Strain Fitness in Sphingobium sp. HT1-2 around GFF3109

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,179,199	-		GFF3107	0.65	-0.5
3,179,199	-		GFF3107	0.65	-0.2
3,179,199	-		GFF3107	0.65	-1.3
3,179,199	-		GFF3107	0.65	-0.9
3,179,199	-		GFF3107	0.65	-0.6
3,179,199	-		GFF3107	0.65	+0.2
3,179,199	-		GFF3107	0.65	-1.1
3,179,199	-		GFF3107	0.65	+1.0
3,179,199	-		GFF3107	0.65	-0.3
3,179,199	-		GFF3107	0.65	+0.3
3,179,199	-		GFF3107	0.65	-0.6
3,179,199	-		GFF3107	0.65	-1.5
3,179,199	-		GFF3107	0.65	-0.1
3,179,199	-		GFF3107	0.65	-0.1
3,179,210	-		GFF3107	0.67	+1.1
3,179,221	+		GFF3107	0.69	+1.5
3,179,233	+		GFF3107	0.71	+0.1
3,179,238	+		GFF3107	0.71	+0.6
3,179,245	-		GFF3107	0.73	+0.5
3,179,254	+		GFF3107	0.74	-0.4
3,179,269	+		GFF3107	0.77	-2.0
3,179,326	-		GFF3107	0.86	+0.3
3,179,326	-		GFF3107	0.86	+0.5
3,179,326	-		GFF3107	0.86	+1.4
3,179,329	+		GFF3107	0.87	+0.5
3,179,337	+		GFF3107	0.88	-1.1
3,179,354	-				+1.1
3,179,363	+				+0.1
3,179,420	-				-1.8
3,179,433	-				+0.4
3,179,433	-				-0.3
3,179,433	-				-0.4
3,179,453	+				-2.0
3,179,467	-				+1.8
3,179,467	-				-0.4
3,179,474	+				+1.9
3,179,477	-				+0.7
3,179,485	-		GFF3108	0.10	+0.9
3,179,504	+		GFF3108	0.13	-0.6
3,179,504	+		GFF3108	0.13	-0.1
3,179,504	+		GFF3108	0.13	+0.7
3,179,504	+		GFF3108	0.13	+1.2
3,179,504	+		GFF3108	0.13	-0.5
3,179,504	+		GFF3108	0.13	+0.1
3,179,504	+		GFF3108	0.13	-0.5
3,179,507	+		GFF3108	0.14	-1.3
3,179,512	-		GFF3108	0.15	-0.2
3,179,512	-		GFF3108	0.15	-1.8
3,179,512	-		GFF3108	0.15	-0.7
3,179,512	-		GFF3108	0.15	-1.4
3,179,512	-		GFF3108	0.15	-0.8
3,179,512	-		GFF3108	0.15	-0.5
3,179,512	-		GFF3108	0.15	+1.1
3,179,512	-		GFF3108	0.15	+0.6
3,179,512	-		GFF3108	0.15	+0.9
3,179,545	-		GFF3108	0.20	-0.6
3,179,545	-		GFF3108	0.20	+1.2
3,179,587	-		GFF3108	0.27	-1.6
3,179,588	+		GFF3108	0.27	+0.3
3,179,591	-		GFF3108	0.28	-2.5
3,179,651	-		GFF3108	0.37	-0.6
3,179,656	-		GFF3108	0.38	-0.4
3,179,657	+		GFF3108	0.38	-0.8
3,179,657	+		GFF3108	0.38	-0.3
3,179,657	+		GFF3108	0.38	-1.5
3,179,657	+		GFF3108	0.38	-2.0
3,179,657	+		GFF3108	0.38	+0.7
3,179,660	-		GFF3108	0.39	-1.6
3,179,663	+		GFF3108	0.39	+0.0
3,179,665	-		GFF3108	0.40	-0.3
3,179,665	-		GFF3108	0.40	+0.1
3,179,665	-		GFF3108	0.40	+1.0
3,179,665	-		GFF3108	0.40	-0.9
3,179,665	-		GFF3108	0.40	-0.3
3,179,676	+		GFF3108	0.42	+0.6
3,179,679	-		GFF3108	0.42	-0.3
3,179,681	+		GFF3108	0.42	-1.1
3,179,681	+		GFF3108	0.42	+0.5
3,179,684	-		GFF3108	0.43	-2.5
3,179,694	-		GFF3108	0.44	+1.0
3,179,702	+		GFF3108	0.46	-0.1
3,179,713	-		GFF3108	0.48	-0.4
3,179,738	-		GFF3108	0.52	-0.3
3,179,738	-		GFF3108	0.52	-0.2
3,179,771	+		GFF3108	0.57	-0.5
3,179,790	-		GFF3108	0.60	-0.5
3,179,808	-		GFF3108	0.63	-1.3
3,179,833	+		GFF3108	0.67	-0.8
3,179,833	+		GFF3108	0.67	-1.4
3,179,833	+		GFF3108	0.67	+0.7
3,179,833	+		GFF3108	0.67	-0.6
3,179,841	-		GFF3108	0.68	-0.6
3,179,848	+		GFF3108	0.70	-1.3
3,179,871	-		GFF3108	0.73	+1.1
3,179,871	-		GFF3108	0.73	+0.1
3,179,871	-		GFF3108	0.73	-0.4
3,179,894	-		GFF3108	0.77	+1.8
3,179,894	-		GFF3108	0.77	-0.5
3,179,934	+		GFF3108	0.84	-2.0
3,179,937	-		GFF3108	0.84	-0.4
3,179,937	-		GFF3108	0.84	+0.3
3,179,939	+		GFF3108	0.84	-0.4
3,179,939	+		GFF3108	0.84	+0.5
3,179,939	+		GFF3108	0.84	-0.3
3,179,939	+		GFF3108	0.84	-0.5
3,179,939	+		GFF3108	0.84	+0.0
3,179,939	+		GFF3108	0.84	+0.3
3,179,939	+		GFF3108	0.84	+1.0
3,179,939	+		GFF3108	0.84	-0.3
3,179,939	+		GFF3108	0.84	-0.3
3,179,944	+		GFF3108	0.85	+0.0
3,179,947	-		GFF3108	0.86	-0.6
3,179,947	-		GFF3108	0.86	+0.0
3,179,952	+		GFF3108	0.87	-0.5
3,179,962	+		GFF3108	0.88	+0.9
3,180,011	+				-0.9
3,180,026	-				+0.3
3,180,035	+				-0.6
3,180,064	+				+0.1
3,180,070	+				+0.4
3,180,071	-				-1.2
3,180,072	-				-0.1
3,180,092	+				-0.8
3,180,095	-				-0.4
3,180,110	+				+0.6
3,180,112	-				+0.3
3,180,120	+				-2.4
3,180,128	-				-1.8
3,180,135	-				-0.3
3,180,138	+				+0.3
3,180,145	-				+0.0
3,180,146	+				-1.4
3,180,146	+				-0.8
3,180,154	-				+0.3
3,180,170	+				+0.3
3,180,175	+				+0.8
3,180,183	+				-0.6
3,180,185	+				-0.5
3,180,185	+				+0.6
3,180,188	-				-0.2
3,180,207	+				-1.3
3,180,207	+				+0.4
3,180,227	+				+0.2
3,180,227	+				-0.0
3,180,235	-				+0.1
3,180,264	+				+0.3
3,180,267	-				+0.3
3,180,272	-				+0.5
3,180,278	+				+1.8
3,180,278	+				-2.7
3,180,281	-				+0.2
3,180,288	+				-0.9
3,180,296	-				+0.0
3,180,301	+				-1.1
3,180,301	-				-0.1
3,180,306	+				-0.1
3,180,356	+				-0.1
3,180,394	+		GFF3109	0.12	+0.6
3,180,402	+		GFF3109	0.13	+1.2
3,180,411	-		GFF3109	0.13	+0.0
3,180,419	+		GFF3109	0.14	-2.0
3,180,419	+		GFF3109	0.14	-0.7
3,180,421	+		GFF3109	0.14	-0.7
3,180,440	-		GFF3109	0.15	+0.7
3,180,482	+		GFF3109	0.18	-1.0
3,180,490	+		GFF3109	0.18	-1.8
3,180,552	+		GFF3109	0.22	-0.5
3,180,552	+		GFF3109	0.22	-0.6
3,180,552	+		GFF3109	0.22	-0.3
3,180,552	+		GFF3109	0.22	-0.0
3,180,565	+		GFF3109	0.23	-0.1
3,180,570	+		GFF3109	0.23	+1.2
3,180,570	+		GFF3109	0.23	-1.8
3,180,573	-		GFF3109	0.23	+2.6
3,180,578	-		GFF3109	0.24	-0.0
3,180,585	+		GFF3109	0.24	+0.9
3,180,601	+		GFF3109	0.25	-0.6
3,180,603	-		GFF3109	0.25	+0.0
3,180,611	+		GFF3109	0.26	-0.0
3,180,660	+		GFF3109	0.29	+0.7
3,180,670	+		GFF3109	0.29	+1.2
3,180,670	-		GFF3109	0.29	+0.3
3,180,670	-		GFF3109	0.29	-2.6
3,180,680	+		GFF3109	0.30	-1.9
3,180,737	+		GFF3109	0.33	+0.3
3,180,751	-		GFF3109	0.34	-0.9
3,180,758	+		GFF3109	0.35	-0.1
3,180,766	-		GFF3109	0.35	-1.4
3,180,794	-		GFF3109	0.37	-0.6
3,180,794	-		GFF3109	0.37	-1.8
3,180,807	-		GFF3109	0.38	+0.6
3,180,830	+		GFF3109	0.39	-1.3
3,180,830	+		GFF3109	0.39	+0.5
3,180,830	+		GFF3109	0.39	+0.6
3,180,838	-		GFF3109	0.40	-1.3
3,180,838	-		GFF3109	0.40	-1.4
3,180,838	-		GFF3109	0.40	+0.1
3,180,838	-		GFF3109	0.40	-0.2
3,180,838	-		GFF3109	0.40	+1.0
3,180,838	-		GFF3109	0.40	+0.8
3,180,859	+		GFF3109	0.41	-2.9
3,180,875	+		GFF3109	0.42	-2.0
3,180,878	-		GFF3109	0.42	-1.8
3,180,880	+		GFF3109	0.42	-1.7
3,180,885	+		GFF3109	0.43	+0.5
3,180,901	-		GFF3109	0.44	-0.7
3,180,910	+		GFF3109	0.44	-1.3
3,180,924	+		GFF3109	0.45	+0.9
3,180,924	+		GFF3109	0.45	-0.6
3,180,927	-		GFF3109	0.45	+0.1
3,180,927	-		GFF3109	0.45	-0.7
3,180,932	-		GFF3109	0.45	-1.5
3,180,934	+		GFF3109	0.46	-0.6
3,180,934	+		GFF3109	0.46	-0.4
3,180,934	+		GFF3109	0.46	-1.9
3,180,934	+		GFF3109	0.46	+0.4
3,180,934	+		GFF3109	0.46	-0.3
3,180,934	+		GFF3109	0.46	+0.5
3,180,942	-		GFF3109	0.46	-0.1
3,180,942	-		GFF3109	0.46	-0.3
3,180,942	-		GFF3109	0.46	+0.5
3,180,942	-		GFF3109	0.46	-0.5
3,180,988	+		GFF3109	0.49	-1.5
3,181,005	-		GFF3109	0.50	+0.2
3,181,011	-		GFF3109	0.50	+0.0
3,181,045	-		GFF3109	0.53	+0.1
3,181,045	-		GFF3109	0.53	-0.1
3,181,045	-		GFF3109	0.53	-0.8
3,181,078	-		GFF3109	0.55	-0.3
3,181,093	+		GFF3109	0.55	-1.0
3,181,103	+		GFF3109	0.56	+0.7
3,181,106	-		GFF3109	0.56	+0.1
3,181,108	-		GFF3109	0.56	-2.6
3,181,140	-		GFF3109	0.58	-0.3
3,181,143	+		GFF3109	0.59	-1.4
3,181,148	+		GFF3109	0.59	+0.5
3,181,148	+		GFF3109	0.59	+1.4
3,181,148	+		GFF3109	0.59	-1.2
3,181,148	+		GFF3109	0.59	+0.1
3,181,148	+		GFF3109	0.59	+0.7
3,181,153	+		GFF3109	0.59	-0.2
3,181,156	-		GFF3109	0.59	+1.3
3,181,156	-		GFF3109	0.59	+0.5
3,181,158	+		GFF3109	0.60	-1.9
3,181,161	-		GFF3109	0.60	-1.6
3,181,164	+		GFF3109	0.60	+0.4
3,181,164	+		GFF3109	0.60	+0.1
3,181,164	+		GFF3109	0.60	+0.8
3,181,165	+		GFF3109	0.60	-1.7
3,181,172	-		GFF3109	0.60	-0.6
3,181,174	+		GFF3109	0.61	-0.4
3,181,177	-		GFF3109	0.61	+0.2
3,181,179	+		GFF3109	0.61	-0.6
3,181,182	-		GFF3109	0.61	-0.1
3,181,182	-		GFF3109	0.61	-2.0
3,181,182	-		GFF3109	0.61	-0.7
3,181,182	-		GFF3109	0.61	-1.3
3,181,182	-		GFF3109	0.61	+0.9
3,181,182	-		GFF3109	0.61	-0.4
3,181,182	-		GFF3109	0.61	+1.3
3,181,182	-		GFF3109	0.61	-1.3
3,181,182	-		GFF3109	0.61	-1.0
3,181,182	-		GFF3109	0.61	-0.1
3,181,182	-		GFF3109	0.61	-0.5
3,181,182	-		GFF3109	0.61	-2.3
3,181,187	-		GFF3109	0.61	-0.9
3,181,225	-		GFF3109	0.64	+1.4
3,181,244	+		GFF3109	0.65	-0.7
3,181,244	+		GFF3109	0.65	+1.0
3,181,244	+		GFF3109	0.65	+0.8
3,181,244	+		GFF3109	0.65	+0.2
3,181,257	-		GFF3109	0.66	+0.9
3,181,291	+		GFF3109	0.68	-1.3
3,181,298	+		GFF3109	0.68	+1.2
3,181,299	-		GFF3109	0.68	-0.5
3,181,299	-		GFF3109	0.68	+1.8
3,181,306	+		GFF3109	0.69	-0.8
3,181,329	-		GFF3109	0.70	+0.6
3,181,350	+		GFF3109	0.71	-0.6
3,181,360	-		GFF3109	0.72	+0.8
3,181,360	-		GFF3109	0.72	-0.8
3,181,360	-		GFF3109	0.72	+2.1
3,181,373	+		GFF3109	0.73	-0.3
3,181,384	+		GFF3109	0.74	+1.3
3,181,384	+		GFF3109	0.74	-1.5
3,181,392	-		GFF3109	0.74	-0.7
3,181,397	+		GFF3109	0.74	+0.3
3,181,455	+		GFF3109	0.78	-1.1
3,181,511	+		GFF3109	0.81	-1.9
3,181,518	-		GFF3109	0.82	-0.6
3,181,520	+		GFF3109	0.82	-2.1
3,181,547	+		GFF3109	0.84	+0.5
3,181,555	-		GFF3109	0.84	-0.3
3,181,560	+		GFF3109	0.84	-1.5
3,181,560	+		GFF3109	0.84	-0.3
3,181,565	+		GFF3109	0.85	-0.8
3,181,573	-		GFF3109	0.85	-1.7
3,181,592	-		GFF3109	0.86	+1.3
3,181,598	+		GFF3109	0.87	-1.3
3,181,617	+		GFF3109	0.88	+0.8
3,181,630	+		GFF3109	0.89	-1.3
3,181,630	+		GFF3109	0.89	+0.9
3,181,638	-		GFF3109	0.89	-1.3
3,181,654	+				+1.6
3,181,654	+				-0.4
3,181,657	-				-2.6
3,181,661	+				+0.4
3,181,661	+				+0.7
3,181,661	+				+0.4
3,181,664	-				-1.2
3,181,669	-				-1.7
3,181,669	-				+0.9
3,181,669	-				+0.2
3,181,698	+				-1.4
3,181,734	+				+0.3
3,181,734	+				+0.6
3,181,742	+				-2.1
3,181,742	-				-0.1
3,181,750	-				-0.8
3,181,750	-				-1.1
3,181,753	+				+0.5
3,181,761	-				-1.0
3,181,761	-				+0.1
3,181,788	-				-2.1
3,181,788	-				+0.1
3,181,862	+				-0.4
3,181,869	-				+1.1
3,181,889	-				-0.3
3,181,895	+		GFF3110	0.10	+0.9
3,181,903	-		GFF3110	0.11	-1.5
3,181,903	-		GFF3110	0.11	+0.0
3,181,912	+		GFF3110	0.12	-0.5
3,181,918	-		GFF3110	0.13	-2.3
3,181,920	-		GFF3110	0.13	-0.6
3,181,922	+		GFF3110	0.14	+0.6
3,181,927	+		GFF3110	0.14	+1.0
3,181,929	+		GFF3110	0.14	-0.6
3,181,929	+		GFF3110	0.14	+1.3
3,181,930	-		GFF3110	0.14	-1.0
3,181,935	+		GFF3110	0.15	+0.8
3,181,937	-		GFF3110	0.15	+0.5
3,181,937	-		GFF3110	0.15	+0.5
3,181,937	-		GFF3110	0.15	-0.3
3,181,937	-		GFF3110	0.15	+0.1
3,181,937	-		GFF3110	0.15	+0.3
3,181,939	+		GFF3110	0.16	+0.6
3,181,939	+		GFF3110	0.16	-1.0
3,181,943	-		GFF3110	0.16	+0.5
3,181,943	-		GFF3110	0.16	-1.5
3,181,947	-		GFF3110	0.17	-0.6
3,181,947	-		GFF3110	0.17	+0.2
3,181,947	-		GFF3110	0.17	-1.8
3,181,947	-		GFF3110	0.17	+0.1
3,181,953	+		GFF3110	0.17	-0.2
3,181,965	+		GFF3110	0.19	-1.0
3,181,982	-		GFF3110	0.21	+0.3
3,182,023	+		GFF3110	0.26	-0.5
3,182,038	+		GFF3110	0.28	+0.2
3,182,046	-		GFF3110	0.29	-0.2
3,182,046	-		GFF3110	0.29	-1.6
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