Strain Fitness in Sphingobium sp. HT1-2 around GFF3218

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,273,399	+				-0.5
3,273,410	-				-0.8
3,273,447	+				-0.4
3,273,447	+				+0.3
3,273,457	+				+0.3
3,273,457	+				+0.7
3,273,514	+				+0.2
3,273,537	+		GFF3217	0.12	+0.4
3,273,537	+		GFF3217	0.12	-1.3
3,273,545	-		GFF3217	0.13	-0.6
3,273,545	-		GFF3217	0.13	-1.1
3,273,555	-		GFF3217	0.14	-0.4
3,273,559	-		GFF3217	0.14	-1.8
3,273,567	-		GFF3217	0.15	-1.8
3,273,588	+		GFF3217	0.17	+0.7
3,273,604	+		GFF3217	0.19	+1.2
3,273,612	-		GFF3217	0.20	+0.2
3,273,659	+		GFF3217	0.24	+0.8
3,273,721	-		GFF3217	0.31	-1.9
3,273,733	+		GFF3217	0.32	-0.7
3,273,733	+		GFF3217	0.32	-0.1
3,273,736	-		GFF3217	0.32	-1.7
3,273,741	-		GFF3217	0.33	-1.4
3,273,741	-		GFF3217	0.33	-0.3
3,273,741	-		GFF3217	0.33	-1.7
3,273,741	-		GFF3217	0.33	+1.8
3,273,797	+		GFF3217	0.38	+0.7
3,273,813	+		GFF3217	0.40	-0.2
3,273,818	+		GFF3217	0.41	-0.1
3,273,831	+		GFF3217	0.42	-2.2
3,273,895	-		GFF3217	0.48	-2.2
3,273,906	+		GFF3217	0.49	-0.6
3,273,906	+		GFF3217	0.49	-1.5
3,273,913	-		GFF3217	0.50	-2.0
3,273,965	-		GFF3217	0.55	+0.1
3,273,970	-		GFF3217	0.56	-0.8
3,274,019	-		GFF3217	0.61	-0.5
3,274,020	+		GFF3217	0.61	-0.5
3,274,030	+		GFF3217	0.62	+0.9
3,274,038	-		GFF3217	0.63	-1.5
3,274,052	+		GFF3217	0.64	-1.3
3,274,067	+		GFF3217	0.66	-0.3
3,274,122	+		GFF3217	0.71	-0.4
3,274,198	+		GFF3217	0.79	-0.6
3,274,271	-		GFF3217	0.86	-0.3
3,274,322	-				-0.4
3,274,379	+				-1.0
3,274,379	+				-1.0
3,274,393	-				-0.5
3,274,401	+				-0.5
3,274,401	+				-0.8
3,274,401	+				-1.3
3,274,409	-				-0.8
3,274,423	+		GFF3218	0.14	+0.4
3,274,431	-		GFF3218	0.18	-1.4
3,274,443	+		GFF3218	0.24	+0.3
3,274,474	-		GFF3218	0.40	+0.8
3,274,474	-		GFF3218	0.40	-0.5
3,274,489	+		GFF3218	0.48	-2.0
3,274,489	-		GFF3218	0.48	-3.1
3,274,504	+		GFF3218	0.55	+1.2
3,274,507	-		GFF3218	0.57	-0.5
3,274,507	-		GFF3218	0.57	-0.4
3,274,509	+		GFF3218	0.58	+0.3
3,274,512	-		GFF3218	0.59	+0.1
3,274,514	+		GFF3218	0.61	-0.6
3,274,519	-		GFF3218	0.63	-0.4
3,274,524	-		GFF3218	0.66	-0.6
3,274,538	+		GFF3218	0.73	-1.1
3,274,546	-		GFF3218	0.77	+1.1
3,274,591	+				-0.6
3,274,772	+				-0.4
3,274,772	+				+0.7
3,274,774	-				-0.0
3,274,780	-				-2.2
3,274,780	-				+0.1
3,274,780	-				+0.0
3,274,782	+				-1.1
3,274,785	-				+0.9
3,274,792	+				+0.9
3,274,795	-				+1.3
3,274,800	+				+0.1
3,274,800	+				+0.5
3,274,807	+				-0.5
3,274,813	-				+0.1
3,274,817	+				+0.2
3,274,817	+				+0.3
3,274,827	+				-0.4
3,274,827	+				-1.5
3,274,853	-				+1.2
3,274,857	+				-0.4
3,274,860	-				-0.3
3,274,860	-				+1.2
3,274,864	-				-1.9
3,274,872	-				-1.3
3,274,884	-				-0.5
3,274,913	+		GFF3220	0.10	-0.6
3,274,917	+		GFF3220	0.11	-0.5
3,274,921	-		GFF3220	0.11	+2.0
3,274,922	+		GFF3220	0.11	-0.1
3,274,922	+		GFF3220	0.11	+0.7
3,274,922	+		GFF3220	0.11	+0.6
3,274,922	+		GFF3220	0.11	+1.0
3,274,922	+		GFF3220	0.11	+0.1
3,274,923	+		GFF3220	0.11	+0.9
3,274,923	+		GFF3220	0.11	+1.1
3,274,923	-		GFF3220	0.11	+1.4
3,274,923	-		GFF3220	0.11	+0.6
3,274,923	-		GFF3220	0.11	+0.5
3,274,923	-		GFF3220	0.11	-0.7
3,274,925	+		GFF3220	0.11	-0.0
3,274,925	-		GFF3220	0.11	-1.2
3,274,925	-		GFF3220	0.11	-0.2
3,274,930	-		GFF3220	0.12	+0.5
3,274,930	-		GFF3220	0.12	-0.2
3,274,930	-		GFF3220	0.12	-0.9
3,274,930	-		GFF3220	0.12	-0.4
3,274,930	-		GFF3220	0.12	-1.5
3,274,930	-		GFF3220	0.12	-0.3
3,274,930	-		GFF3220	0.12	+0.5
3,274,930	-		GFF3220	0.12	-0.1
3,274,930	-		GFF3220	0.12	-0.7
3,274,930	-		GFF3220	0.12	-1.3
3,274,931	-		GFF3220	0.12	+0.5
3,274,931	-		GFF3220	0.12	+0.5
3,274,931	-		GFF3220	0.12	+0.2
3,274,932	+		GFF3220	0.12	+0.0
3,274,932	+		GFF3220	0.12	-3.4
3,274,932	+		GFF3220	0.12	-0.6
3,274,935	-		GFF3220	0.12	-1.0
3,274,940	-		GFF3220	0.13	-0.2
3,274,940	-		GFF3220	0.13	+0.3
3,274,947	+		GFF3220	0.13	+0.1
3,274,951	+		GFF3220	0.14	-0.9
3,274,955	-		GFF3220	0.14	+0.2
3,274,961	+		GFF3220	0.15	-0.5
3,274,961	+		GFF3220	0.15	+1.3
3,274,961	+		GFF3220	0.15	-1.2
3,274,961	+		GFF3220	0.15	+0.5
3,274,969	-		GFF3220	0.15	-0.9
3,274,990	+		GFF3220	0.17	-0.6
3,274,992	+		GFF3220	0.17	-0.2
3,274,998	-		GFF3220	0.18	+0.8
3,274,998	-		GFF3220	0.18	-0.8
3,274,998	-		GFF3220	0.18	+0.9
3,275,000	-		GFF3220	0.18	+1.5
3,275,005	-		GFF3220	0.18	-0.5
3,275,013	-		GFF3220	0.19	-0.9
3,275,019	+		GFF3220	0.20	-1.2
3,275,019	+		GFF3220	0.20	-0.4
3,275,019	+		GFF3220	0.20	-0.6
3,275,027	-		GFF3220	0.20	+0.5
3,275,027	-		GFF3220	0.20	-0.3
3,275,027	-		GFF3220	0.20	-1.8
3,275,027	-		GFF3220	0.20	+0.6
3,275,038	+		GFF3220	0.21	-0.8
3,275,038	+		GFF3220	0.21	+1.0
3,275,046	-		GFF3220	0.22	-0.4
3,275,047	+		GFF3220	0.22	-0.4
3,275,056	-		GFF3220	0.23	-0.1
3,275,067	-		GFF3220	0.24	-0.2
3,275,100	+		GFF3220	0.27	+1.3
3,275,100	+		GFF3220	0.27	-0.4
3,275,100	+		GFF3220	0.27	-1.5
3,275,103	+		GFF3220	0.27	-0.7
3,275,103	+		GFF3220	0.27	-1.1
3,275,108	-		GFF3220	0.27	+0.4
3,275,139	+		GFF3220	0.30	+1.0
3,275,140	+		GFF3220	0.30	+0.4
3,275,140	+		GFF3220	0.30	+0.3
3,275,140	+		GFF3220	0.30	-1.4
3,275,140	+		GFF3220	0.30	+0.9
3,275,140	+		GFF3220	0.30	+0.9
3,275,140	+		GFF3220	0.30	-0.2
3,275,148	-		GFF3220	0.31	-0.5
3,275,148	-		GFF3220	0.31	-2.2
3,275,148	-		GFF3220	0.31	-2.0
3,275,148	-		GFF3220	0.31	-1.0
3,275,148	-		GFF3220	0.31	+0.4
3,275,148	-		GFF3220	0.31	+0.8
3,275,148	-		GFF3220	0.31	+0.6
3,275,148	-		GFF3220	0.31	+0.1
3,275,158	-		GFF3220	0.32	+0.4
3,275,162	-		GFF3220	0.32	-1.6
3,275,164	+		GFF3220	0.32	-0.6
3,275,164	+		GFF3220	0.32	-1.2
3,275,172	-		GFF3220	0.33	+0.7
3,275,172	-		GFF3220	0.33	+0.5
3,275,172	-		GFF3220	0.33	-1.3
3,275,210	-		GFF3220	0.36	-0.9
3,275,210	-		GFF3220	0.36	+1.3
3,275,215	+		GFF3220	0.37	-1.3
3,275,216	+		GFF3220	0.37	+1.0
3,275,223	+		GFF3220	0.38	-1.9
3,275,223	+		GFF3220	0.38	+0.4
3,275,224	-		GFF3220	0.38	+0.8
3,275,229	-		GFF3220	0.38	-0.5
3,275,231	+		GFF3220	0.38	-2.6
3,275,231	+		GFF3220	0.38	-0.6
3,275,231	+		GFF3220	0.38	-0.7
3,275,231	+		GFF3220	0.38	+0.7
3,275,231	-		GFF3220	0.38	-1.1
3,275,239	-		GFF3220	0.39	-0.1
3,275,239	-		GFF3220	0.39	+0.1
3,275,239	-		GFF3220	0.39	-0.6
3,275,250	+		GFF3220	0.40	+1.2
3,275,250	+		GFF3220	0.40	+1.1
3,275,251	-		GFF3220	0.40	+0.2
3,275,256	-		GFF3220	0.40	-1.7
3,275,256	-		GFF3220	0.40	+0.3
3,275,275	+		GFF3220	0.42	-0.2
3,275,275	+		GFF3220	0.42	-0.1
3,275,275	+		GFF3220	0.42	+0.6
3,275,275	+		GFF3220	0.42	-1.8
3,275,275	+		GFF3220	0.42	-1.7
3,275,275	+		GFF3220	0.42	-2.8
3,275,283	-		GFF3220	0.43	-1.5
3,275,283	-		GFF3220	0.43	-1.1
3,275,283	-		GFF3220	0.43	+0.4
3,275,307	-		GFF3220	0.45	-1.9
3,275,316	+		GFF3220	0.46	-0.4
3,275,330	+		GFF3220	0.47	-0.6
3,275,330	+		GFF3220	0.47	-1.8
3,275,330	+		GFF3220	0.47	+0.1
3,275,330	+		GFF3220	0.47	-0.2
3,275,330	+		GFF3220	0.47	-1.7
3,275,330	+		GFF3220	0.47	-0.4
3,275,330	+		GFF3220	0.47	-1.8
3,275,330	+		GFF3220	0.47	+0.8
3,275,330	+		GFF3220	0.47	+0.3
3,275,330	+		GFF3220	0.47	-1.9
3,275,330	+		GFF3220	0.47	-0.2
3,275,330	+		GFF3220	0.47	-0.1
3,275,330	+		GFF3220	0.47	-0.7
3,275,330	+		GFF3220	0.47	+0.1
3,275,330	+		GFF3220	0.47	-1.3
3,275,330	+		GFF3220	0.47	-1.2
3,275,333	-		GFF3220	0.47	-0.1
3,275,335	+		GFF3220	0.47	+1.3
3,275,338	-		GFF3220	0.48	-1.3
3,275,338	-		GFF3220	0.48	+0.2
3,275,338	-		GFF3220	0.48	+0.5
3,275,338	-		GFF3220	0.48	-0.5
3,275,338	-		GFF3220	0.48	-0.3
3,275,338	-		GFF3220	0.48	+1.6
3,275,338	-		GFF3220	0.48	+0.8
3,275,338	-		GFF3220	0.48	-0.5
3,275,338	-		GFF3220	0.48	-0.0
3,275,338	-		GFF3220	0.48	+0.7
3,275,338	-		GFF3220	0.48	+0.3
3,275,338	-		GFF3220	0.48	-0.1
3,275,338	-		GFF3220	0.48	+0.1
3,275,338	-		GFF3220	0.48	-2.2
3,275,338	-		GFF3220	0.48	-0.4
3,275,338	-		GFF3220	0.48	+0.5
3,275,338	-		GFF3220	0.48	+0.1
3,275,343	-		GFF3220	0.48	-1.0
3,275,359	+		GFF3220	0.49	-0.2
3,275,374	-		GFF3220	0.51	-1.4
3,275,398	+		GFF3220	0.53	-1.2
3,275,398	+		GFF3220	0.53	-0.6
3,275,406	-		GFF3220	0.54	-1.4
3,275,406	-		GFF3220	0.54	+0.0
3,275,406	-		GFF3220	0.54	-1.4
3,275,406	-		GFF3220	0.54	-2.3
3,275,419	+		GFF3220	0.55	+0.3
3,275,427	-		GFF3220	0.55	-2.2
3,275,430	+		GFF3220	0.56	+0.4
3,275,438	-		GFF3220	0.56	+0.1
3,275,476	-		GFF3220	0.60	-0.2
3,275,476	-		GFF3220	0.60	-1.8
3,275,487	+		GFF3220	0.61	+0.3
3,275,492	+		GFF3220	0.61	+0.5
3,275,492	+		GFF3220	0.61	+0.4
3,275,492	+		GFF3220	0.61	+0.2
3,275,492	+		GFF3220	0.61	-0.7
3,275,492	+		GFF3220	0.61	-0.5
3,275,492	+		GFF3220	0.61	+0.5
3,275,492	+		GFF3220	0.61	-0.4
3,275,492	+		GFF3220	0.61	-1.1
3,275,492	+		GFF3220	0.61	-0.9
3,275,492	+		GFF3220	0.61	+0.6
3,275,492	+		GFF3220	0.61	+1.1
3,275,492	+		GFF3220	0.61	-0.8
3,275,492	+		GFF3220	0.61	-0.2
3,275,492	+		GFF3220	0.61	+0.6
3,275,494	+		GFF3220	0.61	+0.8
3,275,494	+		GFF3220	0.61	-0.6
3,275,494	+		GFF3220	0.61	-0.8
3,275,495	-		GFF3220	0.61	+0.6
3,275,496	+		GFF3220	0.61	-0.9
3,275,500	-		GFF3220	0.62	-2.0
3,275,500	-		GFF3220	0.62	+0.7
3,275,500	-		GFF3220	0.62	-1.8
3,275,500	-		GFF3220	0.62	-0.2
3,275,500	-		GFF3220	0.62	-0.2
3,275,500	-		GFF3220	0.62	+0.5
3,275,500	-		GFF3220	0.62	-2.2
3,275,500	-		GFF3220	0.62	+0.8
3,275,500	-		GFF3220	0.62	+1.8
3,275,500	-		GFF3220	0.62	-0.2
3,275,500	-		GFF3220	0.62	-0.6
3,275,502	-		GFF3220	0.62	-0.4
3,275,502	-		GFF3220	0.62	+0.1
3,275,563	-		GFF3220	0.67	-0.3
3,275,567	+		GFF3220	0.68	+0.9
3,275,567	+		GFF3220	0.68	+1.7
3,275,567	+		GFF3220	0.68	-0.8
3,275,567	+		GFF3220	0.68	+0.8
3,275,567	+		GFF3220	0.68	-0.5
3,275,575	-		GFF3220	0.68	-1.4
3,275,575	-		GFF3220	0.68	-0.2
3,275,575	-		GFF3220	0.68	-0.6
3,275,575	-		GFF3220	0.68	-1.2
3,275,575	-		GFF3220	0.68	-0.8
3,275,575	-		GFF3220	0.68	+0.6
3,275,575	-		GFF3220	0.68	+1.1
3,275,575	-		GFF3220	0.68	-2.2
3,275,575	-		GFF3220	0.68	-0.1