Strain Fitness in Sphingobium sp. HT1-2 around GFF33

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF30 and GFF31 are separated by 299 nucleotidesGFF31 and GFF32 are separated by 77 nucleotidesGFF32 and GFF33 are separated by 98 nucleotidesGFF33 and GFF34 are separated by 62 nucleotidesGFF34 and GFF35 are separated by 160 nucleotidesGFF35 and GFF36 are separated by 79 nucleotides GFF30 - hypothetical protein, at 26,288 to 26,803 GFF30 GFF31 - Phage lysin (EC 3.2.1.17) # Phage lysozyme or muramidase (EC 3.2.1.17), at 27,103 to 27,312 GFF31 GFF32 - hypothetical protein, at 27,390 to 27,506 GFF32 GFF33 - hypothetical protein, at 27,605 to 27,721 GFF33 GFF34 - hypothetical protein, at 27,784 to 27,912 GFF34 GFF35 - hypothetical protein, at 28,073 to 28,234 GFF35 GFF36 - hypothetical protein, at 28,314 to 28,754 GFF36 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1at 26.642 kb on + strand, within GFF30at 26.650 kb on - strand, within GFF30at 26.650 kb on - strand, within GFF30at 26.650 kb on - strand, within GFF30at 26.655 kb on + strand, within GFF30at 26.685 kb on - strand, within GFF30at 26.952 kb on + strandat 26.981 kb on + strandat 26.987 kb on + strandat 26.994 kb on - strandat 27.004 kb on - strandat 27.026 kb on + strandat 27.026 kb on - strandat 27.111 kb on + strandat 27.127 kb on + strand, within GFF31at 27.135 kb on - strand, within GFF31at 27.137 kb on - strand, within GFF31at 27.197 kb on + strand, within GFF31at 27.200 kb on - strand, within GFF31at 27.205 kb on + strand, within GFF31at 27.256 kb on + strand, within GFF31at 27.256 kb on + strand, within GFF31at 27.264 kb on - strand, within GFF31at 27.278 kb on - strand, within GFF31at 27.309 kb on - strandat 27.340 kb on - strandat 27.369 kb on - strandat 27.388 kb on + strandat 27.396 kb on - strandat 27.396 kb on - strandat 27.396 kb on - strandat 27.407 kb on + strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.441 kb on + strand, within GFF32at 27.556 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.599 kb on - strandat 27.599 kb on - strandat 27.606 kb on + strandat 27.650 kb on - strand, within GFF33at 27.700 kb on - strand, within GFF33at 27.713 kb on - strandat 27.729 kb on + strandat 27.731 kb on - strandat 27.731 kb on - strandat 27.823 kb on - strand, within GFF34at 27.924 kb on - strandat 27.928 kb on + strandat 27.940 kb on + strandat 27.940 kb on + strandat 27.940 kb on + strandat 27.940 kb on + strandat 27.950 kb on + strandat 27.958 kb on - strandat 27.980 kb on - strandat 27.981 kb on + strandat 27.981 kb on - strandat 27.985 kb on - strandat 27.994 kb on + strandat 28.000 kb on + strandat 28.005 kb on + strandat 28.005 kb on + strandat 28.008 kb on - strandat 28.014 kb on + strandat 28.028 kb on - strandat 28.039 kb on + strandat 28.055 kb on - strandat 28.056 kb on - strandat 28.063 kb on - strandat 28.063 kb on - strandat 28.063 kb on - strandat 28.063 kb on - strandat 28.086 kb on + strandat 28.087 kb on + strandat 28.094 kb on - strand, within GFF35at 28.144 kb on - strand, within GFF35at 28.164 kb on + strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.172 kb on - strand, within GFF35at 28.215 kb on + strand, within GFF35at 28.215 kb on + strand, within GFF35at 28.223 kb on - strandat 28.311 kb on + strandat 28.311 kb on + strandat 28.369 kb on + strand, within GFF36at 28.373 kb on + strand, within GFF36at 28.387 kb on - strand, within GFF36at 28.387 kb on - strand, within GFF36at 28.425 kb on - strand, within GFF36at 28.433 kb on + strand, within GFF36at 28.433 kb on + strand, within GFF36at 28.436 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.441 kb on - strand, within GFF36at 28.443 kb on + strand, within GFF36at 28.443 kb on + strand, within GFF36at 28.443 kb on + strand, within GFF36at 28.445 kb on + strand, within GFF36at 28.451 kb on - strand, within GFF36at 28.451 kb on - strand, within GFF36at 28.451 kb on - strand, within GFF36at 28.457 kb on + strand, within GFF36at 28.467 kb on + strand, within GFF36at 28.475 kb on - strand, within GFF36at 28.475 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.498 kb on - strand, within GFF36at 28.514 kb on - strand, within GFF36at 28.514 kb on - strand, within GFF36at 28.521 kb on + strand, within GFF36at 28.616 kb on + strand, within GFF36at 28.616 kb on + strand, within GFF36at 28.616 kb on + strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.624 kb on - strand, within GFF36at 28.627 kb on - strand, within GFF36at 28.658 kb on + strand, within GFF36at 28.659 kb on + strand, within GFF36at 28.660 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.666 kb on - strand, within GFF36at 28.667 kb on - strand, within GFF36

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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26,642 + GFF30 0.69 -1.2
26,650 - GFF30 0.70 -0.3
26,650 - GFF30 0.70 +0.8
26,650 - GFF30 0.70 +0.8
26,655 + GFF30 0.71 -0.2
26,685 - GFF30 0.77 -0.6
26,952 + -1.1
26,981 + -1.2
26,987 + +1.1
26,994 - +0.4
27,004 - +0.2
27,026 + +0.9
27,026 - -0.1
27,111 + -0.3
27,127 + GFF31 0.11 -0.7
27,135 - GFF31 0.15 -0.0
27,137 - GFF31 0.16 -0.4
27,197 + GFF31 0.45 +0.3
27,200 - GFF31 0.46 +0.7
27,205 + GFF31 0.49 -0.0
27,256 + GFF31 0.73 +0.1
27,256 + GFF31 0.73 +0.1
27,264 - GFF31 0.77 +0.1
27,278 - GFF31 0.83 +0.1
27,309 - +0.2
27,340 - +1.5
27,369 - +0.6
27,388 + -0.7
27,396 - -0.4
27,396 - -1.6
27,396 - -0.1
27,407 + GFF32 0.15 +0.4
27,410 - GFF32 0.17 +0.2
27,410 - GFF32 0.17 -0.9
27,410 - GFF32 0.17 -1.2
27,410 - GFF32 0.17 +1.3
27,441 + GFF32 0.44 +0.6
27,556 + +0.7
27,591 + -1.6
27,591 + -2.2
27,591 + +0.3
27,591 + +0.1
27,591 + +1.3
27,591 + -1.5
27,599 - -0.2
27,599 - +1.3
27,606 + -1.6
27,650 - GFF33 0.38 -0.6
27,700 - GFF33 0.81 -1.8
27,713 - +1.1
27,729 + -1.1
27,731 - -0.4
27,731 - +0.4
27,823 - GFF34 0.30 -1.0
27,924 - -0.2
27,928 + +0.0
27,940 + +0.8
27,940 + -1.5
27,940 + +1.2
27,940 + -0.4
27,950 + +0.1
27,958 - -0.0
27,980 - -0.1
27,981 + -0.7
27,981 - +0.1
27,985 - -0.8
27,994 + -0.4
28,000 + -0.2
28,005 + -0.5
28,005 + +0.3
28,008 - +0.8
28,014 + +0.8
28,028 - -0.7
28,039 + +0.4
28,055 - -0.1
28,056 - +0.6
28,063 - +0.9
28,063 - +0.1
28,063 - -0.5
28,063 - -0.4
28,086 + +0.0
28,087 + +1.0
28,094 - GFF35 0.13 +1.2
28,144 - GFF35 0.44 +0.4
28,164 + GFF35 0.56 -0.6
28,172 - GFF35 0.61 +0.5
28,172 - GFF35 0.61 -1.6
28,172 - GFF35 0.61 +0.1
28,172 - GFF35 0.61 +0.4
28,172 - GFF35 0.61 +0.6
28,215 + GFF35 0.88 +0.2
28,215 + GFF35 0.88 -0.8
28,223 - -1.4
28,311 + +0.2
28,311 + -0.6
28,369 + GFF36 0.12 -0.3
28,373 + GFF36 0.13 -0.4
28,387 - GFF36 0.17 -0.0
28,387 - GFF36 0.17 +0.9
28,425 - GFF36 0.25 +1.0
28,433 + GFF36 0.27 -0.4
28,433 + GFF36 0.27 +1.1
28,436 - GFF36 0.28 -1.8
28,441 - GFF36 0.29 -1.2
28,441 - GFF36 0.29 +0.4
28,441 - GFF36 0.29 +0.9
28,441 - GFF36 0.29 +0.3
28,441 - GFF36 0.29 +1.0
28,443 + GFF36 0.29 +0.4
28,443 + GFF36 0.29 -0.3
28,443 + GFF36 0.29 -0.3
28,445 + GFF36 0.30 +0.8
28,451 - GFF36 0.31 -0.3
28,451 - GFF36 0.31 +0.5
28,451 - GFF36 0.31 -2.7
28,457 + GFF36 0.32 -0.7
28,467 + GFF36 0.35 +0.6
28,475 - GFF36 0.37 +0.1
28,475 - GFF36 0.37 -0.7
28,498 - GFF36 0.42 +0.6
28,498 - GFF36 0.42 +0.3
28,498 - GFF36 0.42 -0.2
28,498 - GFF36 0.42 +0.0
28,514 - GFF36 0.45 +0.2
28,514 - GFF36 0.45 -0.5
28,521 + GFF36 0.47 +0.5
28,616 + GFF36 0.68 -1.2
28,616 + GFF36 0.68 +0.5
28,616 + GFF36 0.68 -0.6
28,624 - GFF36 0.70 +0.4
28,624 - GFF36 0.70 +0.6
28,624 - GFF36 0.70 +0.3
28,624 - GFF36 0.70 -0.2
28,624 - GFF36 0.70 -0.3
28,627 - GFF36 0.71 +0.4
28,658 + GFF36 0.78 -0.7
28,659 + GFF36 0.78 +0.1
28,660 - GFF36 0.78 +0.3
28,666 - GFF36 0.80 +0.2
28,666 - GFF36 0.80 +0.7
28,666 - GFF36 0.80 +0.1
28,666 - GFF36 0.80 -2.6
28,666 - GFF36 0.80 +0.3
28,667 - GFF36 0.80 -0.2

Or see this region's nucleotide sequence