Strain Fitness in Sphingobium sp. HT1-2 around GFF3339

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,390,003	+		GFF3337	0.37	+0.2
3,390,003	+		GFF3337	0.37	-1.1
3,390,003	+		GFF3337	0.37	-0.3
3,390,013	+		GFF3337	0.39	-0.1
3,390,015	+		GFF3337	0.40	+0.1
3,390,016	-		GFF3337	0.40	+0.1
3,390,021	-		GFF3337	0.41	-0.7
3,390,036	+		GFF3337	0.44	-0.1
3,390,044	+		GFF3337	0.46	-0.9
3,390,044	+		GFF3337	0.46	-1.0
3,390,044	+		GFF3337	0.46	-1.1
3,390,044	+		GFF3337	0.46	+0.0
3,390,052	-		GFF3337	0.48	-2.2
3,390,057	-		GFF3337	0.49	-1.4
3,390,061	+		GFF3337	0.50	-0.7
3,390,061	+		GFF3337	0.50	+0.7
3,390,061	+		GFF3337	0.50	+0.3
3,390,094	+		GFF3337	0.57	+1.7
3,390,109	-		GFF3337	0.60	-0.2
3,390,120	+		GFF3337	0.62	-1.0
3,390,190	+		GFF3337	0.77	+0.1
3,390,190	+		GFF3337	0.77	-0.7
3,390,190	+		GFF3337	0.77	+0.0
3,390,190	+		GFF3337	0.77	+0.6
3,390,198	-		GFF3337	0.79	+0.5
3,390,198	-		GFF3337	0.79	+1.0
3,390,198	-		GFF3337	0.79	-2.6
3,390,198	-		GFF3337	0.79	-0.4
3,390,267	-				-1.4
3,390,281	-				-0.7
3,390,292	+				+1.7
3,390,292	+				+0.9
3,390,299	+				-0.4
3,390,300	-				+0.3
3,390,307	-				+0.3
3,390,315	-				+1.5
3,390,315	-				-0.4
3,390,315	-				-0.3
3,390,315	-				-2.1
3,390,317	+				-0.7
3,390,325	-				+0.3
3,390,325	-				+0.1
3,390,325	-				+0.4
3,390,370	-				-0.6
3,390,410	-				+0.9
3,390,435	-				-0.1
3,390,449	-		GFF3338	0.13	-0.3
3,390,458	-		GFF3338	0.15	+0.6
3,390,466	-		GFF3338	0.16	-0.2
3,390,466	-		GFF3338	0.16	+1.1
3,390,513	+		GFF3338	0.26	+0.7
3,390,521	-		GFF3338	0.27	+0.6
3,390,521	-		GFF3338	0.27	-0.1
3,390,521	-		GFF3338	0.27	+1.1
3,390,521	-		GFF3338	0.27	+1.5
3,390,523	+		GFF3338	0.28	+1.4
3,390,531	-		GFF3338	0.29	+0.4
3,390,531	-		GFF3338	0.29	-0.1
3,390,546	+		GFF3338	0.33	+0.4
3,390,547	-		GFF3338	0.33	+0.8
3,390,554	-		GFF3338	0.34	+0.5
3,390,577	-		GFF3338	0.39	+0.5
3,390,582	+		GFF3338	0.40	-0.8
3,390,590	-		GFF3338	0.41	-1.6
3,390,590	-		GFF3338	0.41	-0.4
3,390,599	-		GFF3338	0.43	-0.9
3,390,609	-		GFF3338	0.45	+1.1
3,390,616	+		GFF3338	0.47	+0.8
3,390,621	+		GFF3338	0.48	+1.5
3,390,626	+		GFF3338	0.49	-0.6
3,390,629	-		GFF3338	0.49	-1.1
3,390,629	-		GFF3338	0.49	-1.2
3,390,648	-		GFF3338	0.53	-0.2
3,390,683	-		GFF3338	0.60	+0.3
3,390,718	-		GFF3338	0.67	+1.5
3,390,736	+		GFF3338	0.71	+0.1
3,390,750	-		GFF3338	0.74	+0.9
3,390,778	+		GFF3338	0.80	-1.0
3,390,778	+		GFF3338	0.80	+0.6
3,390,778	+		GFF3338	0.80	-0.1
3,390,786	-		GFF3338	0.81	+0.3
3,390,786	-		GFF3338	0.81	+0.9
3,390,803	+		GFF3338	0.85	+1.1
3,390,803	+		GFF3338	0.85	+0.6
3,390,803	+		GFF3338	0.85	+0.2
3,390,809	-		GFF3338	0.86	-0.7
3,390,811	-		GFF3338	0.86	+0.3
3,390,811	-		GFF3338	0.86	+0.5
3,390,811	-		GFF3338	0.86	+1.3
3,390,811	-		GFF3338	0.86	+0.4
3,390,811	-		GFF3338	0.86	-0.4
3,390,811	-		GFF3338	0.86	+1.1
3,390,831	+				-1.5
3,390,831	-				-1.6
3,390,845	-				+0.9
3,390,862	+				-0.5
3,390,862	+				+1.3
3,390,862	+				-1.8
3,390,873	+				+0.2
3,390,873	+				+0.3
3,390,873	+				+0.5
3,390,873	+				-1.8
3,390,873	+				+0.3
3,390,873	+				+0.1
3,390,873	+				+0.2
3,390,873	+				-1.2
3,390,873	+				-1.7
3,390,873	+				+0.8
3,390,875	+				+2.0
3,390,881	+				+0.0
3,390,881	+				-0.7
3,390,881	-				-1.6
3,390,881	-				+0.7
3,390,881	-				-0.4
3,390,881	-				+0.6
3,390,881	-				-0.2
3,390,881	-				+1.0
3,390,881	-				-1.2
3,390,881	-				+1.0
3,390,881	-				+0.2
3,390,881	-				-1.6
3,390,881	-				-0.6
3,390,881	-				+0.3
3,390,881	-				-0.4
3,390,881	-				-1.5
3,390,883	+				-0.0
3,390,883	+				+1.8
3,390,883	+				-2.1
3,390,891	-				+0.7
3,390,891	-				+1.0
3,390,891	-				-0.7
3,390,891	-				-0.7
3,390,916	+				-2.3
3,390,931	+				+0.1
3,390,931	+				-0.4
3,390,939	-				+1.1
3,390,998	+				-0.8
3,390,998	+				-1.0
3,390,998	+				-0.6
3,391,003	+				-0.6
3,391,003	+				+0.1
3,391,006	-				+0.5
3,391,006	-				+0.8
3,391,006	-				+0.3
3,391,011	-				-0.1
3,391,024	+				-1.9
3,391,032	-				-0.7
3,391,097	-		GFF3339	0.17	-0.8
3,391,098	-		GFF3339	0.17	-1.1
3,391,102	-		GFF3339	0.18	-2.4
3,391,102	-		GFF3339	0.18	-2.4
3,391,102	-		GFF3339	0.18	+0.7
3,391,106	-		GFF3339	0.19	-2.4
3,391,109	+		GFF3339	0.19	-0.7
3,391,111	+		GFF3339	0.20	-1.9
3,391,111	+		GFF3339	0.20	-0.8
3,391,160	+		GFF3339	0.28	+1.5
3,391,163	-		GFF3339	0.29	-0.6
3,391,170	+		GFF3339	0.30	-0.6
3,391,170	+		GFF3339	0.30	+0.3
3,391,170	+		GFF3339	0.30	+0.1
3,391,226	+		GFF3339	0.40	+0.6
3,391,239	-		GFF3339	0.42	+0.4
3,391,245	-		GFF3339	0.43	-1.1
3,391,256	+		GFF3339	0.45	-0.1
3,391,256	+		GFF3339	0.45	-1.7
3,391,256	+		GFF3339	0.45	-0.6
3,391,256	+		GFF3339	0.45	-0.3
3,391,256	+		GFF3339	0.45	+0.4
3,391,256	+		GFF3339	0.45	+0.7
3,391,256	+		GFF3339	0.45	-0.3
3,391,258	+		GFF3339	0.46	-1.6
3,391,258	+		GFF3339	0.46	+0.1
3,391,258	+		GFF3339	0.46	+1.0
3,391,259	-		GFF3339	0.46	+0.8
3,391,261	+		GFF3339	0.46	-1.2
3,391,276	-		GFF3339	0.49	-0.4
3,391,279	-		GFF3339	0.49	+0.6
3,391,290	-		GFF3339	0.51	-0.2
3,391,297	-		GFF3339	0.52	-0.4
3,391,305	+		GFF3339	0.54	-1.9
3,391,310	+		GFF3339	0.55	-0.3
3,391,310	+		GFF3339	0.55	+1.1
3,391,310	+		GFF3339	0.55	+0.3
3,391,310	+		GFF3339	0.55	-1.7
3,391,310	+		GFF3339	0.55	+0.1
3,391,310	+		GFF3339	0.55	-0.9
3,391,310	+		GFF3339	0.55	-0.1
3,391,310	+		GFF3339	0.55	-1.6
3,391,310	+		GFF3339	0.55	+1.2
3,391,313	-		GFF3339	0.55	-2.2
3,391,318	-		GFF3339	0.56	-0.4
3,391,318	-		GFF3339	0.56	-1.4
3,391,318	-		GFF3339	0.56	-0.4
3,391,318	-		GFF3339	0.56	+1.0
3,391,318	-		GFF3339	0.56	-0.4
3,391,318	-		GFF3339	0.56	-0.8
3,391,320	+		GFF3339	0.56	-1.0
3,391,320	+		GFF3339	0.56	+1.5
3,391,320	+		GFF3339	0.56	-1.0
3,391,328	+		GFF3339	0.58	-0.3
3,391,328	+		GFF3339	0.58	-0.8
3,391,328	+		GFF3339	0.58	+0.3
3,391,328	+		GFF3339	0.58	+0.1
3,391,328	-		GFF3339	0.58	-1.7
3,391,328	-		GFF3339	0.58	-0.3
3,391,333	+		GFF3339	0.59	+0.8
3,391,336	-		GFF3339	0.59	+0.8
3,391,349	+		GFF3339	0.62	+0.3
3,391,352	+		GFF3339	0.62	+0.7
3,391,357	-		GFF3339	0.63	+0.1
3,391,370	-		GFF3339	0.65	-1.0
3,391,380	+		GFF3339	0.67	+0.7
3,391,383	-		GFF3339	0.68	+0.3
3,391,383	-		GFF3339	0.68	-0.8
3,391,385	+		GFF3339	0.68	-0.2
3,391,386	+		GFF3339	0.68	-1.0
3,391,388	-		GFF3339	0.68	+0.9
3,391,388	-		GFF3339	0.68	+0.3
3,391,388	-		GFF3339	0.68	-1.6
3,391,391	+		GFF3339	0.69	-0.6
3,391,394	-		GFF3339	0.69	-2.6
3,391,416	+		GFF3339	0.73	+0.1
3,391,416	+		GFF3339	0.73	+0.6
3,391,421	+		GFF3339	0.74	-2.3
3,391,424	-		GFF3339	0.75	-0.2
3,391,424	-		GFF3339	0.75	+0.3
3,391,424	-		GFF3339	0.75	-0.7
3,391,429	-		GFF3339	0.76	+1.5
3,391,463	+		GFF3339	0.82	-1.3
3,391,478	+		GFF3339	0.84	+0.3
3,391,478	+		GFF3339	0.84	+0.1
3,391,509	-		GFF3339	0.90	-2.3
3,391,509	-		GFF3339	0.90	-0.9
3,391,509	-		GFF3339	0.90	+0.1
3,391,521	-				-0.9
3,391,537	+				-1.2
3,391,540	-				-1.4
3,391,555	-				-2.1
3,391,595	+				-2.0
3,391,606	-				-0.1
3,391,646	+		GFF3340	0.21	-0.3
3,391,657	+		GFF3340	0.24	-1.2
3,391,678	+		GFF3340	0.31	+0.7
3,391,678	+		GFF3340	0.31	+0.1
3,391,678	+		GFF3340	0.31	+0.4
3,391,678	+		GFF3340	0.31	-0.9
3,391,678	+		GFF3340	0.31	+0.2
3,391,678	+		GFF3340	0.31	+0.1
3,391,678	+		GFF3340	0.31	+0.3
3,391,678	+		GFF3340	0.31	-0.2
3,391,681	-		GFF3340	0.32	+0.8
3,391,686	-		GFF3340	0.33	+0.4
3,391,686	-		GFF3340	0.33	-0.1
3,391,686	-		GFF3340	0.33	-1.3
3,391,686	-		GFF3340	0.33	+0.6
3,391,686	-		GFF3340	0.33	-0.2
3,391,686	-		GFF3340	0.33	-1.3
3,391,718	+		GFF3340	0.43	+0.9
3,391,742	+		GFF3340	0.51	-0.8
3,391,742	+		GFF3340	0.51	-1.3
3,391,742	+		GFF3340	0.51	-0.8
3,391,789	-		GFF3340	0.65	-0.1
3,391,820	+		GFF3340	0.75	-1.0
3,391,911	-				-0.8
3,391,912	+				-0.8
3,391,912	+				-0.4
3,391,912	+				+0.7
3,391,912	+				-0.5
3,391,912	+				+0.3
3,391,913	-				-1.7
3,391,920	-				-1.8
3,391,920	-				-1.6
3,391,920	-				-0.7
3,391,920	-				+0.7
3,391,925	-				+0.2
3,391,927	-				+0.4
3,391,929	+				+0.0
3,391,935	-				-2.3
3,391,937	-				-0.2
3,391,950	+				+0.2
3,391,950	+				-0.2
3,391,950	+				-0.4
3,391,950	+				-0.5
3,391,950	+				-2.8
3,391,950	+				-0.7
3,391,950	+				-0.4
3,391,950	+				+0.6
3,391,950	+				-0.4
3,391,950	+				-1.4
3,391,950	+				-0.5
3,391,950	+				-0.5
3,391,950	+				-0.3
3,391,950	+				+0.4
3,391,950	+				+0.0
3,391,950	+				+0.4
3,391,950	+				-1.9
3,391,951	+				-1.8
3,391,951	+				+1.0
3,391,951	+				-0.9
3,391,958	-				+0.8
3,391,958	-				-0.8
3,391,958	-				+0.1
3,391,958	-				+0.5
3,391,958	-				-0.6
3,391,958	-				-2.2
3,391,958	-				-1.4
3,391,958	-				-1.4
3,391,958	-				-1.6
3,391,958	-				+0.0
3,391,958	-				+0.9
3,391,959	-				+0.2
3,391,959	-				+1.2
3,392,000	+				+0.5
3,392,006	-				-0.4
3,392,295	+				+0.3
3,392,329	-				-2.4
3,392,367	+				+0.1
3,392,367	+				+0.9
3,392,367	+				+0.2
3,392,375	-				+0.3
3,392,384	-				+0.4
3,392,397	-				-1.4
3,392,526	-				-3.0
3,392,554	-				-0.3