Strain Fitness in Sphingobium sp. HT1-2 around GFF3388

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,427,414	+		GFF3387	0.17	+0.0
3,427,414	+		GFF3387	0.17	-0.9
3,427,419	+		GFF3387	0.17	-0.9
3,427,419	+		GFF3387	0.17	+0.3
3,427,419	+		GFF3387	0.17	-0.4
3,427,422	-		GFF3387	0.17	+0.4
3,427,422	-		GFF3387	0.17	-0.9
3,427,424	+		GFF3387	0.17	-0.3
3,427,424	+		GFF3387	0.17	+1.6
3,427,424	+		GFF3387	0.17	-0.1
3,427,424	+		GFF3387	0.17	+0.1
3,427,424	+		GFF3387	0.17	-1.1
3,427,424	+		GFF3387	0.17	+1.6
3,427,424	+		GFF3387	0.17	+1.1
3,427,424	+		GFF3387	0.17	+1.2
3,427,424	+		GFF3387	0.17	-2.2
3,427,424	+		GFF3387	0.17	+1.0
3,427,424	+		GFF3387	0.17	-0.1
3,427,424	+		GFF3387	0.17	+1.1
3,427,424	+		GFF3387	0.17	+0.0
3,427,424	+		GFF3387	0.17	-0.6
3,427,424	+		GFF3387	0.17	-0.1
3,427,424	+		GFF3387	0.17	+0.9
3,427,424	+		GFF3387	0.17	+0.7
3,427,424	+		GFF3387	0.17	-1.9
3,427,427	-		GFF3387	0.18	-0.2
3,427,429	+		GFF3387	0.18	+1.1
3,427,429	+		GFF3387	0.18	+0.7
3,427,432	-		GFF3387	0.18	+1.5
3,427,432	-		GFF3387	0.18	+0.6
3,427,432	-		GFF3387	0.18	+0.5
3,427,432	-		GFF3387	0.18	+0.4
3,427,432	-		GFF3387	0.18	+1.5
3,427,432	-		GFF3387	0.18	-0.5
3,427,432	-		GFF3387	0.18	+0.1
3,427,432	-		GFF3387	0.18	+0.8
3,427,432	-		GFF3387	0.18	+1.4
3,427,432	-		GFF3387	0.18	+0.4
3,427,432	-		GFF3387	0.18	+0.1
3,427,432	-		GFF3387	0.18	+1.1
3,427,432	-		GFF3387	0.18	-2.0
3,427,432	-		GFF3387	0.18	-0.1
3,427,432	-		GFF3387	0.18	+0.1
3,427,432	-		GFF3387	0.18	-0.7
3,427,432	-		GFF3387	0.18	+0.8
3,427,432	-		GFF3387	0.18	+2.0
3,427,432	-		GFF3387	0.18	+0.9
3,427,432	-		GFF3387	0.18	+0.3
3,427,432	-		GFF3387	0.18	+0.7
3,427,437	-		GFF3387	0.19	+0.6
3,427,437	-		GFF3387	0.19	-0.2
3,427,450	+		GFF3387	0.20	-0.1
3,427,460	-		GFF3387	0.21	-0.5
3,427,471	+		GFF3387	0.22	+0.1
3,427,476	+		GFF3387	0.22	-0.2
3,427,476	+		GFF3387	0.22	+0.3
3,427,476	+		GFF3387	0.22	+0.7
3,427,476	+		GFF3387	0.22	+0.4
3,427,476	+		GFF3387	0.22	+0.6
3,427,476	+		GFF3387	0.22	+0.0
3,427,476	+		GFF3387	0.22	+1.0
3,427,476	+		GFF3387	0.22	+0.4
3,427,476	+		GFF3387	0.22	+1.5
3,427,476	+		GFF3387	0.22	+1.1
3,427,476	+		GFF3387	0.22	-0.2
3,427,476	+		GFF3387	0.22	-1.8
3,427,476	+		GFF3387	0.22	+0.8
3,427,476	+		GFF3387	0.22	+0.5
3,427,484	-		GFF3387	0.23	+0.9
3,427,484	-		GFF3387	0.23	+0.3
3,427,484	-		GFF3387	0.23	-0.4
3,427,484	-		GFF3387	0.23	+1.9
3,427,484	-		GFF3387	0.23	+0.3
3,427,484	-		GFF3387	0.23	+1.1
3,427,484	-		GFF3387	0.23	+0.1
3,427,484	-		GFF3387	0.23	+0.2
3,427,484	-		GFF3387	0.23	-0.1
3,427,501	-		GFF3387	0.25	-0.9
3,427,501	-		GFF3387	0.25	-0.1
3,427,506	+		GFF3387	0.25	-0.7
3,427,506	+		GFF3387	0.25	+0.7
3,427,508	+		GFF3387	0.25	+1.0
3,427,509	-		GFF3387	0.25	-1.4
3,427,514	-		GFF3387	0.26	+0.2
3,427,559	+		GFF3387	0.30	-1.0
3,427,559	+		GFF3387	0.30	+0.9
3,427,559	+		GFF3387	0.30	+0.6
3,427,559	+		GFF3387	0.30	-1.2
3,427,561	+		GFF3387	0.30	+0.6
3,427,561	+		GFF3387	0.30	+1.7
3,427,561	+		GFF3387	0.30	+0.5
3,427,561	+		GFF3387	0.30	-0.7
3,427,561	+		GFF3387	0.30	+0.7
3,427,561	+		GFF3387	0.30	+0.1
3,427,561	+		GFF3387	0.30	+0.5
3,427,561	+		GFF3387	0.30	+1.5
3,427,561	+		GFF3387	0.30	+0.3
3,427,561	+		GFF3387	0.30	+0.4
3,427,561	+		GFF3387	0.30	-0.9
3,427,561	+		GFF3387	0.30	+0.6
3,427,561	+		GFF3387	0.30	+1.0
3,427,562	-		GFF3387	0.30	-0.6
3,427,569	-		GFF3387	0.31	-0.5
3,427,569	-		GFF3387	0.31	-1.8
3,427,569	-		GFF3387	0.31	+0.1
3,427,569	-		GFF3387	0.31	+0.3
3,427,569	-		GFF3387	0.31	-0.1
3,427,569	-		GFF3387	0.31	+0.8
3,427,569	-		GFF3387	0.31	-0.2
3,427,569	-		GFF3387	0.31	+0.8
3,427,569	-		GFF3387	0.31	+1.9
3,427,569	-		GFF3387	0.31	+1.7
3,427,569	-		GFF3387	0.31	+0.3
3,427,569	-		GFF3387	0.31	+0.5
3,427,569	-		GFF3387	0.31	-0.4
3,427,578	+		GFF3387	0.32	-0.0
3,427,583	+		GFF3387	0.32	+1.1
3,427,583	+		GFF3387	0.32	+2.0
3,427,617	+		GFF3387	0.35	+1.1
3,427,625	-		GFF3387	0.36	+0.2
3,427,646	+		GFF3387	0.38	+0.4
3,427,658	+		GFF3387	0.39	-0.9
3,427,658	+		GFF3387	0.39	+1.3
3,427,661	-		GFF3387	0.39	+0.8
3,427,677	-		GFF3387	0.41	-1.1
3,427,698	+		GFF3387	0.43	+1.1
3,427,700	+		GFF3387	0.43	-0.4
3,427,743	-		GFF3387	0.47	+0.1
3,427,807	+		GFF3387	0.53	-0.3
3,427,815	+		GFF3387	0.54	+0.3
3,427,832	-		GFF3387	0.55	+1.8
3,427,832	-		GFF3387	0.55	+0.1
3,427,869	-		GFF3387	0.59	-0.1
3,427,898	+		GFF3387	0.61	+1.0
3,427,905	-		GFF3387	0.62	-0.3
3,427,917	-		GFF3387	0.63	+0.2
3,427,943	+		GFF3387	0.66	-0.7
3,427,943	+		GFF3387	0.66	+0.6
3,427,945	+		GFF3387	0.66	+0.8
3,427,945	-		GFF3387	0.66	+1.5
3,427,945	-		GFF3387	0.66	-0.3
3,427,963	-		GFF3387	0.67	+0.4
3,427,987	+		GFF3387	0.70	+2.6
3,427,995	+		GFF3387	0.70	+1.5
3,427,995	+		GFF3387	0.70	+0.8
3,427,995	-		GFF3387	0.70	+1.0
3,428,003	-		GFF3387	0.71	+0.4
3,428,020	+		GFF3387	0.73	+1.7
3,428,020	+		GFF3387	0.73	-0.6
3,428,033	-		GFF3387	0.74	-0.6
3,428,041	+		GFF3387	0.75	+0.6
3,428,048	+		GFF3387	0.75	-0.0
3,428,056	-		GFF3387	0.76	-0.4
3,428,056	-		GFF3387	0.76	-1.9
3,428,102	-		GFF3387	0.80	+0.6
3,428,159	+		GFF3387	0.86	-0.2
3,428,167	-		GFF3387	0.86	+0.1
3,428,167	-		GFF3387	0.86	+1.0
3,428,167	-		GFF3387	0.86	+0.4
3,428,167	-		GFF3387	0.86	+0.1
3,428,181	+		GFF3387	0.88	-0.2
3,428,181	+		GFF3387	0.88	+1.5
3,428,189	-		GFF3387	0.88	-1.2
3,428,189	-		GFF3387	0.88	+2.1
3,428,198	+		GFF3387	0.89	-0.8
3,428,219	-				-0.2
3,428,236	+				-0.7
3,428,298	+				+0.6
3,428,306	-				+0.9
3,428,307	-				-0.2
3,428,326	-				+0.6
3,428,336	-				+0.6
3,428,366	+				-1.6
3,428,366	+				+0.3
3,428,366	+				+1.0
3,428,366	+				-0.9
3,428,366	+				-0.2
3,428,366	+				+1.1
3,428,366	+				-0.6
3,428,366	+				+1.3
3,428,366	+				-0.6
3,428,366	+				-1.4
3,428,366	+				+0.3
3,428,366	+				+1.0
3,428,366	+				+0.8
3,428,366	+				-0.4
3,428,366	+				+0.3
3,428,366	+				+1.5
3,428,366	+				-1.1
3,428,366	+				-0.6
3,428,366	+				-1.3
3,428,366	+				+0.3
3,428,366	+				-0.9
3,428,366	+				+1.1
3,428,366	+				+0.6
3,428,366	+				-1.3
3,428,366	+				+0.4
3,428,366	+				-0.6
3,428,366	+				+1.4
3,428,366	+				-0.2
3,428,366	+				-0.6
3,428,366	+				+0.1
3,428,366	+				-0.4
3,428,366	+				+0.6
3,428,366	+				-0.4
3,428,366	+				+0.6
3,428,366	+				-1.9
3,428,366	+				+1.6
3,428,366	+				-1.3
3,428,366	+				+0.7
3,428,366	+				-0.7
3,428,369	-				+0.9
3,428,374	-				+1.3
3,428,374	-				+1.5
3,428,374	-				+0.2
3,428,374	-				+2.1
3,428,374	-				+1.0
3,428,374	-				-0.5
3,428,374	-				+0.7
3,428,374	-				+0.4
3,428,374	-				-1.2
3,428,374	-				-1.4
3,428,374	-				-0.9
3,428,374	-				-0.9
3,428,374	-				+0.5
3,428,374	-				+0.8
3,428,374	-				-0.1
3,428,374	-				-1.2
3,428,374	-				+1.2
3,428,374	-				+0.3
3,428,374	-				-0.9
3,428,374	-				+1.1
3,428,374	-				+0.9
3,428,374	-				+0.8
3,428,374	-				-0.1
3,428,374	-				-2.8
3,428,374	-				+0.1
3,428,374	-				+0.3
3,428,374	-				+0.0
3,428,374	-				+1.1
3,428,374	-				+0.3
3,428,374	-				+0.9
3,428,374	-				+1.7
3,428,374	-				+0.7
3,428,376	+				-0.4
3,428,380	-				-0.8
3,428,384	-				+0.9
3,428,386	+				-0.9
3,428,449	+				-0.4
3,428,457	-		GFF3388	0.10	+0.8
3,428,474	-		GFF3388	0.13	+0.7
3,428,474	-		GFF3388	0.13	+0.1
3,428,482	+		GFF3388	0.15	+0.6
3,428,495	-		GFF3388	0.17	+1.1
3,428,524	+		GFF3388	0.22	-0.4
3,428,584	+		GFF3388	0.33	+0.6
3,428,601	-		GFF3388	0.36	+1.6
3,428,631	+		GFF3388	0.41	-0.1
3,428,632	-		GFF3388	0.42	-1.0
3,428,638	+		GFF3388	0.43	+0.3
3,428,651	-		GFF3388	0.45	+1.2
3,428,682	-		GFF3388	0.50	+0.6
3,428,731	-		GFF3388	0.59	+0.5
3,428,731	-		GFF3388	0.59	+1.0
3,428,780	-		GFF3388	0.68	+1.5
3,428,790	+		GFF3388	0.70	-0.4
3,428,790	+		GFF3388	0.70	+0.1
3,428,790	+		GFF3388	0.70	+0.0
3,428,790	+		GFF3388	0.70	-1.4
3,428,790	+		GFF3388	0.70	-0.4
3,428,798	-		GFF3388	0.71	+1.0
3,428,798	-		GFF3388	0.71	+1.3
3,428,798	-		GFF3388	0.71	+0.1
3,428,845	-		GFF3388	0.80	+0.9
3,428,851	-		GFF3388	0.81	+1.4
3,428,851	-		GFF3388	0.81	-0.4
3,428,919	+				+0.8
3,428,922	+				+0.2
3,428,927	+				-0.5
3,428,933	+				+1.1
3,428,941	-				+0.0
3,428,992	+				-0.4
3,428,992	+				-0.3
3,429,028	+				-0.6
3,429,028	+				+0.6
3,429,028	+				+0.8
3,429,028	+				+1.7
3,429,028	+				-1.4
3,429,034	+				+0.7
3,429,036	-				-1.6
3,429,036	-				-0.5
3,429,036	-				-0.2
3,429,041	-				+1.1
3,429,041	-				+1.6
3,429,041	-				+0.9
3,429,041	-				-0.3
3,429,051	-				+1.9
3,429,061	+				+1.4
3,429,076	-				+0.8
3,429,080	-				+0.7
3,429,085	-				-0.8
3,429,085	-				+0.8
3,429,087	-				+0.3
3,429,134	+				-0.4
3,429,148	+				-0.2
3,429,194	+		GFF3389	0.16	+1.1
3,429,225	+		GFF3389	0.23	-1.3
3,429,233	-		GFF3389	0.25	+0.8
3,429,263	+		GFF3389	0.32	+0.2
3,429,263	+		GFF3389	0.32	-1.7
3,429,264	+		GFF3389	0.32	-1.3
3,429,269	+		GFF3389	0.34	-2.2
3,429,271	-		GFF3389	0.34	-0.1
3,429,272	-		GFF3389	0.34	-0.2
3,429,284	-		GFF3389	0.37	+0.2
3,429,289	+		GFF3389	0.38	+0.4
3,429,294	+		GFF3389	0.39	-1.9
3,429,294	+		GFF3389	0.39	-0.0
3,429,294	-		GFF3389	0.39	+1.7
3,429,295	-		GFF3389	0.40	+0.3
3,429,304	+		GFF3389	0.42	+0.1
3,429,304	+		GFF3389	0.42	+0.9
3,429,304	+		GFF3389	0.42	+0.8
3,429,304	+		GFF3389	0.42	-1.4
3,429,304	+		GFF3389	0.42	+0.3
3,429,304	+		GFF3389	0.42	-0.1
3,429,304	+		GFF3389	0.42	-0.7
3,429,304	+		GFF3389	0.42	-0.4
3,429,304	+		GFF3389	0.42	+0.1
3,429,304	+		GFF3389	0.42	-1.3
3,429,304	+		GFF3389	0.42	+0.3
3,429,304	+		GFF3389	0.42	+0.5
3,429,312	-		GFF3389	0.44	+0.6
3,429,312	-		GFF3389	0.44	-0.1
3,429,312	-		GFF3389	0.44	-1.7
3,429,312	-		GFF3389	0.44	+1.2
3,429,312	-		GFF3389	0.44	+2.0
3,429,312	-		GFF3389	0.44	+0.3
3,429,312	-		GFF3389	0.44	+1.0
3,429,312	-		GFF3389	0.44	+0.1
3,429,333	+		GFF3389	0.49	-0.2
3,429,360	+		GFF3389	0.55	-0.6
3,429,364	-		GFF3389	0.56	+0.3
3,429,368	-		GFF3389	0.57	+0.8
3,429,368	-		GFF3389	0.57	+1.3
3,429,381	+		GFF3389	0.60	+1.4
3,429,387	+		GFF3389	0.61	-0.8
3,429,395	+		GFF3389	0.63	+0.6
3,429,395	+		GFF3389	0.63	-0.4
3,429,395	-		GFF3389	0.63	+1.6
3,429,402	-		GFF3389	0.65	+0.0
3,429,408	-		GFF3389	0.66	+0.6
3,429,422	+		GFF3389	0.70	-0.3
3,429,429	+		GFF3389	0.71	+0.6
3,429,445	-		GFF3389	0.75	+0.9
3,429,466	-		GFF3389	0.80	+0.9
3,429,468	+		GFF3389	0.81	-0.5
3,429,476	-		GFF3389	0.83	+1.4
3,429,516	+				+2.1
3,429,530	+				+0.0
3,429,538	-				+0.3
3,429,567	-				-0.6
3,429,590	-				+1.0
3,429,625	-				-0.4
3,429,636	-				+0.6
3,429,636	-				-0.9
3,429,636	-				+0.3
3,429,636	-				+2.4
3,429,644	-				-0.1
3,429,650	+				+0.3
3,429,651	+				+0.8
3,429,651	+				+1.3
3,429,651	+				+0.9
3,429,652	+				-1.4
3,429,670	+		GFF3390	0.11	+1.2
3,429,683	-		GFF3390	0.14	+0.0
3,429,693	+		GFF3390	0.17	-0.4
3,429,715	-		GFF3390	0.22	+0.7
3,429,720	-		GFF3390	0.24	+0.6
3,429,722	+		GFF3390	0.24	+0.7
3,429,727	+		GFF3390	0.26	-0.3
3,429,735	-		GFF3390	0.28	+0.1
3,429,749	+		GFF3390	0.31	-0.6
3,429,754	+		GFF3390	0.32	+0.8
3,429,754	+		GFF3390	0.32	+1.1
3,429,839	+		GFF3390	0.54	-0.8
3,429,848	-		GFF3390	0.56	-0.3
3,429,875	-		GFF3390	0.63	-0.1
3,429,876	+		GFF3390	0.63	+0.1
3,429,913	-		GFF3390	0.72	-1.3
3,429,918	+		GFF3390	0.74	-0.1
3,429,931	+		GFF3390	0.77	+0.3
3,429,939	+		GFF3390	0.79	+0.7
3,429,940	+		GFF3390	0.79	+0.1
3,429,940	-		GFF3390	0.79	+1.5
3,429,945	+		GFF3390	0.81	+0.1