Strain Fitness in Sphingobium sp. HT1-2 around GFF3394

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,434,113	+		GFF3393	0.74	+0.4
3,434,113	+		GFF3393	0.74	+1.4
3,434,113	+		GFF3393	0.74	+1.5
3,434,116	-		GFF3393	0.74	+0.7
3,434,116	-		GFF3393	0.74	+0.1
3,434,121	-		GFF3393	0.74	+0.3
3,434,145	+		GFF3393	0.75	+0.3
3,434,145	+		GFF3393	0.75	-0.4
3,434,145	+		GFF3393	0.75	-1.7
3,434,145	+		GFF3393	0.75	-1.0
3,434,145	+		GFF3393	0.75	+0.2
3,434,153	-		GFF3393	0.75	-0.0
3,434,158	-		GFF3393	0.76	-1.5
3,434,160	-		GFF3393	0.76	+0.0
3,434,198	-		GFF3393	0.77	-1.3
3,434,208	-		GFF3393	0.77	+0.4
3,434,224	-		GFF3393	0.78	-0.1
3,434,239	-		GFF3393	0.78	-0.9
3,434,239	-		GFF3393	0.78	-0.1
3,434,239	-		GFF3393	0.78	-0.1
3,434,258	-		GFF3393	0.79	+0.3
3,434,258	-		GFF3393	0.79	-0.1
3,434,259	-		GFF3393	0.79	-1.1
3,434,259	-		GFF3393	0.79	-0.9
3,434,272	+		GFF3393	0.79	+1.3
3,434,273	+		GFF3393	0.80	+1.0
3,434,282	-		GFF3393	0.80	+1.5
3,434,322	+		GFF3393	0.81	+0.5
3,434,333	+		GFF3393	0.82	-0.1
3,434,340	-		GFF3393	0.82	-0.9
3,434,378	-		GFF3393	0.83	+0.3
3,434,422	+		GFF3393	0.85	-2.4
3,434,422	+		GFF3393	0.85	+0.2
3,434,422	+		GFF3393	0.85	-0.0
3,434,422	+		GFF3393	0.85	+0.4
3,434,422	+		GFF3393	0.85	-0.3
3,434,422	+		GFF3393	0.85	-1.8
3,434,422	+		GFF3393	0.85	+1.5
3,434,422	+		GFF3393	0.85	-0.6
3,434,430	-		GFF3393	0.85	+0.6
3,434,430	-		GFF3393	0.85	-1.4
3,434,430	-		GFF3393	0.85	+0.9
3,434,430	-		GFF3393	0.85	+1.5
3,434,430	-		GFF3393	0.85	+0.2
3,434,430	-		GFF3393	0.85	+0.1
3,434,430	-		GFF3393	0.85	+0.1
3,434,430	-		GFF3393	0.85	-1.1
3,434,452	+		GFF3393	0.86	-0.7
3,434,456	-		GFF3393	0.86	+0.4
3,434,460	-		GFF3393	0.86	+0.5
3,434,460	-		GFF3393	0.86	-1.3
3,434,460	-		GFF3393	0.86	-0.6
3,434,478	+		GFF3393	0.86	+0.5
3,434,487	+		GFF3393	0.87	-0.4
3,434,492	+		GFF3393	0.87	-0.7
3,434,492	+		GFF3393	0.87	-1.3
3,434,495	-		GFF3393	0.87	-1.3
3,434,516	+		GFF3393	0.88	+0.2
3,434,528	-		GFF3393	0.88	+1.3
3,434,535	+		GFF3393	0.88	+1.0
3,434,535	+		GFF3393	0.88	+0.7
3,434,542	+		GFF3393	0.89	-0.9
3,434,542	+		GFF3393	0.89	+1.0
3,434,543	-		GFF3393	0.89	+1.1
3,434,553	+		GFF3393	0.89	-0.2
3,434,560	-		GFF3393	0.89	+2.1
3,434,561	-		GFF3393	0.89	-0.3
3,434,590	+				-0.1
3,434,597	-				-1.2
3,434,633	+				-0.7
3,434,633	+				-0.2
3,434,638	+				+1.0
3,434,638	+				-0.7
3,434,638	+				-0.9
3,434,641	-				+0.6
3,434,641	-				+1.1
3,434,641	-				+1.5
3,434,641	-				+0.5
3,434,643	-				+0.1
3,434,646	-				-1.8
3,434,646	-				+1.0
3,434,646	-				+0.3
3,434,649	+				+0.9
3,434,678	+				-1.3
3,434,683	+				-1.0
3,434,684	+				+0.2
3,434,684	+				+1.2
3,434,687	-				-1.3
3,434,692	-				-1.7
3,434,704	+				+0.1
3,434,706	+				-0.2
3,434,706	+				+0.1
3,434,706	+				+1.0
3,434,706	+				-0.3
3,434,706	+				+0.1
3,434,706	+				-0.6
3,434,706	+				+0.2
3,434,706	+				+0.7
3,434,706	-				+0.9
3,434,706	-				+1.1
3,434,714	-				+1.2
3,434,714	-				+0.1
3,434,721	-				+0.4
3,434,732	+				+0.3
3,434,732	+				+1.3
3,434,740	-				+0.3
3,434,751	+				+0.4
3,434,763	+				+1.4
3,434,775	+				-0.7
3,434,783	-				+0.3
3,434,783	-				+1.0
3,434,783	-				+0.1
3,434,803	+				-0.4
3,434,803	+				+1.7
3,434,808	+				+1.2
3,434,808	+				+0.4
3,434,808	+				+0.4
3,434,816	-				-1.7
3,434,825	-				+1.7
3,434,827	+				+1.1
3,434,840	-				+0.3
3,434,862	+				-0.4
3,434,862	+				-0.1
3,434,862	+				+0.8
3,434,868	-				+0.4
3,434,870	+				+0.1
3,434,870	+				+2.7
3,434,870	+				+0.4
3,434,870	+				+0.7
3,434,870	+				-0.5
3,434,870	-				+1.8
3,434,870	-				-1.4
3,434,875	+				+0.1
3,434,875	+				+1.1
3,434,875	+				-0.4
3,434,878	-				-0.6
3,434,878	-				+1.7
3,434,878	-				+1.3
3,434,883	-				+2.0
3,434,899	-				+1.7
3,434,930	+				+0.4
3,434,933	-				-2.0
3,434,934	-				+0.1
3,434,934	-				-0.4
3,434,940	+				+0.4
3,434,940	-				-0.4
3,434,962	+				-0.4
3,434,962	+				+1.1
3,434,980	-				+0.7
3,434,988	+				+0.6
3,434,988	+				-0.6
3,434,994	-				+0.6
3,434,996	-				-0.2
3,434,996	-				+1.0
3,434,998	-				+0.7
3,434,999	+				-1.8
3,435,005	+				-0.4
3,435,005	+				+0.4
3,435,005	+				-0.6
3,435,005	+				+0.7
3,435,005	+				+0.6
3,435,005	+				+0.2
3,435,005	+				-0.7
3,435,005	+				+0.1
3,435,005	+				+1.6
3,435,005	+				+1.1
3,435,005	+				-1.0
3,435,007	-				+0.6
3,435,013	-				-0.6
3,435,013	-				+0.3
3,435,013	-				-0.3
3,435,013	-				-0.2
3,435,037	+				-0.1
3,435,045	+				-0.3
3,435,050	+				+0.1
3,435,050	+				-0.4
3,435,050	+				+0.7
3,435,050	+				+0.4
3,435,050	+				-0.3
3,435,050	+				-0.4
3,435,058	-				+0.9
3,435,058	-				+1.7
3,435,058	-				+1.0
3,435,058	-				+1.7
3,435,058	-				+0.1
3,435,058	-				-1.8
3,435,058	-				-1.4
3,435,058	-				-0.3
3,435,063	-				-1.3
3,435,063	-				+0.1
3,435,079	+				+0.3
3,435,082	-				+0.7
3,435,116	-				+0.9
3,435,118	+				+2.4
3,435,121	+				+1.1
3,435,129	-				+0.2
3,435,158	+				+1.7
3,435,165	-				-0.6
3,435,166	-				+1.8
3,435,166	-				-0.2
3,435,193	+				+1.5
3,435,206	+		GFF3394	0.10	+0.8
3,435,206	+		GFF3394	0.10	-1.6
3,435,214	+		GFF3394	0.11	-0.1
3,435,220	+		GFF3394	0.12	+1.3
3,435,220	+		GFF3394	0.12	+0.1
3,435,222	-		GFF3394	0.12	+0.2
3,435,223	-		GFF3394	0.12	+0.6
3,435,225	+		GFF3394	0.13	-0.4
3,435,225	+		GFF3394	0.13	+0.9
3,435,225	+		GFF3394	0.13	+0.7
3,435,225	+		GFF3394	0.13	+0.6
3,435,225	+		GFF3394	0.13	+0.1
3,435,225	+		GFF3394	0.13	-0.1
3,435,228	-		GFF3394	0.13	+0.4
3,435,233	-		GFF3394	0.13	+0.1
3,435,233	-		GFF3394	0.13	+1.5
3,435,233	-		GFF3394	0.13	-0.4
3,435,233	-		GFF3394	0.13	+1.5
3,435,233	-		GFF3394	0.13	+1.0
3,435,238	+		GFF3394	0.14	-0.4
3,435,243	-		GFF3394	0.15	+1.0
3,435,248	-		GFF3394	0.15	+1.2
3,435,248	-		GFF3394	0.15	-0.6
3,435,262	+		GFF3394	0.17	+0.9
3,435,315	-		GFF3394	0.22	+0.2
3,435,319	+		GFF3394	0.23	+0.8
3,435,319	+		GFF3394	0.23	-0.6
3,435,397	+		GFF3394	0.31	+0.8
3,435,404	+		GFF3394	0.32	+0.1
3,435,404	+		GFF3394	0.32	+0.4
3,435,405	-		GFF3394	0.32	+1.7
3,435,419	+		GFF3394	0.34	+0.4
3,435,419	+		GFF3394	0.34	-0.1
3,435,427	-		GFF3394	0.35	+0.4
3,435,432	+		GFF3394	0.35	+1.1
3,435,438	-		GFF3394	0.36	+0.2
3,435,446	+		GFF3394	0.37	+0.7
3,435,448	-		GFF3394	0.37	+0.1
3,435,464	+		GFF3394	0.39	+0.6
3,435,464	-		GFF3394	0.39	-1.7
3,435,470	+		GFF3394	0.39	+0.4
3,435,471	+		GFF3394	0.40	+0.2
3,435,478	-		GFF3394	0.40	+0.7
3,435,478	-		GFF3394	0.40	+1.3
3,435,479	-		GFF3394	0.40	+1.7
3,435,495	+		GFF3394	0.42	-0.2
3,435,503	-		GFF3394	0.43	+0.9
3,435,518	-		GFF3394	0.45	+1.2
3,435,547	+		GFF3394	0.48	+0.9
3,435,673	+		GFF3394	0.62	+1.3
3,435,679	+		GFF3394	0.62	+0.1
3,435,679	+		GFF3394	0.62	+1.0
3,435,679	+		GFF3394	0.62	+0.9
3,435,679	+		GFF3394	0.62	+1.0
3,435,686	-		GFF3394	0.63	-0.1
3,435,686	-		GFF3394	0.63	+0.0
3,435,687	-		GFF3394	0.63	-1.9
3,435,687	-		GFF3394	0.63	-1.0
3,435,754	-		GFF3394	0.71	-1.9
3,435,817	+		GFF3394	0.78	-1.7
3,435,821	+		GFF3394	0.78	-0.6
3,435,840	+		GFF3394	0.80	+0.7
3,435,841	-		GFF3394	0.80	+2.1
3,435,848	-		GFF3394	0.81	-0.4
3,435,848	-		GFF3394	0.81	-0.4
3,435,855	-		GFF3394	0.82	+0.3
3,435,857	+		GFF3394	0.82	-0.8
3,435,860	-		GFF3394	0.82	+0.7
3,435,865	-		GFF3394	0.83	+0.8
3,435,865	-		GFF3394	0.83	+0.6
3,435,865	-		GFF3394	0.83	+0.2
3,435,865	-		GFF3394	0.83	+0.3
3,435,875	+		GFF3394	0.84	-0.8
3,435,883	-		GFF3394	0.85	+1.7
3,435,883	-		GFF3394	0.85	-0.4
3,435,919	+		GFF3394	0.89	+0.4
3,435,919	+		GFF3394	0.89	-0.2
3,435,927	-		GFF3394	0.90	+1.0
3,435,929	+				+0.1
3,435,929	+				-0.7
3,435,929	+				-1.3
3,435,929	+				-0.1
3,435,929	+				+0.7
3,435,937	-				-0.1
3,435,952	+				-0.7
3,435,962	+				-1.6
3,435,972	+				+1.2
3,436,033	+				+0.5
3,436,098	-				+1.1
3,436,100	+				+0.1
3,436,107	+				+0.3
3,436,107	+				-0.7
3,436,107	+				+0.7
3,436,107	+				-0.3
3,436,107	+				+0.4
3,436,107	+				+0.1
3,436,108	-				+0.5
3,436,108	-				+0.0
3,436,115	-				-0.2
3,436,115	-				-0.3
3,436,294	-				-1.8
3,436,326	-				-1.3
3,436,342	+				-0.2
3,436,342	-				-0.9
3,436,356	+				-0.7
3,436,366	+				+0.5
3,436,395	+				+1.5
3,436,395	+				+0.3
3,436,395	+				+1.0
3,436,396	+				+0.5
3,436,396	-				+0.1
3,436,403	-				+0.1
3,436,404	-				-0.5
3,436,413	+				+0.7
3,436,414	+				+0.3
3,436,414	+				+1.6
3,436,416	-				+0.3
3,436,435	+				-0.9
3,436,435	+				+0.1
3,436,435	+				+0.8
3,436,435	+				+0.5
3,436,436	+				+0.8
3,436,443	-				+0.5
3,436,443	-				-0.6
3,436,450	+				+0.5
3,436,452	+				-0.4
3,436,453	-				+0.4
3,436,458	-				-1.9
3,436,468	+				+1.5
3,436,476	-				-2.4
3,436,478	+				+2.3
3,436,487	+				+0.7
3,436,514	+				+0.1
3,436,514	+				+0.7
3,436,523	+				+0.2
3,436,533	+				+0.5
3,436,533	+				-1.4
3,436,533	+				+1.0
3,436,533	+				+1.4
3,436,541	-				+1.4
3,436,541	-				+0.7
3,436,541	-				+0.3
3,436,541	-				-1.5
3,436,547	-				-1.4
3,436,547	-				+0.6
3,436,547	-				+0.9
3,436,571	+				-0.6
3,436,571	+				+0.7
3,436,571	+				+0.9
3,436,574	-		GFF3395	0.10	+1.0
3,436,581	+		GFF3395	0.10	+1.6
3,436,581	-		GFF3395	0.10	+0.1
3,436,589	-		GFF3395	0.11	-1.7
3,436,589	-		GFF3395	0.11	-0.6
3,436,623	+		GFF3395	0.12	+0.1
3,436,623	+		GFF3395	0.12	-0.3
3,436,631	-		GFF3395	0.12	+0.4
3,436,646	-		GFF3395	0.13	+0.9
3,436,651	+		GFF3395	0.13	+0.7
3,436,657	+		GFF3395	0.13	+0.3
3,436,676	+		GFF3395	0.14	+1.2
3,436,676	+		GFF3395	0.14	-1.3
3,436,684	-		GFF3395	0.15	+1.5
3,436,689	-		GFF3395	0.15	+0.0
3,436,695	+		GFF3395	0.15	+0.1
3,436,697	+		GFF3395	0.15	+0.7
3,436,703	-		GFF3395	0.15	+0.9
3,436,705	+		GFF3395	0.15	+0.3
3,436,712	+		GFF3395	0.16	+0.7
3,436,712	+		GFF3395	0.16	+0.4
3,436,712	+		GFF3395	0.16	-0.9
3,436,712	+		GFF3395	0.16	-0.4
3,436,713	-		GFF3395	0.16	+0.0
3,436,713	-		GFF3395	0.16	+0.1
3,436,713	-		GFF3395	0.16	+0.8
3,436,720	-		GFF3395	0.16	+0.2
3,436,723	+		GFF3395	0.16	+0.5
3,436,747	+		GFF3395	0.17	-0.1
3,436,757	+		GFF3395	0.18	+1.6
3,436,757	+		GFF3395	0.18	+0.1
3,436,765	-		GFF3395	0.18	-0.4
3,436,765	-		GFF3395	0.18	+0.6
3,436,797	+		GFF3395	0.19	-0.2
3,436,829	+		GFF3395	0.21	-0.7
3,436,829	+		GFF3395	0.21	+1.7
3,436,860	-		GFF3395	0.22	+0.9
3,436,862	+		GFF3395	0.22	+0.1
3,436,898	+		GFF3395	0.23	-0.2
3,436,904	-		GFF3395	0.24	+1.6
3,436,949	-		GFF3395	0.25	+0.3
3,436,949	-		GFF3395	0.25	+1.1
3,436,972	-		GFF3395	0.26	+0.6
3,436,992	+		GFF3395	0.27	-1.9
3,436,992	+		GFF3395	0.27	-0.4
3,436,997	+		GFF3395	0.27	+0.3
3,436,997	+		GFF3395	0.27	+0.4
3,437,005	-		GFF3395	0.28	+0.1
3,437,015	-		GFF3395	0.28	+1.3
3,437,017	+		GFF3395	0.28	-2.4