Strain Fitness in Sphingobium sp. HT1-2 around GFF3387

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,426,245	+		GFF3385	0.89	-0.6
3,426,258	+		GFF3385	0.90	+0.1
3,426,261	+		GFF3385	0.90	-1.0
3,426,262	+		GFF3385	0.90	-0.1
3,426,266	+				+0.1
3,426,266	+				+0.2
3,426,266	+				+1.0
3,426,266	+				-0.6
3,426,266	+				+0.1
3,426,266	+				+0.0
3,426,266	+				+0.1
3,426,266	+				+0.8
3,426,266	+				+1.3
3,426,274	-				+0.3
3,426,274	-				+0.3
3,426,274	-				+1.0
3,426,274	-				+0.7
3,426,274	-				+1.1
3,426,274	-				+0.4
3,426,274	-				-0.1
3,426,283	-				-0.2
3,426,293	-				-1.4
3,426,309	+				+1.8
3,426,330	+				+0.9
3,426,360	+				+0.8
3,426,371	+				+0.2
3,426,371	+				+0.6
3,426,379	-				+1.0
3,426,379	-				+0.1
3,426,379	-				+0.1
3,426,381	-				-0.4
3,426,398	+				+0.1
3,426,420	+				+0.9
3,426,443	+				+0.1
3,426,462	-				+0.9
3,426,502	-		GFF3386	0.12	+0.9
3,426,529	+		GFF3386	0.16	+0.6
3,426,529	+		GFF3386	0.16	+1.7
3,426,529	+		GFF3386	0.16	+1.6
3,426,564	+		GFF3386	0.20	-1.3
3,426,569	+		GFF3386	0.21	-0.4
3,426,569	+		GFF3386	0.21	-2.0
3,426,577	-		GFF3386	0.22	+0.4
3,426,594	-		GFF3386	0.24	-0.2
3,426,640	+		GFF3386	0.31	-0.2
3,426,690	+		GFF3386	0.38	+0.9
3,426,723	-		GFF3386	0.42	+0.1
3,426,739	+		GFF3386	0.44	+0.2
3,426,739	+		GFF3386	0.44	-0.8
3,426,744	+		GFF3386	0.45	+0.6
3,426,747	-		GFF3386	0.45	+1.3
3,426,747	-		GFF3386	0.45	+0.3
3,426,752	-		GFF3386	0.46	+0.7
3,426,755	+		GFF3386	0.46	+1.5
3,426,755	+		GFF3386	0.46	+0.3
3,426,755	+		GFF3386	0.46	+0.1
3,426,768	+		GFF3386	0.48	+1.0
3,426,772	-		GFF3386	0.49	+1.7
3,426,776	-		GFF3386	0.49	+0.2
3,426,801	+		GFF3386	0.53	+1.4
3,426,809	-		GFF3386	0.54	+0.0
3,426,814	+		GFF3386	0.55	-0.6
3,426,883	+		GFF3386	0.64	+0.1
3,426,894	-		GFF3386	0.65	+0.1
3,426,914	+		GFF3386	0.68	-1.3
3,426,915	+		GFF3386	0.68	+1.2
3,426,956	+		GFF3386	0.74	+0.7
3,426,957	+		GFF3386	0.74	-0.7
3,426,957	-		GFF3386	0.74	+1.0
3,426,959	-		GFF3386	0.74	+0.2
3,426,962	-		GFF3386	0.75	-1.8
3,426,965	-		GFF3386	0.75	+0.6
3,426,969	+		GFF3386	0.76	-1.3
3,426,973	+		GFF3386	0.76	+0.1
3,426,973	+		GFF3386	0.76	+1.0
3,426,973	+		GFF3386	0.76	+0.5
3,426,973	+		GFF3386	0.76	+0.1
3,426,973	+		GFF3386	0.76	+0.9
3,426,976	-		GFF3386	0.77	-2.0
3,426,981	-		GFF3386	0.77	+0.5
3,426,981	-		GFF3386	0.77	+0.3
3,426,981	-		GFF3386	0.77	+0.6
3,427,014	+		GFF3386	0.82	-0.1
3,427,022	-		GFF3386	0.83	-0.2
3,427,024	-		GFF3386	0.83	+0.7
3,427,042	+		GFF3386	0.86	-1.2
3,427,042	+		GFF3386	0.86	+0.7
3,427,042	+		GFF3386	0.86	-1.4
3,427,042	+		GFF3386	0.86	+0.1
3,427,050	-		GFF3386	0.87	+0.5
3,427,050	-		GFF3386	0.87	+0.8
3,427,069	+		GFF3386	0.89	+1.3
3,427,094	+				+0.3
3,427,110	-				-0.9
3,427,113	+				+0.3
3,427,113	+				+1.0
3,427,113	+				+1.7
3,427,113	+				+1.0
3,427,121	-				+0.9
3,427,121	-				-0.2
3,427,126	+				+0.3
3,427,149	-				+1.5
3,427,149	-				-0.6
3,427,153	-				-2.1
3,427,161	+				-0.4
3,427,161	+				-0.3
3,427,161	+				+1.3
3,427,161	+				+0.1
3,427,167	+				-0.3
3,427,168	+				-0.7
3,427,169	-				+1.1
3,427,169	-				+0.4
3,427,169	-				+0.2
3,427,169	-				-1.2
3,427,169	-				+0.9
3,427,173	+				+1.6
3,427,176	-				-0.2
3,427,183	+				+1.5
3,427,183	-				-0.3
3,427,183	-				-0.4
3,427,191	-				+0.6
3,427,208	+				+0.4
3,427,216	-				+1.0
3,427,216	-				-0.4
3,427,221	-				-1.0
3,427,261	+				-0.4
3,427,261	+				+0.0
3,427,261	+				+0.3
3,427,261	+				+0.1
3,427,261	+				-0.7
3,427,269	-				+0.8
3,427,269	-				-0.1
3,427,269	-				+0.9
3,427,269	-				+2.1
3,427,297	-				-0.5
3,427,307	+				-0.1
3,427,315	-				-0.4
3,427,315	-				-1.2
3,427,325	+				-0.7
3,427,333	-				+0.7
3,427,359	+		GFF3387	0.11	+1.1
3,427,359	+		GFF3387	0.11	+0.8
3,427,359	+		GFF3387	0.11	+0.5
3,427,359	+		GFF3387	0.11	+0.1
3,427,359	+		GFF3387	0.11	-0.4
3,427,359	+		GFF3387	0.11	-0.6
3,427,359	+		GFF3387	0.11	+0.2
3,427,359	+		GFF3387	0.11	+1.8
3,427,359	+		GFF3387	0.11	+1.1
3,427,359	+		GFF3387	0.11	+0.1
3,427,359	+		GFF3387	0.11	+0.7
3,427,359	+		GFF3387	0.11	+1.3
3,427,359	+		GFF3387	0.11	+1.1
3,427,359	+		GFF3387	0.11	+1.4
3,427,359	+		GFF3387	0.11	+1.3
3,427,359	+		GFF3387	0.11	-1.4
3,427,359	+		GFF3387	0.11	-0.2
3,427,359	+		GFF3387	0.11	-0.3
3,427,364	+		GFF3387	0.12	+0.9
3,427,364	+		GFF3387	0.12	+0.8
3,427,364	+		GFF3387	0.12	-1.3
3,427,364	+		GFF3387	0.12	-0.3
3,427,366	+		GFF3387	0.12	+0.2
3,427,366	+		GFF3387	0.12	+1.3
3,427,369	+		GFF3387	0.12	-0.6
3,427,369	+		GFF3387	0.12	-2.2
3,427,369	+		GFF3387	0.12	-1.2
3,427,369	+		GFF3387	0.12	+0.0
3,427,369	+		GFF3387	0.12	+1.0
3,427,369	+		GFF3387	0.12	+0.2
3,427,369	+		GFF3387	0.12	+0.2
3,427,369	+		GFF3387	0.12	-2.3
3,427,369	+		GFF3387	0.12	+1.5
3,427,369	+		GFF3387	0.12	-0.2
3,427,369	+		GFF3387	0.12	-0.3
3,427,369	+		GFF3387	0.12	+0.7
3,427,377	+		GFF3387	0.13	+0.0
3,427,414	+		GFF3387	0.17	+0.0
3,427,414	+		GFF3387	0.17	-0.9
3,427,419	+		GFF3387	0.17	-0.9
3,427,419	+		GFF3387	0.17	+0.3
3,427,419	+		GFF3387	0.17	-0.4
3,427,422	-		GFF3387	0.17	+0.4
3,427,422	-		GFF3387	0.17	-0.9
3,427,424	+		GFF3387	0.17	-0.3
3,427,424	+		GFF3387	0.17	+1.6
3,427,424	+		GFF3387	0.17	-0.1
3,427,424	+		GFF3387	0.17	+0.1
3,427,424	+		GFF3387	0.17	-1.1
3,427,424	+		GFF3387	0.17	+1.6
3,427,424	+		GFF3387	0.17	+1.1
3,427,424	+		GFF3387	0.17	+1.2
3,427,424	+		GFF3387	0.17	-2.2
3,427,424	+		GFF3387	0.17	+1.0
3,427,424	+		GFF3387	0.17	-0.1
3,427,424	+		GFF3387	0.17	+1.1
3,427,424	+		GFF3387	0.17	+0.0
3,427,424	+		GFF3387	0.17	-0.6
3,427,424	+		GFF3387	0.17	-0.1
3,427,424	+		GFF3387	0.17	+0.9
3,427,424	+		GFF3387	0.17	+0.7
3,427,424	+		GFF3387	0.17	-1.9
3,427,427	-		GFF3387	0.18	-0.2
3,427,429	+		GFF3387	0.18	+1.1
3,427,429	+		GFF3387	0.18	+0.7
3,427,432	-		GFF3387	0.18	+1.5
3,427,432	-		GFF3387	0.18	+0.6
3,427,432	-		GFF3387	0.18	+0.5
3,427,432	-		GFF3387	0.18	+0.4
3,427,432	-		GFF3387	0.18	+1.5
3,427,432	-		GFF3387	0.18	-0.5
3,427,432	-		GFF3387	0.18	+0.1
3,427,432	-		GFF3387	0.18	+0.8
3,427,432	-		GFF3387	0.18	+1.4
3,427,432	-		GFF3387	0.18	+0.4
3,427,432	-		GFF3387	0.18	+0.1
3,427,432	-		GFF3387	0.18	+1.1
3,427,432	-		GFF3387	0.18	-2.0
3,427,432	-		GFF3387	0.18	-0.1
3,427,432	-		GFF3387	0.18	+0.1
3,427,432	-		GFF3387	0.18	-0.7
3,427,432	-		GFF3387	0.18	+0.8
3,427,432	-		GFF3387	0.18	+2.0
3,427,432	-		GFF3387	0.18	+0.9
3,427,432	-		GFF3387	0.18	+0.3
3,427,432	-		GFF3387	0.18	+0.7
3,427,437	-		GFF3387	0.19	+0.6
3,427,437	-		GFF3387	0.19	-0.2
3,427,450	+		GFF3387	0.20	-0.1
3,427,460	-		GFF3387	0.21	-0.5
3,427,471	+		GFF3387	0.22	+0.1
3,427,476	+		GFF3387	0.22	-0.2
3,427,476	+		GFF3387	0.22	+0.3
3,427,476	+		GFF3387	0.22	+0.7
3,427,476	+		GFF3387	0.22	+0.4
3,427,476	+		GFF3387	0.22	+0.6
3,427,476	+		GFF3387	0.22	+0.0
3,427,476	+		GFF3387	0.22	+1.0
3,427,476	+		GFF3387	0.22	+0.4
3,427,476	+		GFF3387	0.22	+1.5
3,427,476	+		GFF3387	0.22	+1.1
3,427,476	+		GFF3387	0.22	-0.2
3,427,476	+		GFF3387	0.22	-1.8
3,427,476	+		GFF3387	0.22	+0.8
3,427,476	+		GFF3387	0.22	+0.5
3,427,484	-		GFF3387	0.23	+0.9
3,427,484	-		GFF3387	0.23	+0.3
3,427,484	-		GFF3387	0.23	-0.4
3,427,484	-		GFF3387	0.23	+1.9
3,427,484	-		GFF3387	0.23	+0.3
3,427,484	-		GFF3387	0.23	+1.1
3,427,484	-		GFF3387	0.23	+0.1
3,427,484	-		GFF3387	0.23	+0.2
3,427,484	-		GFF3387	0.23	-0.1
3,427,501	-		GFF3387	0.25	-0.9
3,427,501	-		GFF3387	0.25	-0.1
3,427,506	+		GFF3387	0.25	-0.7
3,427,506	+		GFF3387	0.25	+0.7
3,427,508	+		GFF3387	0.25	+1.0
3,427,509	-		GFF3387	0.25	-1.4
3,427,514	-		GFF3387	0.26	+0.2
3,427,559	+		GFF3387	0.30	-1.0
3,427,559	+		GFF3387	0.30	+0.9
3,427,559	+		GFF3387	0.30	+0.6
3,427,559	+		GFF3387	0.30	-1.2
3,427,561	+		GFF3387	0.30	+0.6
3,427,561	+		GFF3387	0.30	+1.7
3,427,561	+		GFF3387	0.30	+0.5
3,427,561	+		GFF3387	0.30	-0.7
3,427,561	+		GFF3387	0.30	+0.7
3,427,561	+		GFF3387	0.30	+0.1
3,427,561	+		GFF3387	0.30	+0.5
3,427,561	+		GFF3387	0.30	+1.5
3,427,561	+		GFF3387	0.30	+0.3
3,427,561	+		GFF3387	0.30	+0.4
3,427,561	+		GFF3387	0.30	-0.9
3,427,561	+		GFF3387	0.30	+0.6
3,427,561	+		GFF3387	0.30	+1.0
3,427,562	-		GFF3387	0.30	-0.6
3,427,569	-		GFF3387	0.31	-0.5
3,427,569	-		GFF3387	0.31	-1.8
3,427,569	-		GFF3387	0.31	+0.1
3,427,569	-		GFF3387	0.31	+0.3
3,427,569	-		GFF3387	0.31	-0.1
3,427,569	-		GFF3387	0.31	+0.8
3,427,569	-		GFF3387	0.31	-0.2
3,427,569	-		GFF3387	0.31	+0.8
3,427,569	-		GFF3387	0.31	+1.9
3,427,569	-		GFF3387	0.31	+1.7
3,427,569	-		GFF3387	0.31	+0.3
3,427,569	-		GFF3387	0.31	+0.5
3,427,569	-		GFF3387	0.31	-0.4
3,427,578	+		GFF3387	0.32	-0.0
3,427,583	+		GFF3387	0.32	+1.1
3,427,583	+		GFF3387	0.32	+2.0
3,427,617	+		GFF3387	0.35	+1.1
3,427,625	-		GFF3387	0.36	+0.2
3,427,646	+		GFF3387	0.38	+0.4
3,427,658	+		GFF3387	0.39	-0.9
3,427,658	+		GFF3387	0.39	+1.3
3,427,661	-		GFF3387	0.39	+0.8
3,427,677	-		GFF3387	0.41	-1.1
3,427,698	+		GFF3387	0.43	+1.1
3,427,700	+		GFF3387	0.43	-0.4
3,427,743	-		GFF3387	0.47	+0.1
3,427,807	+		GFF3387	0.53	-0.3
3,427,815	+		GFF3387	0.54	+0.3
3,427,832	-		GFF3387	0.55	+1.8
3,427,832	-		GFF3387	0.55	+0.1
3,427,869	-		GFF3387	0.59	-0.1
3,427,898	+		GFF3387	0.61	+1.0
3,427,905	-		GFF3387	0.62	-0.3
3,427,917	-		GFF3387	0.63	+0.2
3,427,943	+		GFF3387	0.66	-0.7
3,427,943	+		GFF3387	0.66	+0.6
3,427,945	+		GFF3387	0.66	+0.8
3,427,945	-		GFF3387	0.66	+1.5
3,427,945	-		GFF3387	0.66	-0.3
3,427,963	-		GFF3387	0.67	+0.4
3,427,987	+		GFF3387	0.70	+2.6
3,427,995	+		GFF3387	0.70	+1.5
3,427,995	+		GFF3387	0.70	+0.8
3,427,995	-		GFF3387	0.70	+1.0
3,428,003	-		GFF3387	0.71	+0.4
3,428,020	+		GFF3387	0.73	+1.7
3,428,020	+		GFF3387	0.73	-0.6
3,428,033	-		GFF3387	0.74	-0.6
3,428,041	+		GFF3387	0.75	+0.6
3,428,048	+		GFF3387	0.75	-0.0
3,428,056	-		GFF3387	0.76	-0.4
3,428,056	-		GFF3387	0.76	-1.9
3,428,102	-		GFF3387	0.80	+0.6
3,428,159	+		GFF3387	0.86	-0.2
3,428,167	-		GFF3387	0.86	+0.1
3,428,167	-		GFF3387	0.86	+1.0
3,428,167	-		GFF3387	0.86	+0.4
3,428,167	-		GFF3387	0.86	+0.1
3,428,181	+		GFF3387	0.88	-0.2
3,428,181	+		GFF3387	0.88	+1.5
3,428,189	-		GFF3387	0.88	-1.2
3,428,189	-		GFF3387	0.88	+2.1
3,428,198	+		GFF3387	0.89	-0.8
3,428,219	-				-0.2
3,428,236	+				-0.7
3,428,298	+				+0.6
3,428,306	-				+0.9
3,428,307	-				-0.2
3,428,326	-				+0.6
3,428,336	-				+0.6
3,428,366	+				-1.6
3,428,366	+				+0.3
3,428,366	+				+1.0
3,428,366	+				-0.9
3,428,366	+				-0.2
3,428,366	+				+1.1
3,428,366	+				-0.6
3,428,366	+				+1.3
3,428,366	+				-0.6
3,428,366	+				-1.4
3,428,366	+				+0.3
3,428,366	+				+1.0
3,428,366	+				+0.8
3,428,366	+				-0.4
3,428,366	+				+0.3
3,428,366	+				+1.5
3,428,366	+				-1.1
3,428,366	+				-0.6
3,428,366	+				-1.3
3,428,366	+				+0.3
3,428,366	+				-0.9
3,428,366	+				+1.1
3,428,366	+				+0.6
3,428,366	+				-1.3
3,428,366	+				+0.4
3,428,366	+				-0.6
3,428,366	+				+1.4
3,428,366	+				-0.2
3,428,366	+				-0.6
3,428,366	+				+0.1
3,428,366	+				-0.4
3,428,366	+				+0.6
3,428,366	+				-0.4
3,428,366	+				+0.6
3,428,366	+				-1.9
3,428,366	+				+1.6
3,428,366	+				-1.3
3,428,366	+				+0.7
3,428,366	+				-0.7
3,428,369	-				+0.9
3,428,374	-				+1.3
3,428,374	-				+1.5
3,428,374	-				+0.2
3,428,374	-				+2.1
3,428,374	-				+1.0
3,428,374	-				-0.5
3,428,374	-				+0.7
3,428,374	-				+0.4
3,428,374	-				-1.2
3,428,374	-				-1.4
3,428,374	-				-0.9
3,428,374	-				-0.9
3,428,374	-				+0.5
3,428,374	-				+0.8
3,428,374	-				-0.1
3,428,374	-				-1.2
3,428,374	-				+1.2
3,428,374	-				+0.3
3,428,374	-				-0.9
3,428,374	-				+1.1
3,428,374	-				+0.9
3,428,374	-				+0.8
3,428,374	-				-0.1
3,428,374	-				-2.8
3,428,374	-				+0.1
3,428,374	-				+0.3
3,428,374	-				+0.0
3,428,374	-				+1.1
3,428,374	-				+0.3
3,428,374	-				+0.9
3,428,374	-				+1.7
3,428,374	-				+0.7
3,428,376	+				-0.4
3,428,380	-				-0.8
3,428,384	-				+0.9
3,428,386	+				-0.9
3,428,449	+				-0.4
3,428,457	-		GFF3388	0.10	+0.8
3,428,474	-		GFF3388	0.13	+0.7
3,428,474	-		GFF3388	0.13	+0.1
3,428,482	+		GFF3388	0.15	+0.6
3,428,495	-		GFF3388	0.17	+1.1
3,428,524	+		GFF3388	0.22	-0.4
3,428,584	+		GFF3388	0.33	+0.6
3,428,601	-		GFF3388	0.36	+1.6
3,428,631	+		GFF3388	0.41	-0.1
3,428,632	-		GFF3388	0.42	-1.0
3,428,638	+		GFF3388	0.43	+0.3
3,428,651	-		GFF3388	0.45	+1.2
3,428,682	-		GFF3388	0.50	+0.6
3,428,731	-		GFF3388	0.59	+0.5
3,428,731	-		GFF3388	0.59	+1.0
3,428,780	-		GFF3388	0.68	+1.5
3,428,790	+		GFF3388	0.70	-0.4
3,428,790	+		GFF3388	0.70	+0.1
3,428,790	+		GFF3388	0.70	+0.0
3,428,790	+		GFF3388	0.70	-1.4
3,428,790	+		GFF3388	0.70	-0.4
3,428,798	-		GFF3388	0.71	+1.0
3,428,798	-		GFF3388	0.71	+1.3
3,428,798	-		GFF3388	0.71	+0.1
3,428,845	-		GFF3388	0.80	+0.9
3,428,851	-		GFF3388	0.81	+1.4
3,428,851	-		GFF3388	0.81	-0.4
3,428,919	+				+0.8
3,428,922	+				+0.2
3,428,927	+				-0.5
3,428,933	+				+1.1
3,428,941	-				+0.0
3,428,992	+				-0.4
3,428,992	+				-0.3
3,429,028	+				-0.6
3,429,028	+				+0.6
3,429,028	+				+0.8
3,429,028	+				+1.7
3,429,028	+				-1.4
3,429,034	+				+0.7
3,429,036	-				-1.6
3,429,036	-				-0.5
3,429,036	-				-0.2
3,429,041	-				+1.1
3,429,041	-				+1.6
3,429,041	-				+0.9
3,429,041	-				-0.3
3,429,051	-				+1.9
3,429,061	+				+1.4
3,429,076	-				+0.8
3,429,080	-				+0.7
3,429,085	-				-0.8
3,429,085	-				+0.8
3,429,087	-				+0.3
3,429,134	+				-0.4
3,429,148	+				-0.2
3,429,194	+		GFF3389	0.16	+1.1
3,429,225	+		GFF3389	0.23	-1.3
3,429,233	-		GFF3389	0.25	+0.8
3,429,263	+		GFF3389	0.32	+0.2
3,429,263	+		GFF3389	0.32	-1.7
3,429,264	+		GFF3389	0.32	-1.3
3,429,269	+		GFF3389	0.34	-2.2
3,429,271	-		GFF3389	0.34	-0.1
3,429,272	-		GFF3389	0.34	-0.2
3,429,284	-		GFF3389	0.37	+0.2
3,429,289	+		GFF3389	0.38	+0.4
3,429,294	+		GFF3389	0.39	-1.9
3,429,294	+		GFF3389	0.39	-0.0
3,429,294	-		GFF3389	0.39	+1.7
3,429,295	-		GFF3389	0.40	+0.3
3,429,304	+		GFF3389	0.42	+0.1
3,429,304	+		GFF3389	0.42	+0.9
3,429,304	+		GFF3389	0.42	+0.8
3,429,304	+		GFF3389	0.42	-1.4
3,429,304	+		GFF3389	0.42	+0.3
3,429,304	+		GFF3389	0.42	-0.1
3,429,304	+		GFF3389	0.42	-0.7
3,429,304	+		GFF3389	0.42	-0.4
3,429,304	+		GFF3389	0.42	+0.1
3,429,304	+		GFF3389	0.42	-1.3
3,429,304	+		GFF3389	0.42	+0.3
3,429,304	+		GFF3389	0.42	+0.5
3,429,312	-		GFF3389	0.44	+0.6
3,429,312	-		GFF3389	0.44	-0.1
3,429,312	-		GFF3389	0.44	-1.7
3,429,312	-		GFF3389	0.44	+1.2
3,429,312	-		GFF3389	0.44	+2.0
3,429,312	-		GFF3389	0.44	+0.3
3,429,312	-		GFF3389	0.44	+1.0
3,429,312	-		GFF3389	0.44	+0.1