Strain Fitness in Sphingobium sp. HT1-2 around GFF3222

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,277,467	-		GFF3221	0.18	-0.5
3,277,467	-		GFF3221	0.18	-0.9
3,277,469	+		GFF3221	0.18	-1.2
3,277,488	+		GFF3221	0.20	-0.4
3,277,488	+		GFF3221	0.20	+0.7
3,277,488	+		GFF3221	0.20	+0.4
3,277,488	+		GFF3221	0.20	+0.5
3,277,489	+		GFF3221	0.20	+0.5
3,277,494	+		GFF3221	0.21	-1.2
3,277,495	+		GFF3221	0.21	+0.5
3,277,496	-		GFF3221	0.21	-0.3
3,277,496	-		GFF3221	0.21	-0.4
3,277,496	-		GFF3221	0.21	-1.4
3,277,496	-		GFF3221	0.21	-1.4
3,277,497	-		GFF3221	0.21	+0.3
3,277,507	+		GFF3221	0.22	+0.7
3,277,507	+		GFF3221	0.22	+0.2
3,277,516	-		GFF3221	0.23	-0.2
3,277,560	-		GFF3221	0.26	-0.3
3,277,570	-		GFF3221	0.27	+0.4
3,277,570	-		GFF3221	0.27	+0.1
3,277,572	+		GFF3221	0.27	-0.2
3,277,596	+		GFF3221	0.29	+1.2
3,277,596	+		GFF3221	0.29	-0.3
3,277,604	-		GFF3221	0.30	-0.6
3,277,614	-		GFF3221	0.31	-0.7
3,277,621	+		GFF3221	0.32	-0.4
3,277,628	+		GFF3221	0.32	-1.8
3,277,628	+		GFF3221	0.32	-0.3
3,277,636	-		GFF3221	0.33	-0.2
3,277,636	-		GFF3221	0.33	+0.8
3,277,675	-		GFF3221	0.36	-1.4
3,277,693	+		GFF3221	0.38	+0.1
3,277,693	-		GFF3221	0.38	-0.2
3,277,712	+		GFF3221	0.39	+1.3
3,277,719	+		GFF3221	0.40	-1.0
3,277,721	-		GFF3221	0.40	-1.8
3,277,743	+		GFF3221	0.42	-2.7
3,277,747	+		GFF3221	0.43	-1.9
3,277,747	+		GFF3221	0.43	+0.9
3,277,747	+		GFF3221	0.43	-0.6
3,277,747	+		GFF3221	0.43	-0.7
3,277,747	+		GFF3221	0.43	-0.2
3,277,747	+		GFF3221	0.43	-1.4
3,277,747	+		GFF3221	0.43	-0.6
3,277,747	+		GFF3221	0.43	-0.4
3,277,747	+		GFF3221	0.43	+1.2
3,277,747	+		GFF3221	0.43	+0.5
3,277,747	+		GFF3221	0.43	+0.8
3,277,747	+		GFF3221	0.43	-0.5
3,277,751	-		GFF3221	0.43	+1.1
3,277,751	-		GFF3221	0.43	+0.3
3,277,755	-		GFF3221	0.43	-1.2
3,277,755	-		GFF3221	0.43	-0.5
3,277,755	-		GFF3221	0.43	-0.4
3,277,755	-		GFF3221	0.43	-1.0
3,277,755	-		GFF3221	0.43	-0.2
3,277,755	-		GFF3221	0.43	-0.3
3,277,755	-		GFF3221	0.43	-0.8
3,277,762	+		GFF3221	0.44	+1.4
3,277,767	+		GFF3221	0.44	-0.2
3,277,767	+		GFF3221	0.44	+0.3
3,277,782	-		GFF3221	0.46	-1.4
3,277,792	-		GFF3221	0.46	+0.6
3,277,800	-		GFF3221	0.47	-0.6
3,277,802	-		GFF3221	0.47	-0.2
3,277,803	+		GFF3221	0.47	-1.4
3,277,811	-		GFF3221	0.48	+0.8
3,277,811	-		GFF3221	0.48	-1.1
3,277,850	+		GFF3221	0.51	+0.8
3,277,857	+		GFF3221	0.52	-0.6
3,277,860	+		GFF3221	0.52	-0.1
3,277,867	-		GFF3221	0.53	+1.4
3,277,868	-		GFF3221	0.53	-1.7
3,277,870	-		GFF3221	0.53	+0.6
3,277,875	-		GFF3221	0.54	+0.0
3,277,879	+		GFF3221	0.54	+1.2
3,277,915	-		GFF3221	0.57	-0.7
3,277,924	-		GFF3221	0.58	+0.4
3,277,938	-		GFF3221	0.59	-0.2
3,277,977	-		GFF3221	0.62	-0.2
3,277,985	+		GFF3221	0.63	-0.1
3,277,991	+		GFF3221	0.64	-0.2
3,277,991	+		GFF3221	0.64	-0.6
3,277,991	+		GFF3221	0.64	+0.6
3,277,991	+		GFF3221	0.64	-0.9
3,277,991	+		GFF3221	0.64	+0.6
3,277,992	+		GFF3221	0.64	-1.5
3,277,999	-		GFF3221	0.64	-0.9
3,277,999	-		GFF3221	0.64	+1.2
3,277,999	-		GFF3221	0.64	-1.8
3,277,999	-		GFF3221	0.64	-0.6
3,277,999	-		GFF3221	0.64	-0.5
3,277,999	-		GFF3221	0.64	-1.7
3,278,003	+		GFF3221	0.65	-0.4
3,278,009	-		GFF3221	0.65	-1.2
3,278,028	-		GFF3221	0.67	-0.2
3,278,035	+		GFF3221	0.67	+0.0
3,278,043	+		GFF3221	0.68	-0.4
3,278,051	+		GFF3221	0.69	+0.6
3,278,062	+		GFF3221	0.70	-2.3
3,278,080	+		GFF3221	0.71	-0.7
3,278,080	+		GFF3221	0.71	+0.4
3,278,088	-		GFF3221	0.72	-0.7
3,278,119	+		GFF3221	0.75	-1.3
3,278,124	+		GFF3221	0.75	-1.4
3,278,127	-		GFF3221	0.75	-0.2
3,278,206	-		GFF3221	0.82	+0.2
3,278,228	-		GFF3221	0.84	+0.4
3,278,237	+		GFF3221	0.85	+1.2
3,278,237	+		GFF3221	0.85	-0.5
3,278,242	+		GFF3221	0.85	-0.8
3,278,245	-		GFF3221	0.86	-0.6
3,278,253	+		GFF3221	0.86	+0.8
3,278,261	-		GFF3221	0.87	+0.1
3,278,282	+		GFF3221	0.89	-2.0
3,278,282	+		GFF3221	0.89	-1.3
3,278,282	+		GFF3221	0.89	-0.3
3,278,282	+		GFF3221	0.89	-0.2
3,278,282	+		GFF3221	0.89	+0.6
3,278,282	+		GFF3221	0.89	-0.4
3,278,290	+		GFF3221	0.90	+0.6
3,278,290	-		GFF3221	0.90	-0.6
3,278,290	-		GFF3221	0.90	+0.9
3,278,290	-		GFF3221	0.90	-0.9
3,278,290	-		GFF3221	0.90	+0.7
3,278,306	+				+1.5
3,278,306	+				-0.4
3,278,306	+				-1.7
3,278,312	-				-1.4
3,278,316	+				-0.2
3,278,318	+				-1.4
3,278,324	-				+0.3
3,278,324	-				+1.7
3,278,357	+				-1.1
3,278,365	-				-0.2
3,278,384	+				+0.2
3,278,389	+				+0.7
3,278,389	+				-0.2
3,278,389	+				-1.7
3,278,397	-				+0.3
3,278,397	-				+1.2
3,278,397	-				+0.4
3,278,399	+				-0.2
3,278,402	-				+0.0
3,278,402	-				-1.1
3,278,414	+				+0.1
3,278,417	-				-0.8
3,278,417	-				-0.2
3,278,419	+				+0.4
3,278,422	-				-0.2
3,278,422	-				-0.7
3,278,473	-				+0.6
3,278,473	-				+0.4
3,278,490	+				+1.5
3,278,505	+				-0.7
3,278,513	-				-1.4
3,278,527	+				-1.0
3,278,546	+				+1.6
3,278,546	+				+0.6
3,278,546	+				-0.4
3,278,546	+				+0.9
3,278,546	+				+0.3
3,278,546	+				-0.6
3,278,546	+				-1.4
3,278,546	+				-0.2
3,278,546	+				-0.2
3,278,546	+				+1.2
3,278,546	+				-1.5
3,278,546	+				-1.2
3,278,546	+				+1.6
3,278,546	+				+0.2
3,278,546	+				-1.2
3,278,546	+				+0.2
3,278,548	+				-0.6
3,278,554	-				+0.1
3,278,554	-				+0.2
3,278,554	-				-0.9
3,278,554	-				-1.1
3,278,554	-				-1.2
3,278,554	-				+1.1
3,278,554	-				-0.2
3,278,554	-				-1.2
3,278,554	-				+0.1
3,278,554	-				-0.1
3,278,554	-				+0.5
3,278,554	-				-1.3
3,278,554	-				+0.8
3,278,554	-				-0.6
3,278,556	-				+0.3
3,278,568	+				-0.3
3,278,568	+				-1.7
3,278,576	-				+0.7
3,278,576	-				-1.0
3,278,576	-				-1.3
3,278,576	-				-0.6
3,278,621	+		GFF3222	0.13	-0.8
3,278,621	+		GFF3222	0.13	-1.2
3,278,629	+		GFF3222	0.13	+1.6
3,278,629	+		GFF3222	0.13	-1.8
3,278,629	-		GFF3222	0.13	-0.9
3,278,661	+		GFF3222	0.16	-1.3
3,278,661	+		GFF3222	0.16	-0.3
3,278,661	+		GFF3222	0.16	-1.0
3,278,661	+		GFF3222	0.16	+0.7
3,278,661	+		GFF3222	0.16	+0.3
3,278,661	+		GFF3222	0.16	+0.4
3,278,661	+		GFF3222	0.16	-0.7
3,278,661	+		GFF3222	0.16	+0.1
3,278,661	+		GFF3222	0.16	-1.6
3,278,669	-		GFF3222	0.17	-0.2
3,278,669	-		GFF3222	0.17	-0.5
3,278,669	-		GFF3222	0.17	-1.4
3,278,669	-		GFF3222	0.17	-0.9
3,278,669	-		GFF3222	0.17	-0.1
3,278,673	+		GFF3222	0.17	-0.5
3,278,675	+		GFF3222	0.17	-0.0
3,278,675	+		GFF3222	0.17	-2.4
3,278,681	-		GFF3222	0.18	+1.0
3,278,711	-		GFF3222	0.20	+0.4
3,278,713	+		GFF3222	0.20	-1.5
3,278,721	-		GFF3222	0.21	-1.8
3,278,743	+		GFF3222	0.23	-0.6
3,278,743	+		GFF3222	0.23	-0.1
3,278,743	+		GFF3222	0.23	+0.3
3,278,751	-		GFF3222	0.23	-0.3
3,278,751	-		GFF3222	0.23	+0.4
3,278,751	-		GFF3222	0.23	-0.8
3,278,752	-		GFF3222	0.24	+0.2
3,278,752	-		GFF3222	0.24	+1.5
3,278,752	-		GFF3222	0.24	-0.6
3,278,762	-		GFF3222	0.24	-0.1
3,278,777	+		GFF3222	0.26	-0.6
3,278,777	+		GFF3222	0.26	-0.7
3,278,784	+		GFF3222	0.26	-0.8
3,278,785	-		GFF3222	0.26	+0.2
3,278,785	-		GFF3222	0.26	+0.8
3,278,789	+		GFF3222	0.27	+0.3
3,278,792	-		GFF3222	0.27	+1.1
3,278,792	-		GFF3222	0.27	-0.9
3,278,792	-		GFF3222	0.27	+1.4
3,278,792	-		GFF3222	0.27	-0.3
3,278,792	-		GFF3222	0.27	-1.1
3,278,792	-		GFF3222	0.27	+0.2
3,278,836	+		GFF3222	0.30	-0.7
3,278,842	+		GFF3222	0.31	+0.6
3,278,843	+		GFF3222	0.31	-1.6
3,278,847	+		GFF3222	0.31	-0.2
3,278,847	+		GFF3222	0.31	-0.3
3,278,849	+		GFF3222	0.32	-0.6
3,278,849	+		GFF3222	0.32	-1.9
3,278,849	+		GFF3222	0.32	+0.2
3,278,849	+		GFF3222	0.32	-2.1
3,278,857	-		GFF3222	0.32	-1.5
3,278,857	-		GFF3222	0.32	+0.4
3,278,857	-		GFF3222	0.32	+1.1
3,278,857	-		GFF3222	0.32	-0.0
3,278,857	-		GFF3222	0.32	+0.4
3,278,857	-		GFF3222	0.32	-1.7
3,278,860	-		GFF3222	0.32	+0.6
3,278,867	+		GFF3222	0.33	-2.5
3,278,868	+		GFF3222	0.33	+1.3
3,278,868	+		GFF3222	0.33	-1.3
3,278,868	+		GFF3222	0.33	-0.5
3,278,868	+		GFF3222	0.33	-0.7
3,278,896	+		GFF3222	0.35	-0.5
3,278,897	+		GFF3222	0.35	+0.5
3,278,898	+		GFF3222	0.36	-1.3
3,278,904	-		GFF3222	0.36	+0.1
3,278,904	-		GFF3222	0.36	-0.8
3,278,908	+		GFF3222	0.36	-0.2
3,278,908	+		GFF3222	0.36	-1.1
3,278,908	+		GFF3222	0.36	-1.4
3,278,911	-		GFF3222	0.37	-0.0
3,278,911	-		GFF3222	0.37	-0.3
3,278,916	-		GFF3222	0.37	-0.3
3,279,007	-		GFF3222	0.45	-0.1
3,279,017	-		GFF3222	0.45	+0.3
3,279,305	-		GFF3222	0.69	-0.2
3,279,345	+		GFF3222	0.72	-2.3
3,279,353	-		GFF3222	0.73	-0.0
3,279,354	+		GFF3222	0.73	+0.5
3,279,377	+		GFF3222	0.75	-0.6
3,279,389	-		GFF3222	0.76	+0.3
3,279,392	-		GFF3222	0.76	+0.1
3,279,399	-		GFF3222	0.77	-0.3
3,279,400	-		GFF3222	0.77	-0.9
3,279,410	-		GFF3222	0.78	-0.6
3,279,410	-		GFF3222	0.78	-1.0
3,279,414	+		GFF3222	0.78	+0.4
3,279,414	+		GFF3222	0.78	-1.4
3,279,415	+		GFF3222	0.78	-1.6
3,279,431	+		GFF3222	0.80	+0.3
3,279,432	+		GFF3222	0.80	+0.2
3,279,449	+		GFF3222	0.81	-0.0
3,279,503	-		GFF3222	0.85	-0.2
3,279,506	+		GFF3222	0.86	-1.1
3,279,511	+		GFF3222	0.86	+0.5
3,279,511	+		GFF3222	0.86	+0.1
3,279,511	+		GFF3222	0.86	+0.7
3,279,511	+		GFF3222	0.86	-0.9
3,279,511	+		GFF3222	0.86	-1.2
3,279,511	+		GFF3222	0.86	-0.7
3,279,511	+		GFF3222	0.86	-0.5
3,279,511	+		GFF3222	0.86	-0.8
3,279,511	+		GFF3222	0.86	-0.6
3,279,511	+		GFF3222	0.86	-0.7
3,279,511	+		GFF3222	0.86	-0.3
3,279,511	+		GFF3222	0.86	-2.3
3,279,511	+		GFF3222	0.86	-0.4
3,279,511	+		GFF3222	0.86	-0.2
3,279,511	+		GFF3222	0.86	+0.8
3,279,511	+		GFF3222	0.86	+0.1
3,279,511	+		GFF3222	0.86	-1.2
3,279,511	+		GFF3222	0.86	-0.3
3,279,511	+		GFF3222	0.86	-0.2
3,279,511	+		GFF3222	0.86	-1.2
3,279,511	+		GFF3222	0.86	+0.5
3,279,511	+		GFF3222	0.86	-0.3
3,279,514	-		GFF3222	0.86	-1.4
3,279,516	+		GFF3222	0.87	-2.0
3,279,516	+		GFF3222	0.87	-1.4
3,279,519	-		GFF3222	0.87	-0.6
3,279,519	-		GFF3222	0.87	+1.3
3,279,519	-		GFF3222	0.87	-1.1
3,279,519	-		GFF3222	0.87	+0.1
3,279,519	-		GFF3222	0.87	-0.0
3,279,519	-		GFF3222	0.87	+0.2
3,279,519	-		GFF3222	0.87	-0.5
3,279,519	-		GFF3222	0.87	-0.5
3,279,519	-		GFF3222	0.87	+0.7
3,279,519	-		GFF3222	0.87	-1.5
3,279,519	-		GFF3222	0.87	+0.9
3,279,519	-		GFF3222	0.87	+0.3
3,279,519	-		GFF3222	0.87	+0.3
3,279,519	-		GFF3222	0.87	-1.3
3,279,519	-		GFF3222	0.87	+0.8
3,279,519	-		GFF3222	0.87	+1.0
3,279,519	-		GFF3222	0.87	-0.3
3,279,519	-		GFF3222	0.87	+0.5
3,279,519	-		GFF3222	0.87	+0.5
3,279,524	-		GFF3222	0.87	-0.6
3,279,524	-		GFF3222	0.87	+0.2
3,279,529	-		GFF3222	0.88	-1.5
3,279,529	-		GFF3222	0.88	+0.2
3,279,531	+		GFF3222	0.88	-1.4
3,279,531	+		GFF3222	0.88	-1.3
3,279,533	+		GFF3222	0.88	+0.6
3,279,533	+		GFF3222	0.88	+0.2
3,279,541	-		GFF3222	0.89	-0.8
3,279,542	-		GFF3222	0.89	+1.0
3,279,576	+				-0.2
3,279,576	+				-0.3
3,279,576	+				-0.2
3,279,576	+				-0.8
3,279,576	+				-0.1
3,279,576	-				-2.5
3,279,584	-				+0.2
3,279,593	+				-1.5
3,279,593	+				-0.2
3,279,601	-				-0.2
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