Strain Fitness in Sphingobium sp. HT1-2 around GFF3063

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,135,268	+				+0.3
3,135,268	+				-1.4
3,135,268	+				+0.8
3,135,274	-				+0.3
3,135,276	-				-1.1
3,135,279	+				+1.4
3,135,286	+				-1.5
3,135,287	-				+1.5
3,135,287	-				-0.9
3,135,339	+				-3.1
3,135,350	+				-2.7
3,135,358	-				-4.5
3,135,368	+				-2.4
3,135,375	+				-2.8
3,135,399	+		GFF3062	0.10	-2.5
3,135,407	-		GFF3062	0.11	-0.0
3,135,432	-		GFF3062	0.14	-1.3
3,135,435	+		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-2.2
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	+0.1
3,135,437	-		GFF3062	0.15	-0.5
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-3.4
3,135,437	-		GFF3062	0.15	-2.1
3,135,437	-		GFF3062	0.15	-2.8
3,135,443	-		GFF3062	0.16	-4.8
3,135,443	-		GFF3062	0.16	-3.2
3,135,446	-		GFF3062	0.16	-0.3
3,135,452	+		GFF3062	0.17	-2.1
3,135,485	+		GFF3062	0.21	-0.3
3,135,488	+		GFF3062	0.22	-1.9
3,135,488	+		GFF3062	0.22	-2.4
3,135,488	+		GFF3062	0.22	-2.3
3,135,488	+		GFF3062	0.22	-1.5
3,135,488	+		GFF3062	0.22	-2.4
3,135,488	+		GFF3062	0.22	-1.7
3,135,488	+		GFF3062	0.22	-2.3
3,135,488	+		GFF3062	0.22	-1.9
3,135,496	-		GFF3062	0.23	-3.9
3,135,496	-		GFF3062	0.23	-2.7
3,135,496	-		GFF3062	0.23	-2.3
3,135,496	-		GFF3062	0.23	-0.6
3,135,508	+		GFF3062	0.24	-1.1
3,135,522	-		GFF3062	0.26	-3.1
3,135,530	+		GFF3062	0.27	-2.6
3,135,532	+		GFF3062	0.27	-2.1
3,135,538	-		GFF3062	0.28	-1.8
3,135,538	-		GFF3062	0.28	-1.5
3,135,540	-		GFF3062	0.28	-1.6
3,135,542	+		GFF3062	0.29	-1.3
3,135,568	+		GFF3062	0.32	-2.7
3,135,578	+		GFF3062	0.33	-2.4
3,135,578	+		GFF3062	0.33	-2.0
3,135,578	+		GFF3062	0.33	-2.7
3,135,578	+		GFF3062	0.33	-1.9
3,135,578	+		GFF3062	0.33	-2.3
3,135,586	-		GFF3062	0.35	-1.9
3,135,586	-		GFF3062	0.35	-1.7
3,135,586	-		GFF3062	0.35	-1.9
3,135,586	-		GFF3062	0.35	-2.3
3,135,608	-		GFF3062	0.37	-1.4
3,135,620	+		GFF3062	0.39	-2.4
3,135,628	-		GFF3062	0.40	-1.5
3,135,633	-		GFF3062	0.41	-1.9
3,135,638	-		GFF3062	0.41	-2.0
3,135,693	+		GFF3062	0.48	-1.4
3,135,693	+		GFF3062	0.48	-1.4
3,135,693	+		GFF3062	0.48	-0.6
3,135,693	+		GFF3062	0.48	-2.2
3,135,693	-		GFF3062	0.48	-3.3
3,135,701	-		GFF3062	0.50	-2.2
3,135,701	-		GFF3062	0.50	-2.1
3,135,701	-		GFF3062	0.50	-2.1
3,135,720	+		GFF3062	0.52	-1.7
3,135,725	-		GFF3062	0.53	-1.5
3,135,732	-		GFF3062	0.54	-1.2
3,135,746	+		GFF3062	0.55	-2.9
3,135,746	+		GFF3062	0.55	-0.5
3,135,771	+		GFF3062	0.59	-3.4
3,135,794	-		GFF3062	0.62	-2.2
3,135,813	+		GFF3062	0.64	-1.9
3,135,831	-		GFF3062	0.67	-3.3
3,135,857	+		GFF3062	0.70	-2.7
3,135,857	+		GFF3062	0.70	-1.5
3,135,865	-		GFF3062	0.71	-1.9
3,135,865	-		GFF3062	0.71	-2.0
3,135,867	+		GFF3062	0.71	-2.4
3,135,868	+		GFF3062	0.71	-1.5
3,135,868	+		GFF3062	0.71	-1.6
3,135,869	+		GFF3062	0.72	-3.5
3,135,869	+		GFF3062	0.72	-3.0
3,135,869	+		GFF3062	0.72	-2.0
3,135,875	+		GFF3062	0.72	-1.0
3,135,875	+		GFF3062	0.72	-1.3
3,135,875	-		GFF3062	0.72	-1.2
3,135,875	-		GFF3062	0.72	-2.2
3,135,876	-		GFF3062	0.72	-1.4
3,135,877	-		GFF3062	0.73	-2.3
3,135,877	-		GFF3062	0.73	-2.1
3,135,877	-		GFF3062	0.73	-2.1
3,135,877	-		GFF3062	0.73	-2.9
3,135,888	-		GFF3062	0.74	-2.0
3,135,888	-		GFF3062	0.74	-3.1
3,135,915	-		GFF3062	0.78	-0.8
3,135,965	-		GFF3062	0.84	-1.1
3,135,970	+		GFF3062	0.85	-1.6
3,135,970	+		GFF3062	0.85	-1.4
3,135,976	+		GFF3062	0.85	-2.9
3,135,977	-		GFF3062	0.86	-2.1
3,135,978	-		GFF3062	0.86	-2.2
3,135,978	-		GFF3062	0.86	-0.6
3,135,978	-		GFF3062	0.86	-2.6
3,135,978	-		GFF3062	0.86	-2.5
3,135,978	-		GFF3062	0.86	-1.6
3,135,984	-		GFF3062	0.87	-2.0
3,135,984	-		GFF3062	0.87	-1.4
3,135,984	-		GFF3062	0.87	-2.0
3,135,984	-		GFF3062	0.87	-2.9
3,135,984	-		GFF3062	0.87	-1.4
3,135,991	+		GFF3062	0.87	-1.4
3,135,991	+		GFF3062	0.87	-2.8
3,135,991	+		GFF3062	0.87	-3.2
3,136,006	+		GFF3062	0.89	-2.3
3,136,018	+				-1.4
3,136,075	-				-1.9
3,136,154	+				-0.4
3,136,171	+				+0.5
3,136,210	-				-2.3
3,136,218	+				+0.6
3,136,253	+				+0.1
3,136,259	+				+0.0
3,136,259	+				+0.1
3,136,259	+				-0.0
3,136,267	-				+0.6
3,136,267	-				-0.2
3,136,267	-				-1.3
3,136,267	-				-0.7
3,136,267	-				+1.5
3,136,294	+		GFF3063	0.12	-0.8
3,136,302	-		GFF3063	0.15	+1.1
3,136,304	+		GFF3063	0.16	-0.9
3,136,312	-		GFF3063	0.19	-1.1
3,136,330	-		GFF3063	0.27	-0.5
3,136,342	+		GFF3063	0.31	+0.2
3,136,342	+		GFF3063	0.31	+0.0
3,136,360	-		GFF3063	0.39	-0.3
3,136,394	-		GFF3063	0.52	-1.2
3,136,408	-		GFF3063	0.58	+0.1
3,136,425	+		GFF3063	0.65	-0.5
3,136,425	+		GFF3063	0.65	+0.6
3,136,425	+		GFF3063	0.65	-1.7
3,136,425	+		GFF3063	0.65	-0.4
3,136,433	-		GFF3063	0.68	-0.0
3,136,438	-		GFF3063	0.70	-0.9
3,136,438	-		GFF3063	0.70	-0.3
3,136,438	-		GFF3063	0.70	+0.3
3,136,444	+		GFF3063	0.72	-1.5
3,136,452	-		GFF3063	0.76	+0.2
3,136,468	+		GFF3063	0.82	-1.1
3,136,468	+		GFF3063	0.82	-2.6
3,136,482	+		GFF3063	0.88	-1.4
3,136,548	-				-0.8
3,136,551	+				-0.6
3,136,551	+				+1.4
3,136,554	-				+0.3
3,136,559	-				-0.0
3,136,574	+				-2.3
3,136,574	+				-0.2
3,136,574	+				+0.4
3,136,574	+				-1.6
3,136,574	+				-0.6
3,136,574	+				-1.2
3,136,574	+				-0.8
3,136,574	+				+0.2
3,136,575	-				-2.2
3,136,575	-				-1.5
3,136,575	-				-0.3
3,136,582	-		GFF3064	0.11	-1.2
3,136,582	-		GFF3064	0.11	-0.8
3,136,582	-		GFF3064	0.11	+0.5
3,136,582	-		GFF3064	0.11	-0.9
3,136,582	-		GFF3064	0.11	+0.3
3,136,582	-		GFF3064	0.11	-0.6
3,136,584	+		GFF3064	0.12	-1.7
3,136,587	-		GFF3064	0.12	+1.5
3,136,592	-		GFF3064	0.14	+0.3
3,136,597	-		GFF3064	0.15	+0.4
3,136,599	+		GFF3064	0.16	-2.2
3,136,607	-		GFF3064	0.18	-0.9
3,136,630	-		GFF3064	0.25	-1.6
3,136,653	+		GFF3064	0.32	-1.2
3,136,653	+		GFF3064	0.32	-1.2
3,136,653	+		GFF3064	0.32	-0.5
3,136,653	+		GFF3064	0.32	-2.2
3,136,661	-		GFF3064	0.35	-0.4
3,136,726	+		GFF3064	0.55	-1.5
3,136,742	+		GFF3064	0.59	+0.9
3,136,754	+		GFF3064	0.63	+0.5
3,136,804	+		GFF3064	0.78	-0.2
3,136,804	+		GFF3064	0.78	-2.6
3,136,812	-		GFF3064	0.81	+0.8
3,136,821	-		GFF3064	0.83	-0.6
3,136,824	+		GFF3064	0.84	-2.4
3,136,831	+		GFF3064	0.86	-0.6
3,136,839	-		GFF3064	0.89	-0.7
3,136,843	-				-0.2
3,136,869	+				+0.2
3,136,869	+				-1.4
3,136,870	+				-0.4
3,136,870	+				+0.3
3,136,877	-				-0.1
3,136,877	-				+1.0
3,136,877	-				-0.7
3,136,877	-				+1.0
3,136,878	-				-0.7
3,136,878	-				+1.3
3,136,878	-				-1.5
3,136,899	-				-0.4
3,136,918	-				+0.5
3,136,946	-				-1.8
3,136,958	+				-0.7
3,136,958	-				-0.6
3,136,970	+				-2.1
3,136,974	-				-0.7
3,136,975	+				-1.7
3,136,978	-				-0.7
3,136,978	-				+0.3
3,136,983	-				-1.1
3,136,983	-				-1.2
3,136,997	-				+0.1
3,137,015	-				-0.9
3,137,025	+		GFF3065	0.11	+0.7
3,137,025	+		GFF3065	0.11	+0.9
3,137,033	-		GFF3065	0.13	+0.0
3,137,038	+		GFF3065	0.13	+0.4
3,137,039	-		GFF3065	0.14	-1.0
3,137,058	+		GFF3065	0.17	-0.1
3,137,066	-		GFF3065	0.18	+0.4
3,137,110	+		GFF3065	0.26	-0.8
3,137,110	+		GFF3065	0.26	-1.9
3,137,113	-		GFF3065	0.26	-1.2
3,137,118	-		GFF3065	0.27	+0.3
3,137,123	-		GFF3065	0.28	-1.2
3,137,140	+		GFF3065	0.31	-0.4
3,137,140	-		GFF3065	0.31	+0.1
3,137,161	+		GFF3065	0.35	+0.1
3,137,166	+		GFF3065	0.36	+0.2
3,137,168	+		GFF3065	0.36	-0.1
3,137,169	-		GFF3065	0.36	-0.8
3,137,169	-		GFF3065	0.36	+0.8
3,137,174	-		GFF3065	0.37	-0.8
3,137,175	+		GFF3065	0.37	-1.2
3,137,176	-		GFF3065	0.37	+0.6
3,137,190	+		GFF3065	0.40	+0.7
3,137,238	-		GFF3065	0.48	+0.9
3,137,240	+		GFF3065	0.48	+0.3
3,137,240	+		GFF3065	0.48	+0.1
3,137,240	+		GFF3065	0.48	-0.5
3,137,240	+		GFF3065	0.48	-0.5
3,137,240	+		GFF3065	0.48	-1.7
3,137,240	+		GFF3065	0.48	-1.7
3,137,240	+		GFF3065	0.48	+1.3
3,137,240	+		GFF3065	0.48	-1.6
3,137,240	+		GFF3065	0.48	+1.3
3,137,240	+		GFF3065	0.48	+0.6
3,137,240	+		GFF3065	0.48	-1.6
3,137,240	+		GFF3065	0.48	-1.4
3,137,240	-		GFF3065	0.48	-0.1
3,137,248	-		GFF3065	0.50	-0.8
3,137,248	-		GFF3065	0.50	+0.0
3,137,248	-		GFF3065	0.50	-0.6
3,137,248	-		GFF3065	0.50	-0.7
3,137,248	-		GFF3065	0.50	+0.2
3,137,248	-		GFF3065	0.50	+1.1
3,137,248	-		GFF3065	0.50	+0.2
3,137,248	-		GFF3065	0.50	-1.7
3,137,248	-		GFF3065	0.50	+0.4
3,137,248	-		GFF3065	0.50	-0.5
3,137,258	-		GFF3065	0.51	-1.1
3,137,271	-		GFF3065	0.54	-0.7
3,137,274	+		GFF3065	0.54	-1.3
3,137,274	+		GFF3065	0.54	+0.7
3,137,282	-		GFF3065	0.56	+0.2
3,137,320	+		GFF3065	0.62	-1.3
3,137,361	+		GFF3065	0.69	+0.6
3,137,363	+		GFF3065	0.70	+0.9
3,137,363	+		GFF3065	0.70	+0.5
3,137,369	-		GFF3065	0.71	+0.1
3,137,369	-		GFF3065	0.71	-0.3
3,137,370	+		GFF3065	0.71	-0.8
3,137,370	+		GFF3065	0.71	-0.3
3,137,371	-		GFF3065	0.71	-0.5
3,137,376	-		GFF3065	0.72	-0.1
3,137,378	-		GFF3065	0.72	-0.3
3,137,395	+		GFF3065	0.75	-1.1
3,137,403	-		GFF3065	0.77	-0.2
3,137,410	+		GFF3065	0.78	-1.5
3,137,418	-		GFF3065	0.79	-1.5
3,137,418	-		GFF3065	0.79	+1.0
3,137,429	+		GFF3065	0.81	+1.3
3,137,429	+		GFF3065	0.81	-0.7
3,137,429	+		GFF3065	0.81	+1.2
3,137,429	+		GFF3065	0.81	-1.8
3,137,429	+		GFF3065	0.81	+0.3
3,137,431	-		GFF3065	0.81	-0.5
3,137,434	+		GFF3065	0.82	-0.7
3,137,437	-		GFF3065	0.82	-0.3
3,137,437	-		GFF3065	0.82	+0.3
3,137,437	-		GFF3065	0.82	+0.8
3,137,449	-		GFF3065	0.84	+1.3
3,137,453	+		GFF3065	0.85	-0.5
3,137,457	+		GFF3065	0.86	+0.2
3,137,463	+		GFF3065	0.87	-0.5
3,137,465	-		GFF3065	0.87	-1.5
3,137,484	+				-1.0
3,137,484	+				-1.1
3,137,484	+				-1.5
3,137,484	+				+0.2
3,137,484	+				-0.9
3,137,487	+				-1.4
3,137,492	-				-1.8