Strain Fitness in Sphingobium sp. HT1-2 around GFF3070

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,140,083	+		GFF3068	0.43	-0.1
3,140,102	-		GFF3068	0.49	+1.0
3,140,122	+		GFF3068	0.55	-2.6
3,140,136	-		GFF3068	0.60	+2.1
3,140,176	+		GFF3068	0.72	-0.3
3,140,178	+		GFF3068	0.73	+0.2
3,140,189	+		GFF3068	0.76	-1.3
3,140,189	+		GFF3068	0.76	+0.3
3,140,197	+		GFF3068	0.79	-0.9
3,140,197	+		GFF3068	0.79	+1.5
3,140,197	+		GFF3068	0.79	-1.7
3,140,205	-		GFF3068	0.81	+0.3
3,140,205	-		GFF3068	0.81	+0.5
3,140,225	+		GFF3068	0.88	-1.0
3,140,233	-				-1.1
3,140,247	+				+0.3
3,140,287	-				+0.5
3,140,287	-				+0.4
3,140,353	+				+0.2
3,140,381	+				-0.5
3,140,389	-		GFF3069	0.11	-0.1
3,140,389	-		GFF3069	0.11	-0.5
3,140,389	-		GFF3069	0.11	-0.2
3,140,390	+		GFF3069	0.11	-1.3
3,140,434	-		GFF3069	0.17	+0.6
3,140,474	+		GFF3069	0.23	-1.1
3,140,475	+		GFF3069	0.23	-0.7
3,140,483	-		GFF3069	0.24	+1.0
3,140,483	-		GFF3069	0.24	+0.9
3,140,499	+		GFF3069	0.27	-0.0
3,140,499	+		GFF3069	0.27	-1.1
3,140,499	+		GFF3069	0.27	-0.3
3,140,499	+		GFF3069	0.27	-0.7
3,140,499	+		GFF3069	0.27	-0.3
3,140,499	+		GFF3069	0.27	-1.3
3,140,499	+		GFF3069	0.27	+1.5
3,140,507	-		GFF3069	0.28	+0.6
3,140,507	-		GFF3069	0.28	-1.1
3,140,507	-		GFF3069	0.28	-0.2
3,140,507	-		GFF3069	0.28	-0.3
3,140,507	-		GFF3069	0.28	-0.3
3,140,507	-		GFF3069	0.28	-1.5
3,140,507	-		GFF3069	0.28	-1.1
3,140,507	-		GFF3069	0.28	-0.5
3,140,510	+		GFF3069	0.28	+1.7
3,140,516	+		GFF3069	0.29	-0.2
3,140,531	+		GFF3069	0.31	-0.6
3,140,531	+		GFF3069	0.31	-1.6
3,140,531	+		GFF3069	0.31	+0.0
3,140,531	+		GFF3069	0.31	-0.8
3,140,531	+		GFF3069	0.31	-1.7
3,140,531	+		GFF3069	0.31	+0.4
3,140,531	+		GFF3069	0.31	+0.1
3,140,531	+		GFF3069	0.31	-0.7
3,140,531	+		GFF3069	0.31	+0.2
3,140,531	+		GFF3069	0.31	+1.0
3,140,531	+		GFF3069	0.31	+0.3
3,140,531	+		GFF3069	0.31	+0.7
3,140,531	+		GFF3069	0.31	+0.5
3,140,531	+		GFF3069	0.31	+0.2
3,140,539	-		GFF3069	0.32	-0.5
3,140,539	-		GFF3069	0.32	+0.4
3,140,539	-		GFF3069	0.32	+0.6
3,140,539	-		GFF3069	0.32	+0.3
3,140,539	-		GFF3069	0.32	+0.8
3,140,539	-		GFF3069	0.32	-1.9
3,140,539	-		GFF3069	0.32	+0.3
3,140,539	-		GFF3069	0.32	-0.5
3,140,539	-		GFF3069	0.32	+0.5
3,140,539	-		GFF3069	0.32	+0.5
3,140,565	+		GFF3069	0.36	+0.8
3,140,613	-		GFF3069	0.43	-0.1
3,140,617	+		GFF3069	0.44	-1.9
3,140,630	+		GFF3069	0.46	+0.5
3,140,630	+		GFF3069	0.46	-0.6
3,140,630	-		GFF3069	0.46	-0.1
3,140,630	-		GFF3069	0.46	-0.6
3,140,633	+		GFF3069	0.46	-0.2
3,140,638	-		GFF3069	0.47	-0.9
3,140,638	-		GFF3069	0.47	-0.6
3,140,641	-		GFF3069	0.47	-0.6
3,140,654	+		GFF3069	0.49	-1.4
3,140,654	+		GFF3069	0.49	+0.3
3,140,659	+		GFF3069	0.50	+0.4
3,140,662	-		GFF3069	0.50	+0.3
3,140,662	-		GFF3069	0.50	+0.1
3,140,662	-		GFF3069	0.50	-1.7
3,140,680	+		GFF3069	0.53	+0.1
3,140,680	+		GFF3069	0.53	-0.4
3,140,736	+		GFF3069	0.61	+1.5
3,140,742	+		GFF3069	0.62	+0.5
3,140,763	-		GFF3069	0.65	-0.8
3,140,787	+		GFF3069	0.69	-1.1
3,140,789	-		GFF3069	0.69	+0.8
3,140,799	+		GFF3069	0.70	+0.4
3,140,802	+		GFF3069	0.71	-0.2
3,140,809	+		GFF3069	0.72	+1.0
3,140,824	+		GFF3069	0.74	-0.2
3,140,846	+		GFF3069	0.77	+0.2
3,140,854	-		GFF3069	0.79	-0.9
3,140,861	+		GFF3069	0.80	+0.4
3,140,874	+		GFF3069	0.81	+0.6
3,140,874	+		GFF3069	0.81	-1.6
3,140,882	-		GFF3069	0.83	-0.3
3,140,898	-		GFF3069	0.85	-0.3
3,140,908	-		GFF3069	0.86	+0.1
3,140,908	-		GFF3069	0.86	-0.7
3,140,915	+		GFF3069	0.87	-0.9
3,140,931	+		GFF3069	0.90	+0.8
3,140,931	-		GFF3069	0.90	+0.8
3,140,937	+				+0.7
3,140,939	-				-0.0
3,140,940	-				+0.4
3,140,943	+				+0.0
3,140,945	-				+0.6
3,140,961	+				+0.6
3,140,962	+				+0.4
3,140,962	+				+0.4
3,140,966	+				-2.1
3,140,969	-				-0.6
3,140,974	-				-1.9
3,140,983	-				+0.8
3,140,989	+				-0.8
3,140,989	+				+0.4
3,140,989	+				-0.8
3,140,989	+				-0.2
3,140,989	+				-1.1
3,140,989	+				+0.2
3,140,996	-				-0.9
3,140,997	-				+0.8
3,140,997	-				-0.3
3,140,997	-				+0.3
3,141,009	+				-0.1
3,141,009	+				-1.0
3,141,024	-				-0.9
3,141,024	-				+0.0
3,141,027	+				+2.0
3,141,027	+				+0.4
3,141,051	+				+0.3
3,141,052	+				+0.6
3,141,082	+				+0.0
3,141,082	+				-0.0
3,141,100	+				-1.8
3,141,101	-				+0.2
3,141,116	+				-1.6
3,141,173	+		GFF3070	0.18	-0.6
3,141,173	+		GFF3070	0.18	+0.3
3,141,176	-		GFF3070	0.18	-0.7
3,141,178	+		GFF3070	0.18	-2.1
3,141,181	-		GFF3070	0.19	-1.1
3,141,183	+		GFF3070	0.19	-1.1
3,141,191	-		GFF3070	0.20	+1.0
3,141,195	+		GFF3070	0.21	+0.1
3,141,254	+		GFF3070	0.29	+1.1
3,141,255	+		GFF3070	0.29	+0.6
3,141,278	+		GFF3070	0.32	-1.8
3,141,286	-		GFF3070	0.33	+0.4
3,141,286	-		GFF3070	0.33	-0.4
3,141,286	-		GFF3070	0.33	+0.2
3,141,289	+		GFF3070	0.34	+0.5
3,141,289	+		GFF3070	0.34	-0.4
3,141,289	+		GFF3070	0.34	+0.6
3,141,289	+		GFF3070	0.34	+0.3
3,141,289	+		GFF3070	0.34	-1.5
3,141,289	+		GFF3070	0.34	-0.5
3,141,289	+		GFF3070	0.34	-0.1
3,141,289	+		GFF3070	0.34	+0.5
3,141,289	+		GFF3070	0.34	-0.9
3,141,289	+		GFF3070	0.34	-1.3
3,141,289	+		GFF3070	0.34	+0.3
3,141,297	-		GFF3070	0.35	-0.2
3,141,297	-		GFF3070	0.35	+0.9
3,141,297	-		GFF3070	0.35	+0.7
3,141,297	-		GFF3070	0.35	+0.4
3,141,297	-		GFF3070	0.35	-2.5
3,141,297	-		GFF3070	0.35	+0.4
3,141,297	-		GFF3070	0.35	+0.8
3,141,297	-		GFF3070	0.35	-0.5
3,141,297	-		GFF3070	0.35	-2.3
3,141,308	+		GFF3070	0.36	+0.6
3,141,316	-		GFF3070	0.37	+0.4
3,141,332	+		GFF3070	0.40	-0.4
3,141,335	-		GFF3070	0.40	+0.3
3,141,344	+		GFF3070	0.41	+0.5
3,141,376	+		GFF3070	0.46	+1.1
3,141,378	-		GFF3070	0.46	-1.5
3,141,378	-		GFF3070	0.46	-1.0
3,141,378	-		GFF3070	0.46	-0.3
3,141,380	+		GFF3070	0.46	-1.4
3,141,380	+		GFF3070	0.46	-1.1
3,141,383	-		GFF3070	0.47	-0.6
3,141,386	+		GFF3070	0.47	+0.6
3,141,388	-		GFF3070	0.47	-1.0
3,141,394	-		GFF3070	0.48	-1.1
3,141,394	-		GFF3070	0.48	+0.5
3,141,427	+		GFF3070	0.53	+0.1
3,141,435	-		GFF3070	0.54	+0.9
3,141,435	-		GFF3070	0.54	-1.6
3,141,450	+		GFF3070	0.56	+0.0
3,141,453	-		GFF3070	0.56	-0.1
3,141,455	+		GFF3070	0.56	-1.8
3,141,455	+		GFF3070	0.56	-1.1
3,141,458	-		GFF3070	0.57	+0.7
3,141,458	-		GFF3070	0.57	+0.7
3,141,458	-		GFF3070	0.57	-1.1
3,141,464	+		GFF3070	0.58	-0.1
3,141,468	+		GFF3070	0.58	-0.4
3,141,594	-		GFF3070	0.76	-1.1
3,141,604	-		GFF3070	0.77	+0.8
3,141,634	-		GFF3070	0.81	+1.0
3,141,640	+		GFF3070	0.82	+0.7
3,141,640	+		GFF3070	0.82	-1.5
3,141,640	+		GFF3070	0.82	+0.7
3,141,648	-		GFF3070	0.83	+0.1
3,141,648	-		GFF3070	0.83	-0.1
3,141,648	-		GFF3070	0.83	-0.7
3,141,648	-		GFF3070	0.83	+0.3
3,141,650	+		GFF3070	0.83	+0.0
3,141,650	+		GFF3070	0.83	-0.6
3,141,650	+		GFF3070	0.83	+0.2
3,141,650	+		GFF3070	0.83	-0.8
3,141,650	+		GFF3070	0.83	+0.3
3,141,650	+		GFF3070	0.83	-0.6
3,141,650	+		GFF3070	0.83	+0.3
3,141,650	+		GFF3070	0.83	+0.1
3,141,658	-		GFF3070	0.84	-0.5
3,141,658	-		GFF3070	0.84	-1.1
3,141,658	-		GFF3070	0.84	+0.1
3,141,658	-		GFF3070	0.84	+1.1
3,141,658	-		GFF3070	0.84	+0.9
3,141,658	-		GFF3070	0.84	+1.2
3,141,668	-		GFF3070	0.86	-1.1
3,141,673	-		GFF3070	0.87	-2.7
3,141,685	-		GFF3070	0.88	-0.0
3,141,685	-		GFF3070	0.88	-0.5
3,141,702	-				+1.1
3,141,712	-				-1.4
3,141,734	-				-2.2
3,141,771	+				-1.4
3,141,772	+				-1.0
3,141,772	+				-1.4
3,141,776	+				-2.0
3,141,779	-				+0.7
3,141,784	-				-0.6
3,141,811	+				+0.1
3,141,821	-				-0.0
3,141,852	+				+0.4
3,141,852	-				-0.2
3,141,864	+				-0.8
3,141,875	-				-0.0
3,141,880	-				-0.2
3,142,582	-				+1.3
3,142,582	-				+0.0
3,142,582	-				+0.9
3,142,582	-				-0.3
3,142,582	-				+0.6
3,142,584	+				+0.3
3,142,584	+				+1.2
3,142,592	-		GFF3072	0.12	-0.5
3,142,596	+		GFF3072	0.14	+0.3
3,142,615	+		GFF3072	0.21	-0.3
3,142,621	-		GFF3072	0.24	-0.2
3,142,621	-		GFF3072	0.24	-0.3
3,142,621	-		GFF3072	0.24	-2.1
3,142,621	-		GFF3072	0.24	-1.4
3,142,623	+		GFF3072	0.24	+0.5
3,142,634	+		GFF3072	0.29	+0.2
3,142,634	+		GFF3072	0.29	-0.9
3,142,634	+		GFF3072	0.29	-1.7
3,142,642	-		GFF3072	0.32	+0.4
3,142,652	+		GFF3072	0.36	+0.1
3,142,652	+		GFF3072	0.36	-0.9
3,142,652	+		GFF3072	0.36	+0.5
3,142,666	+		GFF3072	0.41	-0.3
3,142,675	-		GFF3072	0.45	+0.8
3,142,679	-		GFF3072	0.46	-1.5
3,142,732	-		GFF3072	0.67	-2.1
3,142,746	-		GFF3072	0.73	-2.0
3,142,751	-		GFF3072	0.75	-1.6