Strain Fitness in Sphingobium sp. HT1-2 around GFF3382

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,421,605	+		GFF3379	0.73	+0.7
3,421,609	+		GFF3379	0.74	-0.5
3,421,624	-		GFF3379	0.81	+0.1
3,421,664	-				-0.5
3,421,664	-				+0.2
3,421,665	+				-0.2
3,421,666	+				-2.0
3,421,666	+				-1.4
3,421,674	-				-1.7
3,421,674	-				-1.4
3,421,705	+				-0.1
3,421,710	+				+1.1
3,421,743	+				+0.2
3,421,757	-		GFF3380	0.12	-0.8
3,421,784	+		GFF3380	0.23	+0.8
3,421,784	+		GFF3380	0.23	+0.4
3,421,784	+		GFF3380	0.23	-0.0
3,421,792	-		GFF3380	0.27	-0.2
3,421,792	-		GFF3380	0.27	-1.2
3,421,800	-		GFF3380	0.30	+1.2
3,421,815	+		GFF3380	0.36	-2.1
3,421,815	+		GFF3380	0.36	-0.3
3,421,829	-		GFF3380	0.42	+0.3
3,421,829	-		GFF3380	0.42	-0.7
3,421,830	+		GFF3380	0.42	-1.7
3,421,837	-		GFF3380	0.45	+0.3
3,421,900	-		GFF3380	0.72	-0.1
3,421,915	+		GFF3380	0.78	-0.3
3,421,946	+				-1.7
3,421,964	-				+0.7
3,421,970	-				+0.2
3,421,984	-				+1.2
3,421,998	+				+0.7
3,421,998	+				+1.3
3,422,006	+				-0.0
3,422,006	-				+0.3
3,422,006	-				+0.3
3,422,006	-				+1.0
3,422,016	-				-0.1
3,422,016	-				+0.6
3,422,016	-				+1.0
3,422,017	+				+0.6
3,422,025	-				+1.0
3,422,025	-				+1.2
3,422,025	-				+0.5
3,422,025	-				+1.4
3,422,026	-				+0.6
3,422,031	+				+0.5
3,422,065	-				-0.2
3,422,135	+				-0.8
3,422,137	-				+2.1
3,422,147	+				+0.8
3,422,148	+				-0.6
3,422,169	+				+1.3
3,422,181	+				+0.8
3,422,181	+				+0.0
3,422,183	+				-0.7
3,422,189	-				-0.1
3,422,201	+				+0.8
3,422,201	+				+0.8
3,422,201	+				-0.1
3,422,206	+				+0.7
3,422,209	-		GFF3381	0.11	-0.5
3,422,209	-		GFF3381	0.11	-0.1
3,422,209	-		GFF3381	0.11	+1.3
3,422,209	-		GFF3381	0.11	+0.2
3,422,209	-		GFF3381	0.11	-0.2
3,422,223	+		GFF3381	0.19	+0.6
3,422,228	+		GFF3381	0.22	+1.5
3,422,228	+		GFF3381	0.22	+1.6
3,422,229	-		GFF3381	0.23	-0.2
3,422,231	-		GFF3381	0.24	+1.3
3,422,231	-		GFF3381	0.24	+0.7
3,422,236	-		GFF3381	0.27	-1.0
3,422,241	+		GFF3381	0.30	-0.1
3,422,241	+		GFF3381	0.30	+1.0
3,422,247	-		GFF3381	0.34	+0.7
3,422,249	-		GFF3381	0.35	-2.2
3,422,263	+		GFF3381	0.44	+0.8
3,422,263	+		GFF3381	0.44	-0.4
3,422,263	+		GFF3381	0.44	+0.3
3,422,268	+		GFF3381	0.47	+1.0
3,422,268	+		GFF3381	0.47	-1.3
3,422,268	+		GFF3381	0.47	+0.6
3,422,268	+		GFF3381	0.47	-0.3
3,422,271	-		GFF3381	0.48	+1.2
3,422,271	-		GFF3381	0.48	+1.1
3,422,278	+		GFF3381	0.53	+1.1
3,422,278	+		GFF3381	0.53	+0.6
3,422,306	-		GFF3381	0.70	+1.0
3,422,319	+		GFF3381	0.78	+0.8
3,422,356	+				+0.7
3,422,364	+				-0.5
3,422,366	+				+0.7
3,422,366	+				+1.7
3,422,374	-				+0.6
3,422,374	-				+1.0
3,422,374	-				+0.2
3,422,374	-				-0.0
3,422,400	+				-0.2
3,422,400	+				-0.2
3,422,408	-				-0.1
3,422,441	+				+0.5
3,422,453	-				+0.8
3,422,470	-				-0.2
3,422,472	-				-1.8
3,422,484	-				-0.5
3,422,561	+				+0.6
3,422,569	-				+0.3
3,422,569	-				-0.9
3,422,577	+				+1.4
3,422,577	+				+0.8
3,422,587	+				-0.3
3,422,587	+				+0.3
3,422,595	-				+0.5
3,422,616	-				-1.0
3,422,616	-				-0.6
3,422,642	-		GFF3382	0.13	-1.4
3,422,651	+		GFF3382	0.15	-2.4
3,422,664	-		GFF3382	0.18	-0.3
3,422,687	-		GFF3382	0.24	+1.5
3,422,702	-		GFF3382	0.28	+1.4
3,422,767	-		GFF3382	0.45	+0.6
3,422,777	+		GFF3382	0.48	+0.7
3,422,793	-		GFF3382	0.52	+0.9
3,422,797	+		GFF3382	0.53	-0.4
3,422,826	+		GFF3382	0.61	+0.4
3,422,883	-		GFF3382	0.76	+0.8
3,422,892	-		GFF3382	0.78	+0.6
3,422,900	-		GFF3382	0.80	-0.4
3,422,906	-		GFF3382	0.82	+1.2
3,422,912	+		GFF3382	0.83	+1.4
3,422,920	-		GFF3382	0.85	-0.7
3,422,925	-		GFF3382	0.86	-0.7
3,422,940	+				+0.2
3,422,951	-				+0.6
3,422,965	+				+1.5
3,422,973	-				+0.9
3,422,978	-				-0.4
3,422,995	+				+0.6
3,423,016	-				-0.3
3,423,018	+				-0.0
3,423,024	-				+0.9
3,423,026	-				+0.0
3,423,043	-				-0.1
3,423,043	-				-0.2
3,423,043	-				-0.0
3,423,067	+				+1.1
3,423,067	+				+2.0
3,423,067	+				-0.6
3,423,075	-				+0.8
3,423,075	-				+0.5
3,423,075	-				-0.2
3,423,075	-				-0.3
3,423,075	-				+1.7
3,423,075	-				-1.7
3,423,075	-				-0.8
3,423,075	-				-1.6
3,423,075	-				+0.3
3,423,089	+		GFF3383	0.11	+0.9
3,423,124	+		GFF3383	0.15	+1.1
3,423,137	-		GFF3383	0.16	-0.4
3,423,161	+		GFF3383	0.19	-0.7
3,423,161	+		GFF3383	0.19	-2.0
3,423,161	+		GFF3383	0.19	+0.5
3,423,201	+		GFF3383	0.23	+0.1
3,423,227	-		GFF3383	0.26	+0.0
3,423,258	-		GFF3383	0.30	+0.2
3,423,263	+		GFF3383	0.30	+1.6
3,423,287	+		GFF3383	0.33	+1.8
3,423,299	-		GFF3383	0.34	-0.5
3,423,301	-		GFF3383	0.34	+0.1
3,423,315	+		GFF3383	0.36	+0.2
3,423,315	+		GFF3383	0.36	+0.1
3,423,315	+		GFF3383	0.36	+0.3
3,423,323	-		GFF3383	0.37	+0.4
3,423,323	-		GFF3383	0.37	+0.7
3,423,323	-		GFF3383	0.37	+1.1
3,423,323	-		GFF3383	0.37	+0.6
3,423,337	+		GFF3383	0.38	+1.6
3,423,337	+		GFF3383	0.38	+1.0
3,423,337	+		GFF3383	0.38	-0.6
3,423,337	+		GFF3383	0.38	-2.1
3,423,337	+		GFF3383	0.38	-0.9
3,423,337	+		GFF3383	0.38	+0.8
3,423,345	-		GFF3383	0.39	-0.3
3,423,345	-		GFF3383	0.39	+0.6
3,423,352	-		GFF3383	0.40	+0.1
3,423,371	+		GFF3383	0.42	+0.8
3,423,377	+		GFF3383	0.43	+0.7
3,423,377	+		GFF3383	0.43	-0.7
3,423,377	+		GFF3383	0.43	+0.9
3,423,377	+		GFF3383	0.43	+0.7
3,423,377	+		GFF3383	0.43	+1.2
3,423,381	-		GFF3383	0.43	+1.4
3,423,385	-		GFF3383	0.44	-0.7
3,423,385	-		GFF3383	0.44	-0.0
3,423,408	+		GFF3383	0.46	-1.6
3,423,416	-		GFF3383	0.47	+0.6
3,423,416	-		GFF3383	0.47	-0.5
3,423,416	-		GFF3383	0.47	+1.1
3,423,416	-		GFF3383	0.47	+0.3
3,423,425	-		GFF3383	0.48	+0.9
3,423,437	+		GFF3383	0.50	-1.2
3,423,443	+		GFF3383	0.50	+0.7
3,423,445	-		GFF3383	0.51	-0.1
3,423,445	-		GFF3383	0.51	-0.4
3,423,447	+		GFF3383	0.51	+0.3
3,423,455	+		GFF3383	0.52	-1.9
3,423,455	-		GFF3383	0.52	-0.2
3,423,455	-		GFF3383	0.52	+1.3
3,423,497	+		GFF3383	0.56	-0.3
3,423,526	+		GFF3383	0.60	+0.7
3,423,537	+		GFF3383	0.61	-1.7
3,423,537	+		GFF3383	0.61	+0.1
3,423,545	-		GFF3383	0.62	-1.4
3,423,545	-		GFF3383	0.62	+0.1
3,423,547	-		GFF3383	0.62	+0.6
3,423,582	-		GFF3383	0.66	+0.9
3,423,583	+		GFF3383	0.66	-0.3
3,423,586	-		GFF3383	0.66	+0.4
3,423,596	-		GFF3383	0.68	+0.2
3,423,596	-		GFF3383	0.68	-1.2
3,423,606	-		GFF3383	0.69	-0.7
3,423,613	-		GFF3383	0.69	+0.4
3,423,618	-		GFF3383	0.70	+0.5
3,423,618	-		GFF3383	0.70	-0.8
3,423,630	+		GFF3383	0.71	+0.5
3,423,633	-		GFF3383	0.72	+0.2
3,423,671	+		GFF3383	0.76	+0.4
3,423,683	+		GFF3383	0.77	-1.3
3,423,686	+		GFF3383	0.78	+0.3
3,423,689	+		GFF3383	0.78	-0.1
3,423,691	-		GFF3383	0.78	+0.8
3,423,693	+		GFF3383	0.78	+0.6
3,423,694	+		GFF3383	0.79	+0.3
3,423,701	-		GFF3383	0.79	+0.3
3,423,702	-		GFF3383	0.79	-1.2
3,423,706	+		GFF3383	0.80	-0.5
3,423,706	+		GFF3383	0.80	+0.1
3,423,714	-		GFF3383	0.81	-0.2
3,423,714	-		GFF3383	0.81	-1.0
3,423,714	-		GFF3383	0.81	+1.5
3,423,714	-		GFF3383	0.81	-0.2
3,423,714	-		GFF3383	0.81	-0.0
3,423,714	-		GFF3383	0.81	+0.8
3,423,721	+		GFF3383	0.82	-0.2
3,423,728	+		GFF3383	0.82	+0.1
3,423,728	+		GFF3383	0.82	+0.7
3,423,728	+		GFF3383	0.82	+0.4
3,423,731	-		GFF3383	0.83	+1.8
3,423,731	-		GFF3383	0.83	+0.0
3,423,736	-		GFF3383	0.83	+0.2
3,423,736	-		GFF3383	0.83	+0.7
3,423,745	+		GFF3383	0.84	-1.2
3,423,745	+		GFF3383	0.84	+0.6
3,423,753	-		GFF3383	0.85	+1.0
3,423,753	-		GFF3383	0.85	+0.6
3,423,760	+		GFF3383	0.86	-0.9
3,423,760	+		GFF3383	0.86	+0.1
3,423,760	+		GFF3383	0.86	-0.9
3,423,760	+		GFF3383	0.86	-1.3
3,423,760	+		GFF3383	0.86	-1.4
3,423,760	+		GFF3383	0.86	+0.1
3,423,768	-		GFF3383	0.87	+0.3
3,423,768	-		GFF3383	0.87	+1.2
3,423,770	+		GFF3383	0.87	-1.6
3,423,787	-		GFF3383	0.89	+0.6
3,423,803	+				+0.1
3,423,806	-				+1.8
3,423,806	-				-0.3
3,423,811	-				+0.4
3,423,811	-				+1.0
3,423,813	+				+0.0
3,423,813	+				-0.4
3,423,813	+				-0.4
3,423,813	+				+0.1
3,423,813	+				+1.2
3,423,813	+				-1.2
3,423,813	+				-0.5
3,423,821	-				+0.1
3,423,821	-				+0.8
3,423,821	-				-0.4
3,423,823	+				-0.4
3,423,831	-				-1.3
3,423,831	-				+0.1
3,423,891	+				+0.1
3,423,899	-				-0.1
3,423,899	-				+1.0
3,423,919	+				+0.3
3,423,919	+				+0.5
3,423,919	+				+1.8
3,423,919	+				+0.9
3,423,925	+				+0.0
3,423,925	+				+1.8
3,423,925	+				-1.3
3,423,927	-				-0.8
3,423,927	-				-0.8
3,423,927	-				-0.3
3,423,927	-				+0.8
3,423,927	-				+0.2
3,423,927	-				+0.7
3,423,927	-				-0.4
3,423,927	-				+1.7
3,423,933	-				-0.8
3,423,937	-				+2.1