Strain Fitness in Sphingobium sp. HT1-2 around GFF3119

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,190,997	+		GFF3118	0.63	+0.4
3,191,022	+		GFF3118	0.64	-1.1
3,191,038	+		GFF3118	0.65	-1.0
3,191,058	-		GFF3118	0.66	-0.5
3,191,059	-		GFF3118	0.66	+0.4
3,191,059	-		GFF3118	0.66	+0.3
3,191,059	-		GFF3118	0.66	+0.5
3,191,071	+		GFF3118	0.66	-0.9
3,191,071	+		GFF3118	0.66	+0.5
3,191,071	+		GFF3118	0.66	+1.0
3,191,074	-		GFF3118	0.66	-0.4
3,191,090	+		GFF3118	0.67	+0.8
3,191,093	-		GFF3118	0.67	-0.2
3,191,098	-		GFF3118	0.67	+1.4
3,191,109	+		GFF3118	0.68	-1.3
3,191,151	+		GFF3118	0.70	+0.2
3,191,151	+		GFF3118	0.70	+0.1
3,191,151	+		GFF3118	0.70	-0.8
3,191,151	+		GFF3118	0.70	-0.7
3,191,151	+		GFF3118	0.70	-0.1
3,191,151	+		GFF3118	0.70	+0.6
3,191,152	-		GFF3118	0.70	-1.3
3,191,156	+		GFF3118	0.70	+1.1
3,191,156	+		GFF3118	0.70	+1.6
3,191,159	-		GFF3118	0.70	+0.9
3,191,159	-		GFF3118	0.70	-0.1
3,191,159	-		GFF3118	0.70	-0.4
3,191,159	-		GFF3118	0.70	+0.9
3,191,164	-		GFF3118	0.70	+0.2
3,191,166	-		GFF3118	0.70	-0.3
3,191,205	-		GFF3118	0.72	+0.9
3,191,234	-		GFF3118	0.73	+0.4
3,191,237	+		GFF3118	0.73	-1.3
3,191,242	+		GFF3118	0.74	-0.8
3,191,247	+		GFF3118	0.74	-0.1
3,191,247	+		GFF3118	0.74	-0.6
3,191,247	+		GFF3118	0.74	+0.5
3,191,247	+		GFF3118	0.74	+0.1
3,191,250	-		GFF3118	0.74	-1.1
3,191,255	-		GFF3118	0.74	+0.0
3,191,255	-		GFF3118	0.74	-0.2
3,191,255	-		GFF3118	0.74	-0.6
3,191,255	-		GFF3118	0.74	+1.2
3,191,255	-		GFF3118	0.74	-0.6
3,191,255	-		GFF3118	0.74	+1.6
3,191,272	+		GFF3118	0.75	+0.0
3,191,282	+		GFF3118	0.75	+0.6
3,191,290	-		GFF3118	0.76	+1.0
3,191,307	+		GFF3118	0.76	-1.0
3,191,312	+		GFF3118	0.76	+1.0
3,191,312	+		GFF3118	0.76	+0.3
3,191,318	+		GFF3118	0.77	+0.2
3,191,320	+		GFF3118	0.77	+1.3
3,191,320	+		GFF3118	0.77	-0.1
3,191,320	-		GFF3118	0.77	-0.5
3,191,320	-		GFF3118	0.77	+0.4
3,191,320	-		GFF3118	0.77	-2.6
3,191,325	+		GFF3118	0.77	+0.2
3,191,325	+		GFF3118	0.77	-1.5
3,191,326	+		GFF3118	0.77	-0.1
3,191,326	+		GFF3118	0.77	-0.3
3,191,326	+		GFF3118	0.77	-0.6
3,191,326	+		GFF3118	0.77	-0.2
3,191,327	-		GFF3118	0.77	+1.3
3,191,333	-		GFF3118	0.77	+0.5
3,191,333	-		GFF3118	0.77	+1.0
3,191,333	-		GFF3118	0.77	+0.5
3,191,334	-		GFF3118	0.77	-1.2
3,191,334	-		GFF3118	0.77	+0.4
3,191,343	+		GFF3118	0.78	+2.1
3,191,343	+		GFF3118	0.78	-1.9
3,191,351	-		GFF3118	0.78	+0.9
3,191,351	-		GFF3118	0.78	+1.9
3,191,351	-		GFF3118	0.78	+0.7
3,191,353	-		GFF3118	0.78	-0.1
3,191,370	+		GFF3118	0.79	-1.2
3,191,371	+		GFF3118	0.79	-0.3
3,191,378	-		GFF3118	0.79	+0.7
3,191,379	-		GFF3118	0.79	+0.9
3,191,379	-		GFF3118	0.79	+0.5
3,191,384	-		GFF3118	0.79	+0.5
3,191,396	+		GFF3118	0.80	+2.2
3,191,404	-		GFF3118	0.80	+0.0
3,191,429	+		GFF3118	0.81	-1.5
3,191,430	+		GFF3118	0.81	-1.6
3,191,437	-		GFF3118	0.82	+0.7
3,191,446	+		GFF3118	0.82	-0.4
3,191,446	+		GFF3118	0.82	-0.2
3,191,446	+		GFF3118	0.82	+1.6
3,191,446	+		GFF3118	0.82	-1.0
3,191,446	+		GFF3118	0.82	-0.6
3,191,451	+		GFF3118	0.82	+0.5
3,191,454	-		GFF3118	0.82	-0.3
3,191,454	-		GFF3118	0.82	-0.6
3,191,454	-		GFF3118	0.82	-2.5
3,191,456	+		GFF3118	0.82	-0.9
3,191,456	+		GFF3118	0.82	+0.4
3,191,456	+		GFF3118	0.82	-0.3
3,191,456	+		GFF3118	0.82	+0.5
3,191,456	+		GFF3118	0.82	+0.4
3,191,464	-		GFF3118	0.83	+0.2
3,191,464	-		GFF3118	0.83	-0.3
3,191,464	-		GFF3118	0.83	-1.1
3,191,464	-		GFF3118	0.83	+1.8
3,191,470	-		GFF3118	0.83	-0.7
3,191,470	-		GFF3118	0.83	+0.8
3,191,498	+		GFF3118	0.84	-0.2
3,191,514	-		GFF3118	0.85	+1.4
3,191,516	-		GFF3118	0.85	+0.7
3,191,524	-		GFF3118	0.85	-0.7
3,191,528	+		GFF3118	0.85	-0.8
3,191,531	-		GFF3118	0.86	+1.4
3,191,534	+		GFF3118	0.86	+0.3
3,191,534	+		GFF3118	0.86	+1.2
3,191,535	-		GFF3118	0.86	+0.3
3,191,542	-		GFF3118	0.86	+0.5
3,191,542	-		GFF3118	0.86	+0.5
3,191,542	-		GFF3118	0.86	-0.2
3,191,564	-		GFF3118	0.87	+1.0
3,191,570	+		GFF3118	0.87	+0.7
3,191,571	+		GFF3118	0.87	+0.4
3,191,571	+		GFF3118	0.87	+0.6
3,191,575	+		GFF3118	0.87	-0.2
3,191,578	-		GFF3118	0.88	-0.0
3,191,578	-		GFF3118	0.88	+0.7
3,191,579	-		GFF3118	0.88	+0.6
3,191,580	+		GFF3118	0.88	-2.1
3,191,580	+		GFF3118	0.88	+0.3
3,191,588	-		GFF3118	0.88	+0.8
3,191,588	-		GFF3118	0.88	+1.4
3,191,606	-		GFF3118	0.89	+0.1
3,191,606	-		GFF3118	0.89	-0.4
3,191,607	+		GFF3118	0.89	+0.7
3,191,608	+		GFF3118	0.89	+0.0
3,191,608	+		GFF3118	0.89	+0.6
3,191,608	+		GFF3118	0.89	+0.6
3,191,608	+		GFF3118	0.89	+0.7
3,191,612	-		GFF3118	0.89	+0.2
3,191,616	+		GFF3118	0.89	+0.6
3,191,616	-		GFF3118	0.89	-0.6
3,191,616	-		GFF3118	0.89	+1.7
3,191,616	-		GFF3118	0.89	+1.3
3,191,616	-		GFF3118	0.89	-0.6
3,191,626	+		GFF3118	0.90	-0.5
3,191,635	+				-0.5
3,191,650	+				+0.7
3,191,650	+				+0.2
3,191,650	+				+0.7
3,191,658	-				+0.3
3,191,661	+				-0.4
3,191,677	-				+1.0
3,191,679	-				+0.7
3,191,680	+				+0.4
3,191,699	+				+0.8
3,191,705	+				-0.3
3,191,713	+				+0.1
3,191,713	+				+0.6
3,191,713	+				-0.1
3,191,721	-				-0.8
3,191,722	+				+0.8
3,191,730	-				+0.5
3,191,732	+				+1.5
3,191,732	+				-1.7
3,191,732	+				+0.4
3,191,732	+				+0.5
3,191,740	-				-0.9
3,191,740	-				+0.4
3,191,740	-				+0.8
3,191,754	-				+1.2
3,191,754	-				+0.2
3,191,775	-				-0.9
3,191,799	+				+1.0
3,191,815	-				+1.1
3,191,867	+				+0.8
3,191,875	-				+0.1
3,191,899	-				-1.3
3,191,899	-				-0.4
3,191,907	+				-1.5
3,191,925	+				-2.1
3,191,939	+				-0.6
3,191,939	+				-0.1
3,191,946	+				+1.1
3,191,946	+				+0.7
3,191,946	+				-1.4
3,191,946	+				+0.5
3,191,954	+				-1.1
3,191,954	-				+0.2
3,191,954	-				+0.1
3,191,954	-				-0.2
3,191,954	-				+0.2
3,191,954	-				-1.5
3,191,972	+				-0.2
3,191,993	-				+0.8
3,192,033	-		GFF3119	0.21	+0.2
3,192,034	+		GFF3119	0.21	-1.0
3,192,038	+		GFF3119	0.22	-0.4
3,192,038	+		GFF3119	0.22	-0.5
3,192,048	-		GFF3119	0.25	+1.9
3,192,048	-		GFF3119	0.25	-0.6
3,192,077	+		GFF3119	0.33	+0.3
3,192,109	+		GFF3119	0.42	-0.2
3,192,109	+		GFF3119	0.42	-0.1
3,192,109	+		GFF3119	0.42	-0.5
3,192,112	-		GFF3119	0.43	-0.6
3,192,112	-		GFF3119	0.43	+0.0
3,192,117	+		GFF3119	0.45	+0.3
3,192,124	+		GFF3119	0.46	+0.2
3,192,125	-		GFF3119	0.47	-0.3
3,192,127	-		GFF3119	0.47	-0.1
3,192,132	-		GFF3119	0.49	+0.2
3,192,164	-		GFF3119	0.58	+0.5
3,192,186	+		GFF3119	0.64	+1.1
3,192,194	-		GFF3119	0.66	+0.4
3,192,194	-		GFF3119	0.66	+0.4
3,192,230	+		GFF3119	0.76	+0.2
3,192,230	+		GFF3119	0.76	+1.6
3,192,230	+		GFF3119	0.76	-1.2
3,192,230	+		GFF3119	0.76	-1.0
3,192,230	+		GFF3119	0.76	-1.4
3,192,238	-		GFF3119	0.78	+0.9
3,192,238	-		GFF3119	0.78	-0.3
3,192,238	-		GFF3119	0.78	+0.6
3,192,238	-		GFF3119	0.78	-1.4
3,192,238	-		GFF3119	0.78	-0.2
3,192,254	+		GFF3119	0.83	+0.3
3,192,254	+		GFF3119	0.83	+0.0
3,192,262	-		GFF3119	0.85	-0.9
3,192,262	-		GFF3119	0.85	-1.7
3,192,262	-		GFF3119	0.85	-0.2
3,192,262	-		GFF3119	0.85	-0.9
3,192,262	-		GFF3119	0.85	-0.1
3,192,262	-		GFF3119	0.85	-0.1
3,192,262	-		GFF3119	0.85	-1.0
3,192,262	-		GFF3119	0.85	+0.3
3,192,268	-		GFF3119	0.87	+1.2
3,192,269	-		GFF3119	0.87	-1.4
3,192,299	+				+0.8
3,192,301	-				-0.3
3,192,317	+				+0.9
3,192,351	-				-0.1
3,192,392	+				-1.1
3,192,405	+				-2.6
3,192,421	+				-0.1
3,192,431	+				-1.3
3,192,431	+				+1.0
3,192,433	+				-0.5
3,192,436	+				+0.5
3,192,438	+				+0.0
3,192,439	-				+0.1
3,192,439	-				+0.9
3,192,445	+				-1.9
3,192,480	+				-0.3
3,192,539	-		GFF3120	0.10	-1.3
3,192,587	-		GFF3120	0.15	-1.6
3,192,630	+		GFF3120	0.19	+0.3
3,192,668	+		GFF3120	0.23	+0.2
3,192,681	-		GFF3120	0.24	-1.3
3,192,773	-		GFF3120	0.32	-0.0
3,192,824	-		GFF3120	0.37	-1.3
3,193,014	+		GFF3120	0.55	-0.7
3,193,020	+		GFF3120	0.55	+0.2
3,193,152	+		GFF3120	0.68	+0.3
3,193,206	+		GFF3120	0.73	-1.8
3,193,230	-		GFF3120	0.75	+0.5