Strain Fitness in Sphingobium sp. HT1-2 around GFF3323

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,376,695	+		GFF3322	0.15	-1.1
3,376,695	+		GFF3322	0.15	-0.6
3,376,713	+		GFF3322	0.17	-1.8
3,376,721	-		GFF3322	0.18	-2.4
3,376,721	-		GFF3322	0.18	-2.1
3,376,765	+		GFF3322	0.22	-0.9
3,376,765	+		GFF3322	0.22	-3.4
3,376,765	+		GFF3322	0.22	-3.4
3,376,765	-		GFF3322	0.22	-0.3
3,376,765	-		GFF3322	0.22	-1.2
3,376,773	-		GFF3322	0.22	-2.3
3,376,773	-		GFF3322	0.22	-2.7
3,376,796	+		GFF3322	0.24	-0.8
3,376,808	+		GFF3322	0.25	-1.9
3,376,833	+		GFF3322	0.28	-1.7
3,376,841	-		GFF3322	0.28	-2.3
3,376,856	-		GFF3322	0.30	-0.2
3,376,882	+		GFF3322	0.32	-2.0
3,376,971	-		GFF3322	0.40	-3.1
3,376,984	+		GFF3322	0.41	-2.7
3,376,984	+		GFF3322	0.41	-2.0
3,376,984	+		GFF3322	0.41	-2.2
3,376,984	+		GFF3322	0.41	-2.3
3,376,989	+		GFF3322	0.42	-2.0
3,376,992	-		GFF3322	0.42	-2.1
3,376,992	-		GFF3322	0.42	-3.7
3,376,992	-		GFF3322	0.42	-0.8
3,377,037	+		GFF3322	0.46	-0.1
3,377,045	-		GFF3322	0.47	-1.3
3,377,046	+		GFF3322	0.47	-2.0
3,377,064	-		GFF3322	0.48	+0.6
3,377,074	-		GFF3322	0.49	+0.3
3,377,101	+		GFF3322	0.52	-1.1
3,377,101	+		GFF3322	0.52	-1.9
3,377,101	+		GFF3322	0.52	-1.2
3,377,101	+		GFF3322	0.52	-0.9
3,377,101	+		GFF3322	0.52	-3.0
3,377,106	+		GFF3322	0.52	-2.1
3,377,109	-		GFF3322	0.53	-1.5
3,377,109	-		GFF3322	0.53	-1.6
3,377,109	-		GFF3322	0.53	-0.1
3,377,109	-		GFF3322	0.53	+0.6
3,377,109	-		GFF3322	0.53	-1.3
3,377,131	+		GFF3322	0.55	-2.8
3,377,134	-		GFF3322	0.55	-1.3
3,377,138	-		GFF3322	0.55	-0.8
3,377,150	-		GFF3322	0.56	-0.9
3,377,152	+		GFF3322	0.56	-1.9
3,377,152	+		GFF3322	0.56	-2.8
3,377,152	+		GFF3322	0.56	-2.0
3,377,152	+		GFF3322	0.56	-2.8
3,377,160	-		GFF3322	0.57	-1.9
3,377,188	-		GFF3322	0.60	-1.4
3,377,225	+		GFF3322	0.63	-2.0
3,377,230	+		GFF3322	0.63	-3.1
3,377,230	+		GFF3322	0.63	-2.3
3,377,230	+		GFF3322	0.63	+0.2
3,377,249	-		GFF3322	0.65	-3.0
3,377,249	-		GFF3322	0.65	-1.8
3,377,258	+		GFF3322	0.66	-2.3
3,377,260	+		GFF3322	0.66	-2.7
3,377,349	-		GFF3322	0.74	-0.8
3,377,391	-		GFF3322	0.78	+0.9
3,377,407	+		GFF3322	0.79	-2.5
3,377,429	+		GFF3322	0.81	-1.1
3,377,429	+		GFF3322	0.81	-3.4
3,377,429	+		GFF3322	0.81	-1.1
3,377,437	-		GFF3322	0.82	-1.6
3,377,468	+		GFF3322	0.85	-1.5
3,377,481	-		GFF3322	0.86	-1.8
3,377,489	+		GFF3322	0.87	-2.7
3,377,497	-		GFF3322	0.87	-2.5
3,377,506	+		GFF3322	0.88	-2.8
3,377,506	+		GFF3322	0.88	-2.2
3,377,508	-		GFF3322	0.88	-1.7
3,377,512	+		GFF3322	0.89	-2.7
3,377,512	+		GFF3322	0.89	-0.5
3,377,512	+		GFF3322	0.89	-0.2
3,377,513	+		GFF3322	0.89	-0.6
3,377,519	+		GFF3322	0.89	-3.0
3,377,521	-		GFF3322	0.90	-2.7
3,377,538	+				-0.9
3,377,548	+				-1.6
3,377,548	+				-0.3
3,377,555	+				-1.5
3,377,568	-				-0.1
3,377,577	+				-2.2
3,377,577	+				-0.8
3,377,582	+				-2.1
3,377,590	-				-0.9
3,377,590	-				+0.2
3,377,590	-				-1.9
3,377,590	-				-2.1
3,377,590	-				-2.3
3,377,590	-				-0.5
3,377,595	-				-2.4
3,377,609	-				-1.6
3,377,611	-				-2.8
3,377,611	-				-0.8
3,377,643	-				-3.2
3,377,648	-				+0.1
3,377,648	-				-1.7
3,377,648	-				+0.5
3,377,671	+				-0.6
3,377,671	+				-0.8
3,377,671	+				-0.7
3,377,671	+				-0.8
3,377,671	+				-1.2
3,377,671	+				-2.7
3,377,671	+				-2.0
3,377,671	+				-0.2
3,377,671	+				-0.9
3,377,671	+				-0.6
3,377,671	+				-1.3
3,377,671	+				-3.5
3,377,671	+				-2.1
3,377,676	+				-1.9
3,377,679	-				-1.5
3,377,679	-				+0.8
3,377,679	-				-0.8
3,377,679	-				-0.2
3,377,679	-				+0.0
3,377,679	-				-2.1
3,377,679	-				-0.5
3,377,679	-				-1.8
3,377,679	-				-1.5
3,377,679	-				-1.8
3,377,679	-				-0.1
3,377,679	-				-1.9
3,377,681	+				-0.8
3,377,684	-				-0.7
3,377,696	+				-2.4
3,377,721	-				+0.8
3,377,725	-				-0.9
3,377,727	+				-0.8
3,377,746	+		GFF3323	0.12	+0.2
3,377,752	+		GFF3323	0.12	-1.6
3,377,752	+		GFF3323	0.12	-0.5
3,377,769	+		GFF3323	0.14	-1.5
3,377,787	-		GFF3323	0.16	-0.5
3,377,801	+		GFF3323	0.18	-1.2
3,377,841	+		GFF3323	0.22	+0.2
3,377,849	-		GFF3323	0.23	-0.1
3,377,857	-		GFF3323	0.24	-2.0
3,377,857	-		GFF3323	0.24	-0.1
3,377,870	+		GFF3323	0.25	+0.5
3,377,872	-		GFF3323	0.26	-0.2
3,377,901	-		GFF3323	0.29	+0.7
3,377,909	-		GFF3323	0.30	-0.8
3,377,918	+		GFF3323	0.31	-1.6
3,377,949	-		GFF3323	0.34	-3.0
3,377,960	+		GFF3323	0.35	-1.5
3,377,960	+		GFF3323	0.35	-1.0
3,377,960	+		GFF3323	0.35	-0.7
3,377,960	+		GFF3323	0.35	-1.0
3,377,968	-		GFF3323	0.36	-0.1
3,377,968	-		GFF3323	0.36	-0.9
3,377,968	-		GFF3323	0.36	-0.9
3,377,968	-		GFF3323	0.36	-2.2
3,378,126	-		GFF3323	0.54	-0.8
3,378,188	+		GFF3323	0.60	-2.2
3,378,219	+		GFF3323	0.64	-1.2
3,378,244	+		GFF3323	0.67	-2.5
3,378,246	+		GFF3323	0.67	-2.6
3,378,256	+		GFF3323	0.68	+0.2
3,378,256	+		GFF3323	0.68	-2.8
3,378,256	+		GFF3323	0.68	-0.4
3,378,256	+		GFF3323	0.68	-0.8
3,378,258	+		GFF3323	0.68	-2.6
3,378,264	-		GFF3323	0.69	-0.1
3,378,264	-		GFF3323	0.69	-1.3
3,378,264	-		GFF3323	0.69	-1.1
3,378,264	-		GFF3323	0.69	-2.2
3,378,283	-		GFF3323	0.71	-0.4
3,378,322	+		GFF3323	0.75	-0.2
3,378,335	-		GFF3323	0.77	-1.2
3,378,402	+		GFF3323	0.84	+0.2
3,378,411	+		GFF3323	0.85	+0.9
3,378,419	-		GFF3323	0.86	+1.2
3,378,450	+		GFF3323	0.89	-0.8
3,378,459	+				-1.8
3,378,459	-				-1.3
3,378,511	-				-1.2
3,378,512	-				-1.7
3,378,512	-				-0.1
3,378,517	-				+0.4
3,378,517	-				-0.2
3,378,521	+				+0.5
3,378,523	-				-2.4
3,378,529	-				-0.9
3,379,329	-				-0.6
3,379,414	+		GFF3325	0.15	+0.1
3,379,414	+		GFF3325	0.15	-0.9
3,379,414	+		GFF3325	0.15	+1.1
3,379,414	+		GFF3325	0.15	-0.5
3,379,414	+		GFF3325	0.15	-2.0
3,379,414	+		GFF3325	0.15	+1.9
3,379,447	+		GFF3325	0.21	-0.7
3,379,447	+		GFF3325	0.21	-0.3
3,379,533	+		GFF3325	0.37	-2.1
3,379,533	+		GFF3325	0.37	-0.1
3,379,533	+		GFF3325	0.37	-0.3
3,379,533	+		GFF3325	0.37	-0.7
3,379,541	-		GFF3325	0.39	-0.1