Strain Fitness in Sphingobium sp. HT1-2 around GFF3195

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,253,739	+		GFF3193	0.83	+0.1
3,253,899	+				-1.9
3,253,917	+				-1.1
3,253,917	+				+0.3
3,253,918	+				-1.6
3,253,928	+				-0.5
3,253,943	+				-0.4
3,253,945	+				-1.5
3,253,945	+				-2.3
3,253,970	+				+1.1
3,253,987	-				-1.4
3,254,028	+				-1.7
3,254,028	-				-0.9
3,254,031	+				-0.3
3,254,031	+				-0.7
3,254,048	+				-0.4
3,254,065	+				-1.7
3,254,065	-				-0.3
3,254,073	-				-0.1
3,254,083	-				-1.8
3,254,086	+				+0.6
3,254,114	+				-2.5
3,254,114	+				-1.0
3,254,117	+				-1.1
3,254,119	+				+0.1
3,254,119	+				+0.0
3,254,119	+				-0.7
3,254,119	+				-1.0
3,254,127	-				+0.3
3,254,128	+				+0.6
3,254,538	-		GFF3194	0.88	-0.1
3,254,538	-		GFF3194	0.88	-1.1
3,254,547	+				+1.1
3,254,547	+				-0.8
3,254,547	+				+0.6
3,254,555	-				+0.5
3,254,555	-				-1.4
3,254,555	-				-0.4
3,254,614	+				-2.0
3,254,637	-				+0.3
3,254,656	-				-0.1
3,254,666	-				-0.3
3,254,674	+				+1.5
3,254,674	+				-1.7
3,254,674	+				+0.7
3,254,674	+				+1.3
3,254,674	+				-1.0
3,254,680	+				-0.4
3,254,682	-				-1.1
3,254,682	-				-1.4
3,254,682	-				+0.3
3,254,682	-				-0.7
3,254,705	+				+0.1
3,254,710	+				+0.3
3,254,713	-				-0.1
3,254,718	-				+0.2
3,254,730	+				-0.5
3,254,750	+				+0.8
3,254,760	+				-0.2
3,254,765	-				-0.5
3,254,768	-				+0.1
3,254,777	+				+0.2
3,254,777	+				-0.4
3,254,778	+				+0.4
3,254,783	+				-0.5
3,254,861	-				-0.6
3,254,865	-				-0.7
3,254,869	-				+0.7
3,254,871	-				+0.4
3,254,888	-				-3.0
3,254,888	-				+0.9
3,254,931	+		GFF3195	0.11	-1.4
3,254,944	+		GFF3195	0.11	-1.0
3,254,952	-		GFF3195	0.12	+0.4
3,254,971	+		GFF3195	0.13	+0.2
3,254,974	-		GFF3195	0.13	-0.2
3,254,979	-		GFF3195	0.13	-0.4
3,254,982	+		GFF3195	0.13	+0.0
3,255,000	+		GFF3195	0.14	+0.0
3,255,039	+		GFF3195	0.16	+0.7
3,255,046	+		GFF3195	0.16	-0.9
3,255,051	+		GFF3195	0.16	+1.3
3,255,056	+		GFF3195	0.17	-0.1
3,255,104	+		GFF3195	0.19	-0.6
3,255,104	+		GFF3195	0.19	-1.7
3,255,111	+		GFF3195	0.19	-1.9
3,255,112	-		GFF3195	0.19	-0.3
3,255,112	-		GFF3195	0.19	+0.3
3,255,117	-		GFF3195	0.19	-2.1
3,255,137	+		GFF3195	0.20	-0.5
3,255,142	+		GFF3195	0.20	+1.3
3,255,145	-		GFF3195	0.21	+0.6
3,255,145	-		GFF3195	0.21	-1.7
3,255,145	-		GFF3195	0.21	+0.9
3,255,145	-		GFF3195	0.21	+1.2
3,255,145	-		GFF3195	0.21	+0.3
3,255,168	+		GFF3195	0.22	+1.4
3,255,171	-		GFF3195	0.22	-0.9
3,255,182	+		GFF3195	0.22	+0.1
3,255,190	-		GFF3195	0.23	-0.5
3,255,190	-		GFF3195	0.23	-0.9
3,255,218	+		GFF3195	0.24	-0.6
3,255,241	+		GFF3195	0.25	-1.1
3,255,241	+		GFF3195	0.25	-0.5
3,255,249	-		GFF3195	0.25	-0.8
3,255,249	-		GFF3195	0.25	+0.3
3,255,257	-		GFF3195	0.26	+0.2
3,255,257	-		GFF3195	0.26	-0.4
3,255,312	-		GFF3195	0.28	+0.5
3,255,319	-		GFF3195	0.28	+1.3
3,255,342	-		GFF3195	0.29	-1.1
3,255,353	+		GFF3195	0.30	-1.4
3,255,353	+		GFF3195	0.30	-1.9
3,255,368	+		GFF3195	0.31	-1.8
3,255,387	-		GFF3195	0.32	+0.3
3,255,401	-		GFF3195	0.32	+0.3
3,255,435	-		GFF3195	0.34	+0.4
3,255,445	+		GFF3195	0.34	+0.6
3,255,453	-		GFF3195	0.35	+0.4
3,255,460	+		GFF3195	0.35	+0.4
3,255,470	+		GFF3195	0.35	+0.8
3,255,476	+		GFF3195	0.36	+1.4
3,255,481	+		GFF3195	0.36	-1.4
3,255,484	-		GFF3195	0.36	-1.5
3,255,489	-		GFF3195	0.36	-0.4
3,255,489	-		GFF3195	0.36	-0.0
3,255,490	+		GFF3195	0.36	-2.1
3,255,490	-		GFF3195	0.36	+0.9
3,255,498	-		GFF3195	0.37	-0.5
3,255,516	+		GFF3195	0.37	+0.5
3,255,518	-		GFF3195	0.37	-2.3
3,255,520	+		GFF3195	0.38	-1.4
3,255,520	+		GFF3195	0.38	-1.3
3,255,524	-		GFF3195	0.38	+0.1
3,255,535	+		GFF3195	0.38	+1.2
3,255,543	-		GFF3195	0.39	-0.9
3,255,543	-		GFF3195	0.39	+0.6
3,255,563	+		GFF3195	0.39	-0.9
3,255,578	+		GFF3195	0.40	-1.1
3,255,578	-		GFF3195	0.40	-1.1
3,255,584	+		GFF3195	0.40	+0.0
3,255,587	-		GFF3195	0.41	-1.0
3,255,587	-		GFF3195	0.41	+0.4
3,255,587	-		GFF3195	0.41	-1.0
3,255,587	-		GFF3195	0.41	-0.2
3,255,592	-		GFF3195	0.41	-0.1
3,255,592	-		GFF3195	0.41	+0.8
3,255,599	+		GFF3195	0.41	+0.8
3,255,599	+		GFF3195	0.41	+0.1
3,255,607	-		GFF3195	0.41	+0.9
3,255,635	-		GFF3195	0.43	-1.5
3,255,646	+		GFF3195	0.43	-0.8
3,255,646	+		GFF3195	0.43	-0.0
3,255,646	+		GFF3195	0.43	+0.4
3,255,646	+		GFF3195	0.43	-0.5
3,255,646	+		GFF3195	0.43	+0.1
3,255,646	+		GFF3195	0.43	+0.6
3,255,647	-		GFF3195	0.43	+0.0
3,255,654	-		GFF3195	0.44	-0.6
3,255,654	-		GFF3195	0.44	+0.4
3,255,654	-		GFF3195	0.44	+0.0
3,255,654	-		GFF3195	0.44	-1.1
3,255,654	-		GFF3195	0.44	-0.1
3,255,654	-		GFF3195	0.44	-1.4
3,255,661	-		GFF3195	0.44	-0.6
3,255,698	-		GFF3195	0.46	-0.9
3,255,715	+		GFF3195	0.46	-0.1
3,255,715	+		GFF3195	0.46	-0.3
3,255,723	-		GFF3195	0.47	+0.7
3,255,725	+		GFF3195	0.47	+0.8
3,255,803	+		GFF3195	0.50	-1.5
3,255,813	+		GFF3195	0.51	+0.1
3,255,834	+		GFF3195	0.52	+0.1
3,255,842	-		GFF3195	0.52	-2.6
3,255,842	-		GFF3195	0.52	-0.5
3,255,885	+		GFF3195	0.54	-0.7
3,255,902	-		GFF3195	0.55	-1.6
3,255,923	+		GFF3195	0.56	-1.6
3,255,928	+		GFF3195	0.56	+2.2
3,255,950	-		GFF3195	0.57	-2.5
3,255,950	-		GFF3195	0.57	-0.3
3,255,964	+		GFF3195	0.58	-1.6
3,256,006	-		GFF3195	0.60	-0.5
3,256,026	+		GFF3195	0.60	+0.2
3,256,026	-		GFF3195	0.60	-1.1
3,256,040	+		GFF3195	0.61	+0.7
3,256,045	+		GFF3195	0.61	+0.7
3,256,056	+		GFF3195	0.62	-1.5
3,256,064	-		GFF3195	0.62	-1.2
3,256,064	-		GFF3195	0.62	-0.3
3,256,069	+		GFF3195	0.62	+0.7
3,256,089	+		GFF3195	0.63	-1.5
3,256,097	-		GFF3195	0.64	-0.5
3,256,099	+		GFF3195	0.64	-0.9
3,256,107	-		GFF3195	0.64	+0.9
3,256,107	-		GFF3195	0.64	-2.4
3,256,107	-		GFF3195	0.64	-0.5
3,256,110	-		GFF3195	0.64	+0.3
3,256,118	-		GFF3195	0.65	-2.3
3,256,147	+		GFF3195	0.66	+1.3
3,256,157	+		GFF3195	0.66	-1.3
3,256,164	-		GFF3195	0.67	-1.0
3,256,167	+		GFF3195	0.67	-0.3
3,256,167	+		GFF3195	0.67	-1.1
3,256,170	-		GFF3195	0.67	-0.3
3,256,175	-		GFF3195	0.67	-2.1
3,256,181	+		GFF3195	0.67	-1.0
3,256,184	-		GFF3195	0.68	+0.0
3,256,192	+		GFF3195	0.68	-1.7
3,256,216	-		GFF3195	0.69	-0.3
3,256,255	-		GFF3195	0.71	-0.4
3,256,255	-		GFF3195	0.71	+0.4
3,256,257	+		GFF3195	0.71	-0.3
3,256,257	+		GFF3195	0.71	+0.2
3,256,257	+		GFF3195	0.71	-1.3
3,256,257	+		GFF3195	0.71	+0.8
3,256,257	+		GFF3195	0.71	+0.1
3,256,257	+		GFF3195	0.71	-2.0
3,256,257	+		GFF3195	0.71	-0.5
3,256,257	+		GFF3195	0.71	-0.6
3,256,257	+		GFF3195	0.71	+0.1
3,256,257	+		GFF3195	0.71	-0.4
3,256,257	+		GFF3195	0.71	+0.4
3,256,257	+		GFF3195	0.71	+0.4
3,256,257	+		GFF3195	0.71	-0.5
3,256,257	+		GFF3195	0.71	+0.7
3,256,257	+		GFF3195	0.71	-0.3
3,256,262	+		GFF3195	0.71	+0.3
3,256,262	+		GFF3195	0.71	+0.8
3,256,265	-		GFF3195	0.71	+0.0
3,256,265	-		GFF3195	0.71	+1.3
3,256,265	-		GFF3195	0.71	+0.5
3,256,265	-		GFF3195	0.71	+0.4
3,256,265	-		GFF3195	0.71	-1.3
3,256,265	-		GFF3195	0.71	-0.9
3,256,265	-		GFF3195	0.71	-0.9
3,256,265	-		GFF3195	0.71	-1.0
3,256,265	-		GFF3195	0.71	-1.4
3,256,265	-		GFF3195	0.71	+0.3
3,256,265	-		GFF3195	0.71	-1.9
3,256,265	-		GFF3195	0.71	+0.2
3,256,265	-		GFF3195	0.71	+0.4
3,256,265	-		GFF3195	0.71	+0.3
3,256,265	-		GFF3195	0.71	+0.5
3,256,265	-		GFF3195	0.71	-0.7
3,256,275	-		GFF3195	0.72	-0.6
3,256,318	+		GFF3195	0.74	-0.2
3,256,318	+		GFF3195	0.74	-0.2
3,256,320	-		GFF3195	0.74	+0.7
3,256,326	-		GFF3195	0.74	-0.1
3,256,326	-		GFF3195	0.74	-0.1
3,256,326	-		GFF3195	0.74	-1.3
3,256,397	+		GFF3195	0.77	-1.6
3,256,397	+		GFF3195	0.77	-1.9
3,256,397	+		GFF3195	0.77	+0.6
3,256,402	+		GFF3195	0.77	+0.9
3,256,402	+		GFF3195	0.77	-0.0
3,256,402	+		GFF3195	0.77	-0.6
3,256,402	+		GFF3195	0.77	-1.2
3,256,402	+		GFF3195	0.77	+0.1
3,256,402	+		GFF3195	0.77	+0.8
3,256,402	+		GFF3195	0.77	+0.5
3,256,402	+		GFF3195	0.77	-2.5
3,256,402	+		GFF3195	0.77	-1.8
3,256,402	+		GFF3195	0.77	-0.4
3,256,403	+		GFF3195	0.77	-0.3
3,256,404	+		GFF3195	0.78	+0.2
3,256,405	+		GFF3195	0.78	+0.4
3,256,405	-		GFF3195	0.78	-1.0
3,256,405	-		GFF3195	0.78	-0.7
3,256,405	-		GFF3195	0.78	+0.4
3,256,405	-		GFF3195	0.78	+1.6
3,256,405	-		GFF3195	0.78	-1.5
3,256,410	-		GFF3195	0.78	-2.4
3,256,410	-		GFF3195	0.78	+0.2
3,256,410	-		GFF3195	0.78	-2.4
3,256,420	-		GFF3195	0.78	-0.7
3,256,441	+		GFF3195	0.79	-2.5
3,256,441	+		GFF3195	0.79	+0.7
3,256,441	+		GFF3195	0.79	+0.9
3,256,441	+		GFF3195	0.79	-1.9
3,256,441	+		GFF3195	0.79	-0.0
3,256,449	-		GFF3195	0.80	+0.8
3,256,449	-		GFF3195	0.80	+0.6
3,256,454	+		GFF3195	0.80	-0.9
3,256,454	+		GFF3195	0.80	+0.5
3,256,462	-		GFF3195	0.80	-0.7
3,256,472	-		GFF3195	0.81	-0.7
3,256,490	-		GFF3195	0.81	-1.0
3,256,505	-		GFF3195	0.82	+1.3
3,256,505	-		GFF3195	0.82	+0.8
3,256,518	+		GFF3195	0.83	+0.0
3,256,520	+		GFF3195	0.83	-0.1
3,256,534	-		GFF3195	0.83	+0.6
3,256,559	-		GFF3195	0.85	-0.5
3,256,561	+		GFF3195	0.85	-0.5
3,256,561	+		GFF3195	0.85	-0.4
3,256,569	-		GFF3195	0.85	-0.9
3,256,575	+		GFF3195	0.85	+0.7
3,256,602	+		GFF3195	0.86	+0.2
3,256,602	+		GFF3195	0.86	+0.8
3,256,612	+		GFF3195	0.87	-0.3
3,256,612	+		GFF3195	0.87	-0.6
3,256,612	+		GFF3195	0.87	-2.2
3,256,612	+		GFF3195	0.87	+0.1
3,256,612	+		GFF3195	0.87	+0.6
3,256,615	-		GFF3195	0.87	-2.1
3,256,620	-		GFF3195	0.87	-0.9
3,256,620	-		GFF3195	0.87	-0.8
3,256,620	-		GFF3195	0.87	+0.3
3,256,620	-		GFF3195	0.87	-0.4
3,256,640	+		GFF3195	0.88	+1.1
3,256,662	-		GFF3195	0.89	+0.9
3,256,675	-		GFF3195	0.90	+0.2
3,256,685	-				+0.2
3,256,693	-				+0.9
3,256,709	+				+0.9
3,256,716	+				-1.2
3,256,716	+				-0.7
3,256,717	-				-0.2
3,256,724	-				-1.5
3,256,724	-				-0.7
3,256,774	-				-0.9
3,256,784	-				+0.5
3,256,838	+				-1.4
3,256,843	+				-0.5
3,256,845	+				-0.7
3,256,886	-				-0.6
3,256,898	-				-1.0
3,256,902	-				-0.9
3,256,911	+				+1.0
3,256,911	+				+1.4
3,256,911	+				-1.9
3,256,916	+				+0.1
3,256,919	-				-0.7
3,256,919	-				+0.3
3,256,921	+				-0.5
3,256,931	+				-0.0
3,256,945	-				+0.1
3,256,945	-				-0.4
3,256,949	+				+0.5
3,256,987	+				+0.3
3,257,000	-				+0.9
3,257,002	+				+0.6
3,257,002	+				+0.3
3,257,005	-				-0.4
3,257,007	+				+1.1
3,257,007	+				+0.5
3,257,010	-				-0.0
3,257,010	-				-1.5
3,257,012	+				+0.0
3,257,012	+				+0.6
3,257,012	+				-0.2
3,257,015	-				+1.0
3,257,015	-				+0.5
3,257,020	-				+1.4
3,257,023	+				+0.3
3,257,028	+		GFF3196	0.10	+0.1
3,257,028	+		GFF3196	0.10	+1.1
3,257,034	+		GFF3196	0.11	+1.4
3,257,034	+		GFF3196	0.11	-0.4
3,257,042	-		GFF3196	0.13	+0.5
3,257,042	-		GFF3196	0.13	+0.0
3,257,044	+		GFF3196	0.13	+0.8
3,257,052	-		GFF3196	0.14	-1.5
3,257,053	-		GFF3196	0.14	+0.8
3,257,089	-		GFF3196	0.20	-0.6
3,257,095	-		GFF3196	0.21	-0.7
3,257,099	+		GFF3196	0.22	-0.2
3,257,107	-		GFF3196	0.23	-0.7
3,257,107	-		GFF3196	0.23	+0.1
3,257,137	+		GFF3196	0.28	+1.0
3,257,179	+		GFF3196	0.35	+1.3
3,257,179	+		GFF3196	0.35	-0.7
3,257,186	+		GFF3196	0.36	+1.5
3,257,187	-		GFF3196	0.36	-0.4
3,257,204	+		GFF3196	0.39	-1.0
3,257,235	-		GFF3196	0.44	-0.3
3,257,240	+		GFF3196	0.44	-1.5
3,257,245	+		GFF3196	0.45	+0.3
3,257,248	-		GFF3196	0.46	+0.5
3,257,260	+		GFF3196	0.48	+0.1
3,257,280	+		GFF3196	0.51	+0.7
3,257,288	-		GFF3196	0.52	+0.2
3,257,325	+		GFF3196	0.58	-0.0
3,257,333	-		GFF3196	0.59	-1.0
3,257,338	-		GFF3196	0.60	-0.3
3,257,348	-		GFF3196	0.62	+0.0
3,257,358	+		GFF3196	0.63	-0.5
3,257,359	-		GFF3196	0.64	-1.0
3,257,366	-		GFF3196	0.65	-0.1
3,257,366	-		GFF3196	0.65	-0.0
3,257,377	+		GFF3196	0.67	+0.5
3,257,377	+		GFF3196	0.67	-1.3
3,257,377	+		GFF3196	0.67	+1.3
3,257,384	+		GFF3196	0.68	+1.1
3,257,389	+		GFF3196	0.68	-0.4
3,257,389	+		GFF3196	0.68	-0.1
3,257,392	-		GFF3196	0.69	-1.0
3,257,392	-		GFF3196	0.69	-0.2
3,257,397	-		GFF3196	0.70	+0.7
3,257,411	-		GFF3196	0.72	-1.8
3,257,468	+		GFF3196	0.81	-1.7
3,257,468	+		GFF3196	0.81	-0.1
3,257,468	+		GFF3196	0.81	-0.1
3,257,476	-		GFF3196	0.82	+2.3
3,257,476	-		GFF3196	0.82	-1.5
3,257,509	-		GFF3196	0.88	+0.0
3,257,513	+		GFF3196	0.88	-0.3
3,257,521	-		GFF3196	0.90	+0.8
3,257,528	+				-0.6
3,257,541	-				-0.1
3,257,551	+				-1.0
3,257,551	+				+0.1
3,257,551	+				+0.0
3,257,551	+				+0.1
3,257,559	-				-1.5
3,257,559	-				+0.6
3,257,559	-				-0.9
3,257,563	-				+0.3
3,257,573	+				+1.3
3,257,578	+				-1.2
3,257,583	+				+1.8
3,257,584	+				-1.7
3,257,584	+				-1.3
3,257,584	+				-0.1
3,257,584	+				-0.2
3,257,592	-				-1.4
3,257,592	-				-0.5
3,257,592	-				+0.2
3,257,592	-				+1.1
3,257,594	-				+0.8
3,257,601	+				+0.5
3,257,601	+				+2.2
3,257,601	+				-1.1
3,257,606	+				+0.3
3,257,609	-				-0.3
3,257,609	-				+0.2
3,257,609	-				-1.4
3,257,609	-				+1.5
3,257,619	-				+0.3
3,257,623	+				-0.1
3,257,655	+				-0.5
3,257,656	+				+0.0
3,257,662	-				-0.7
3,257,716	-				+0.5
3,257,731	-		GFF3197	0.11	-0.2
3,257,733	+		GFF3197	0.12	+0.8
3,257,736	+		GFF3197	0.12	+0.6
3,257,786	+		GFF3197	0.20	-0.2
3,257,805	+		GFF3197	0.24	-0.6
3,257,852	-		GFF3197	0.31	-1.0
3,257,857	-		GFF3197	0.32	+0.6
3,257,859	+		GFF3197	0.33	-0.1
3,257,859	+		GFF3197	0.33	-0.5
3,257,859	+		GFF3197	0.33	-1.0
3,257,859	+		GFF3197	0.33	+0.8
3,257,859	+		GFF3197	0.33	-2.8
3,257,864	-		GFF3197	0.33	+0.3
3,257,867	-		GFF3197	0.34	-2.6
3,257,867	-		GFF3197	0.34	-0.5
3,257,894	+		GFF3197	0.38	+0.8
3,257,894	+		GFF3197	0.38	+1.1