754	-		GFF3394	0.71	-1.9
3,435,817	+		GFF3394	0.78	-1.7
3,435,821	+		GFF3394	0.78	-0.6
3,435,840	+		GFF3394	0.80	+0.7
3,435,841	-		GFF3394	0.80	+2.1
3,435,848	-		GFF3394	0.81	-0.4
3,435,848	-		GFF3394	0.81	-0.4
3,435,855	-		GFF3394	0.82	+0.3
3,435,857	+		GFF3394	0.82	-0.8
3,435,860	-		GFF3394	0.82	+0.7
3,435,865	-		GFF3394	0.83	+0.8
3,435,865	-		GFF3394	0.83	+0.6
3,435,865	-		GFF3394	0.83	+0.2
3,435,865	-		GFF3394	0.83	+0.3
3,435,875	+		GFF3394	0.84	-0.8
3,435,883	-		GFF3394	0.85	+1.7
3,435,883	-		GFF3394	0.85	-0.4
3,435,919	+		GFF3394	0.89	+0.4
3,435,919	+		GFF3394	0.89	-0.2
3,435,927	-		GFF3394	0.90	+1.0
3,435,929	+				+0.1
3,435,929	+				-0.7
3,435,929	+				-1.3
3,435,929	+				-0.1
3,435,929	+				+0.7
3,435,937	-				-0.1
3,435,952	+				-0.7
3,435,962	+				-1.6
3,435,972	+				+1.2
3,436,033	+				+0.5
3,436,098	-				+1.1
3,436,100	+				+0.1
3,436,107	+				+0.3
3,436,107	+				-0.7
3,436,107	+				+0.7
3,436,107	+				-0.3
3,436,107	+				+0.4
3,436,107	+				+0.1
3,436,108	-				+0.5
3,436,108	-				+0.0
3,436,115	-				-0.2
3,436,115	-				-0.3
3,436,294	-				-1.8
3,436,326	-				-1.3
3,436,342	+				-0.2
3,436,342	-				-0.9
3,436,356	+				-0.7
3,436,366	+				+0.5
3,436,395	+				+1.5
3,436,395	+				+0.3
3,436,395	+				+1.0
3,436,396	+				+0.5
3,436,396	-				+0.1
3,436,403	-				+0.1
3,436,404	-				-0.5
3,436,413	+				+0.7
3,436,414	+				+0.3
3,436,414	+				+1.6
3,436,416	-				+0.3
3,436,435	+				-0.9
3,436,435	+				+0.1
3,436,435	+				+0.8
3,436,435	+				+0.5
3,436,436	+				+0.8
3,436,443	-				+0.5
3,436,443	-				-0.6
3,436,450	+				+0.5
3,436,452	+				-0.4
3,436,453	-				+0.4
3,436,458	-				-1.9
3,436,468	+				+1.5
3,436,476	-				-2.4
3,436,478	+				+2.3
3,436,487	+				+0.7
3,436,514	+				+0.1
3,436,514	+				+0.7
3,436,523	+				+0.2
3,436,533	+				+0.5
3,436,533	+				-1.4
3,436,533	+				+1.0
3,436,533	+				+1.4
3,436,541	-				+1.4
3,436,541	-				+0.7
3,436,541	-				+0.3
3,436,541	-				-1.5
3,436,547	-				-1.4
3,436,547	-				+0.6
3,436,547	-				+0.9
3,436,571	+				-0.6
3,436,571	+				+0.7
3,436,571	+				+0.9
3,436,574	-		GFF3395	0.10	+1.0
3,436,581	+		GFF3395	0.10	+1.6
3,436,581	-		GFF3395	0.10	+0.1
3,436,589	-		GFF3395	0.11	-1.7
3,436,589	-		GFF3395	0.11	-0.6
3,436,623	+		GFF3395	0.12	+0.1
3,436,623	+		GFF3395	0.12	-0.3
3,436,631	-		GFF3395	0.12	+0.4
3,436,646	-		GFF3395	0.13	+0.9
3,436,651	+		GFF3395	0.13	+0.7
3,436,657	+		GFF3395	0.13	+0.3
3,436,676	+		GFF3395	0.14	+1.2
3,436,676	+		GFF3395	0.14	-1.3
3,436,684	-		GFF3395	0.15	+1.5
3,436,689	-		GFF3395	0.15	+0.0
3,436,695	+		GFF3395	0.15	+0.1
3,436,697	+		GFF3395	0.15	+0.7
3,436,703	-		GFF3395	0.15	+0.9
3,436,705	+		GFF3395	0.15	+0.3
3,436,712	+		GFF3395	0.16	+0.7
3,436,712	+		GFF3395	0.16	+0.4
3,436,712	+		GFF3395	0.16	-0.9
3,436,712	+		GFF3395	0.16	-0.4
3,436,713	-		GFF3395	0.16	+0.0
3,436,713	-		GFF3395	0.16	+0.1
3,436,713	-		GFF3395	0.16	+0.8
3,436,720	-		GFF3395	0.16	+0.2
3,436,723	+		GFF3395	0.16	+0.5
3,436,747	+		GFF3395	0.17	-0.1
3,436,757	+		GFF3395	0.18	+1.6
3,436,757	+		GFF3395	0.18	+0.1
3,436,765	-		GFF3395	0.18	-0.4
3,436,765	-		GFF3395	0.18	+0.6
3,436,797	+		GFF3395	0.19	-0.2
3,436,829	+		GFF3395	0.21	-0.7
3,436,829	+		GFF3395	0.21	+1.7
3,436,860	-		GFF3395	0.22	+0.9
3,436,862	+		GFF3395	0.22	+0.1
3,436,898	+		GFF3395	0.23	-0.2
3,436,904	-		GFF3395	0.24	+1.6
3,436,949	-		GFF3395	0.25	+0.3
3,436,949	-		GFF3395	0.25	+1.1
3,436,972	-		GFF3395	0.26	+0.6
3,436,992	+		GFF3395	0.27	-1.9
3,436,992	+		GFF3395	0.27	-0.4
3,436,997	+		GFF3395	0.27	+0.3
3,436,997	+		GFF3395	0.27	+0.4
3,437,005	-		GFF3395	0.28	+0.1
3,437,015	-		GFF3395	0.28	+1.3
3,437,017	+		GFF3395	0.28	-2.4
3,437,024	+		GFF3395	0.28	-0.7
3,437,024	+		GFF3395	0.28	+1.8
3,437,025	-		GFF3395	0.29	+1.4
3,437,025	-		GFF3395	0.29	+0.9
3,437,027	+		GFF3395	0.29	-0.2
3,437,027	+		GFF3395	0.29	+0.0
3,437,033	+		GFF3395	0.29	+1.0
3,437,037	-		GFF3395	0.29	+0.4
3,437,037	-		GFF3395	0.29	+0.6
3,437,040	+		GFF3395	0.29	-0.4
3,437,040	+		GFF3395	0.29	+0.6
3,437,040	+		GFF3395	0.29	+0.1
3,437,048	-		GFF3395	0.29	+0.2
3,437,048	-		GFF3395	0.29	+0.6
3,437,095	-		GFF3395	0.31	+0.4
3,437,113	+		GFF3395	0.32	-2.3
3,437,123	+		GFF3395	0.33	+0.0
3,437,129	+		GFF3395	0.33	+1.4
3,437,131	-		GFF3395	0.33	+0.7
3,437,137	+		GFF3395	0.33	+0.9
3,437,137	+		GFF3395	0.33	+1.7
3,437,145	-		GFF3395	0.33	+0.9
3,437,154	+		GFF3395	0.34	+1.1
3,437,179	-		GFF3395	0.35	+1.4
3,437,190	+		GFF3395	0.35	+0.1
3,437,196	-		GFF3395	0.36	+0.6
3,437,198	+		GFF3395	0.36	+0.6
3,437,198	+		GFF3395	0.36	+0.0
3,437,206	+		GFF3395	0.36	-1.6
3,437,206	-		GFF3395	0.36	-0.4
3,437,212	-		GFF3395	0.36	-1.4
3,437,230	+		GFF3395	0.37	+0.1
3,437,242	+		GFF3395	0.37	+0.5
3,437,247	+		GFF3395	0.38	+1.1
3,437,247	+		GFF3395	0.38	+1.8
3,437,247	+		GFF3395	0.38	+0.0
3,437,279	+		GFF3395	0.39	+0.8
3,437,281	-		GFF3395	0.39	-0.4
3,437,282	-		GFF3395	0.39	+0.3
3,437,300	+		GFF3395	0.40	+0.9
3,437,308	+		GFF3395	0.40	+0.5
3,437,308	-		GFF3395	0.40	-0.6
3,437,311	-		GFF3395	0.40	+1.7
3,437,311	-		GFF3395	0.40	+0.6
3,437,314	+		GFF3395	0.40	-1.7
3,437,316	-		GFF3395	0.40	+0.9
3,437,316	-		GFF3395	0.40	-0.4
3,437,318	-		GFF3395	0.41	+0.9
3,437,324	+		GFF3395	0.41	+0.6
3,437,326	-		GFF3395	0.41	+2.2
3,437,326	-		GFF3395	0.41	+0.1
3,437,343	-		GFF3395	0.42	+1.3
3,437,345	+		GFF3395	0.42	-0.5
3,437,345	+		GFF3395	0.42	+0.3
3,437,345	+		GFF3395	0.42	+0.6
3,437,345	+		GFF3395	0.42	-1.4
3,437,345	+		GFF3395	0.42	+0.3
3,437,345	+		GFF3395	0.42	-0.2
3,437,345	+		GFF3395	0.42	+2.1
3,437,345	+		GFF3395	0.42	+0.1
3,437,345	+		GFF3395	0.42	-0.5
3,437,345	+		GFF3395	0.42	-0.4
3,437,346	+		GFF3395	0.42	+1.7
3,437,353	-		GFF3395	0.42	+0.1
3,437,353	-		GFF3395	0.42	+0.4
3,437,353	-		GFF3395	0.42	-1.0
3,437,353	-		GFF3395	0.42	+0.0
3,437,353	-		GFF3395	0.42	+0.2
3,437,387	+		GFF3395	0.43	-1.2
3,437,389	-		GFF3395	0.43	+1.3
3,437,410	-		GFF3395	0.44	-0.5
3,437,412	+		GFF3395	0.44	-0.3
3,437,412	-		GFF3395	0.44	+0.8
3,437,444	-		GFF3395	0.46	-0.3
3,437,448	+		GFF3395	0.46	-0.2
3,437,448	+		GFF3395	0.46	+0.0
3,437,456	-		GFF3395	0.46	+1.5
3,437,463	+		GFF3395	0.46	+1.1
3,437,466	-		GFF3395	0.47	-0.3
3,437,466	-		GFF3395	0.47	-1.7
3,437,466	-		GFF3395	0.47	+1.0
3,437,471	-		GFF3395	0.47	+1.3
3,437,480	+		GFF3395	0.47	-0.4
3,437,480	+		GFF3395	0.47	-1.0
3,437,480	+		GFF3395	0.47	+1.9
3,437,486	+		GFF3395	0.47	+0.9
3,437,486	+		GFF3395	0.47	+0.5
3,437,488	-		GFF3395	0.48	-0.6
3,437,488	-		GFF3395	0.48	+0.5
3,437,488	-		GFF3395	0.48	+1.3
3,437,498	+		GFF3395	0.48	+1.5
3,437,510	-		GFF3395	0.48	-0.1
3,437,554	+		GFF3395	0.50	-0.2
3,437,561	+		GFF3395	0.51	+0.6
3,437,561	+		GFF3395	0.51	+0.7
3,437,562	-		GFF3395	0.51	+1.6
3,437,569	-		GFF3395	0.51	-2.0
3,437,569	-		GFF3395	0.51	-0.3
3,437,571	+		GFF3395	0.51	+0.4
3,437,571	+		GFF3395	0.51	+0.7
3,437,571	+		GFF3395	0.51	-1.3
3,437,575	+		GFF3395	0.51	+1.6
3,437,579	-		GFF3395	0.51	+0.7
3,437,579	-		GFF3395	0.51	-0.1
3,437,579	-		GFF3395	0.51	-0.2
3,437,579	-		GFF3395	0.51	+0.1
3,437,579	-		GFF3395	0.51	-1.9
3,437,584	+		GFF3395	0.51	+0.4
3,437,589	+		GFF3395	0.52	+0.1
3,437,597	-		GFF3395	0.52	-0.7
3,437,608	+		GFF3395	0.52	+0.8
3,437,615	-		GFF3395	0.53	-0.0
3,437,617	+		GFF3395	0.53	+1.0
3,437,617	+		GFF3395	0.53	+1.6
3,437,625	-		GFF3395	0.53	+1.4
3,437,625	-		GFF3395	0.53	+1.0
3,437,635	+		GFF3395	0.54	+0.7
3,437,651	+		GFF3395	0.54	-0.6
3,437,665	-		GFF3395	0.55	+0.6
3,437,721	+		GFF3395	0.57	-0.2
3,437,727	-		GFF3395	0.57	+1.1
3,437,727	-		GFF3395	0.57	+1.5
3,437,733	+		GFF3395	0.58	-1.2
3,437,741	-		GFF3395	0.58	+0.6
3,437,745	+		GFF3395	0.58	-1.8
3,437,750	+		GFF3395	0.58	+0.8
3,437,753	-		GFF3395	0.58	-0.1
3,437,765	+		GFF3395	0.59	+0.7
3,437,767	-		GFF3395	0.59	-2.4
3,437,797	-		GFF3395	0.60	-0.5
3,437,801	+		GFF3395	0.60	+0.3
3,437,803	+		GFF3395	0.60	+0.2
3,437,803	-		GFF3395	0.60	-0.8
3,437,810	-		GFF3395	0.61	-0.7
3,437,810	-		GFF3395	0.61	-1.4
3,437,822	+		GFF3395	0.61	+1.1
3,437,822	+		GFF3395	0.61	+0.0
3,437,830	-		GFF3395	0.62	+1.1
3,437,830	-		GFF3395	0.62	+0.9
3,437,838	-		GFF3395	0.62	+1.2
3,437,838	-		GFF3395	0.62	+0.1
3,437,838	-		GFF3395	0.62	+0.3
3,437,853	+		GFF3395	0.62	-1.4
3,437,900	-		GFF3395	0.64	-0.7
3,437,904	+		GFF3395	0.65	+0.9
3,437,936	-		GFF3395	0.66	-0.4
3,437,936	-		GFF3395	0.66	+0.7
3,437,949	-		GFF3395	0.66	-0.2
3,437,968	+		GFF3395	0.67	+1.2
3,438,013	-		GFF3395	0.69	-0.3
3,438,014	+		GFF3395	0.69	+0.0
3,438,022	+		GFF3395	0.69	+0.0
3,438,022	+		GFF3395	0.69	-0.6
3,438,041	-		GFF3395	0.70	+0.1
3,438,058	-		GFF3395	0.71	+0.5
3,438,075	+		GFF3395	0.72	-1.8
3,438,075	+		GFF3395	0.72	+0.2
3,438,077	+		GFF3395	0.72	+0.2
3,438,077	+		GFF3395	0.72	+0.1
3,438,093	+		GFF3395	0.72	+1.0
3,438,112	+		GFF3395	0.73	-0.3
3,438,112	+		GFF3395	0.73	+0.4
3,438,112	+		GFF3395	0.73	-0.7
3,438,120	-		GFF3395	0.73	+0.0
3,438,120	-		GFF3395	0.73	+0.1
3,438,120	-		GFF3395	0.73	+0.7
3,438,120	-		GFF3395	0.73	+1.1
3,438,130	+		GFF3395	0.74	-0.7
3,438,130	+		GFF3395	0.74	+0.1
3,438,130	+		GFF3395	0.74	+0.8
3,438,130	-		GFF3395	0.74	+0.2
3,438,142	-		GFF3395	0.74	-0.2
3,438,142	-		GFF3395	0.74	+0.0
3,438,168	+		GFF3395	0.75	+0.8
3,438,176	-		GFF3395	0.76	-0.2
3,438,176	-		GFF3395	0.76	-0.0
3,438,176	-		GFF3395	0.76	+1.3
3,438,176	-		GFF3395	0.76	+1.9
3,438,239	+		GFF3395	0.78	+0.5
3,438,261	+		GFF3395	0.79	+0.3
3,438,269	-		GFF3395	0.80	+1.3
3,438,315	+		GFF3395	0.81	-0.4
3,438,315	+		GFF3395	0.81	-1.3
3,438,323	-		GFF3395	0.82	-1.6
3,438,323	-		GFF3395	0.82	+0.5
3,438,323	-		GFF3395	0.82	+2.2
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