Strain Fitness in Sphingobium sp. HT1-2 around GFF3061

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,133,494	+				-1.1
3,133,494	+				+0.9
3,133,494	+				+0.2
3,133,494	+				+0.9
3,133,494	+				+0.1
3,133,499	+				-0.9
3,133,502	-				-0.7
3,133,502	-				-1.2
3,133,502	-				-0.9
3,133,548	-		GFF3059	0.25	-1.6
3,133,550	+		GFF3059	0.25	-0.9
3,133,550	+		GFF3059	0.25	-2.9
3,133,558	-		GFF3059	0.28	-2.8
3,133,558	-		GFF3059	0.28	-2.0
3,133,558	-		GFF3059	0.28	-2.6
3,133,558	-		GFF3059	0.28	-2.4
3,133,575	-		GFF3059	0.34	-1.3
3,133,647	-		GFF3059	0.59	-0.8
3,133,667	-		GFF3059	0.66	-1.6
3,133,667	-		GFF3059	0.66	-2.5
3,133,697	+		GFF3059	0.76	-0.5
3,133,697	+		GFF3059	0.76	-0.0
3,133,697	+		GFF3059	0.76	-0.2
3,133,697	+		GFF3059	0.76	-0.2
3,133,697	+		GFF3059	0.76	-0.9
3,133,697	+		GFF3059	0.76	+1.6
3,133,705	-		GFF3059	0.79	-0.5
3,133,705	-		GFF3059	0.79	-2.7
3,133,705	-		GFF3059	0.79	-0.8
3,133,715	-		GFF3059	0.83	-1.7
3,133,715	-		GFF3059	0.83	-2.5
3,133,741	+				+0.3
3,133,758	+				+0.3
3,133,758	+				-0.2
3,133,758	+				-1.6
3,133,758	+				-0.7
3,133,761	-				-3.0
3,133,763	+				+0.4
3,133,765	+				-1.6
3,133,765	+				-0.5
3,133,765	+				-2.4
3,133,773	-				-2.5
3,133,775	+				-3.5
3,133,803	-				-3.0
3,133,806	+				-3.4
3,133,810	+				-2.0
3,133,814	-				-2.9
3,133,814	-				-2.8
3,133,815	+				+0.2
3,133,815	+				-2.8
3,133,815	+				-2.2
3,133,815	+				-2.5
3,133,815	+				-3.7
3,133,816	-				-2.1
3,133,818	-				-3.2
3,133,818	-				-3.2
3,133,818	-				-2.8
3,133,818	-				-2.5
3,133,818	-				-0.3
3,133,820	+				-1.8
3,133,820	+				-1.7
3,133,820	+				+0.6
3,133,823	-		GFF3060	0.10	-2.0
3,133,823	-		GFF3060	0.10	-2.1
3,133,823	-		GFF3060	0.10	-2.9
3,133,828	-		GFF3060	0.11	-0.6
3,133,828	-		GFF3060	0.11	-2.1
3,133,898	-		GFF3060	0.22	-3.4
3,133,972	-		GFF3060	0.34	-1.7
3,133,989	-		GFF3060	0.37	-1.3
3,134,029	-		GFF3060	0.44	-0.0
3,134,054	+		GFF3060	0.48	-1.8
3,134,061	+		GFF3060	0.49	-1.1
3,134,061	+		GFF3060	0.49	-0.7
3,134,061	+		GFF3060	0.49	-2.5
3,134,066	+		GFF3060	0.50	-3.4
3,134,083	+		GFF3060	0.52	-0.3
3,134,087	+		GFF3060	0.53	-2.8
3,134,117	-		GFF3060	0.58	-2.0
3,134,156	-		GFF3060	0.64	-2.0
3,134,194	-		GFF3060	0.70	-2.4
3,134,201	-		GFF3060	0.72	-1.6
3,134,229	+		GFF3060	0.76	-1.9
3,134,300	-		GFF3060	0.88	-3.5
3,134,345	-				-2.7
3,134,407	+				+1.7
3,134,407	+				+0.2
3,134,415	-				-0.6
3,134,436	-				-0.8
3,134,436	-				+0.0
3,134,510	+				-2.7
3,134,516	+				-2.2
3,134,528	-				-2.1
3,134,530	+				-1.7
3,134,531	+				+0.4
3,134,580	+		GFF3061	0.16	-1.5
3,134,654	+		GFF3061	0.26	-1.2
3,134,654	+		GFF3061	0.26	-1.5
3,134,673	-		GFF3061	0.28	-1.2
3,134,685	-		GFF3061	0.30	-1.8
3,134,744	+		GFF3061	0.38	-2.8
3,134,744	+		GFF3061	0.38	-1.8
3,134,752	-		GFF3061	0.39	-1.0
3,134,752	-		GFF3061	0.39	-4.1
3,134,752	-		GFF3061	0.39	-1.5
3,134,752	-		GFF3061	0.39	-2.3
3,134,752	-		GFF3061	0.39	-2.2
3,134,752	-		GFF3061	0.39	-2.0
3,134,752	-		GFF3061	0.39	-2.4
3,134,770	+		GFF3061	0.41	-2.6
3,134,778	-		GFF3061	0.43	-1.1
3,134,805	+		GFF3061	0.46	-1.9
3,134,826	-		GFF3061	0.49	-1.0
3,134,986	+		GFF3061	0.71	-0.3
3,134,988	+		GFF3061	0.71	-3.1
3,134,988	+		GFF3061	0.71	-2.2
3,134,988	+		GFF3061	0.71	-1.0
3,134,988	+		GFF3061	0.71	-2.0
3,134,988	+		GFF3061	0.71	-1.5
3,134,988	+		GFF3061	0.71	-2.0
3,134,988	+		GFF3061	0.71	-1.6
3,134,988	+		GFF3061	0.71	-0.2
3,134,988	+		GFF3061	0.71	-1.3
3,134,988	+		GFF3061	0.71	-1.7
3,134,996	-		GFF3061	0.72	-2.1
3,134,996	-		GFF3061	0.72	-2.5
3,134,996	-		GFF3061	0.72	-3.5
3,134,996	-		GFF3061	0.72	-2.4
3,134,996	-		GFF3061	0.72	-2.8
3,134,996	-		GFF3061	0.72	-2.4
3,134,996	-		GFF3061	0.72	-0.9
3,134,996	-		GFF3061	0.72	-2.8
3,135,032	+		GFF3061	0.77	-2.2
3,135,242	-				-2.1
3,135,242	-				-2.2
3,135,242	-				+0.5
3,135,242	-				+1.4
3,135,242	-				-0.4
3,135,242	-				+0.4
3,135,242	-				+0.5
3,135,242	-				-2.0
3,135,242	-				+0.4
3,135,242	-				-0.6
3,135,244	+				-1.3
3,135,247	-				-0.2
3,135,287	-				-0.8
3,135,339	+				-3.0
3,135,350	+				-2.6
3,135,358	-				-4.4
3,135,368	+				-2.3
3,135,375	+				-2.7
3,135,399	+		GFF3062	0.10	-2.4
3,135,406	-		GFF3062	0.11	-0.5
3,135,429	+		GFF3062	0.14	-2.2
3,135,437	-		GFF3062	0.15	-2.1
3,135,437	-		GFF3062	0.15	-1.4
3,135,437	-		GFF3062	0.15	-1.4
3,135,437	-		GFF3062	0.15	-2.7
3,135,443	-		GFF3062	0.16	-3.1
3,135,488	+		GFF3062	0.22	-1.8
3,135,488	+		GFF3062	0.22	-2.2
3,135,488	+		GFF3062	0.22	-2.3
3,135,488	+		GFF3062	0.22	-1.8
3,135,496	-		GFF3062	0.23	-3.8
3,135,496	-		GFF3062	0.23	-2.6
3,135,496	-		GFF3062	0.23	-2.2
3,135,508	+		GFF3062	0.24	-1.0
3,135,522	-		GFF3062	0.26	-3.0
3,135,538	-		GFF3062	0.28	-1.6
3,135,540	-		GFF3062	0.28	+0.1
3,135,576	-		GFF3062	0.33	-1.7
3,135,578	+		GFF3062	0.33	-1.8
3,135,586	-		GFF3062	0.35	-1.8
3,135,620	+		GFF3062	0.39	-2.3
3,135,693	+		GFF3062	0.48	-1.3
3,135,693	-		GFF3062	0.48	-3.2
3,135,701	-		GFF3062	0.50	-2.1
3,135,701	-		GFF3062	0.50	-2.0
3,135,732	-		GFF3062	0.54	-1.1
3,135,746	+		GFF3062	0.55	-0.5
3,135,771	+		GFF3062	0.59	-3.3
3,135,776	+		GFF3062	0.59	-0.7
3,135,793	-		GFF3062	0.62	-0.5
3,135,794	-		GFF3062	0.62	-2.1
3,135,813	+		GFF3062	0.64	-1.8
3,135,813	+		GFF3062	0.64	-0.7
3,135,814	-		GFF3062	0.64	-0.9
3,135,831	-		GFF3062	0.67	-3.2
3,135,857	+		GFF3062	0.70	-2.6
3,135,865	-		GFF3062	0.71	-1.9
3,135,867	+		GFF3062	0.71	-2.3
3,135,869	+		GFF3062	0.72	-3.4
3,135,869	+		GFF3062	0.72	-1.9
3,135,875	-		GFF3062	0.72	-1.1
3,135,877	-		GFF3062	0.73	-0.0
3,135,888	-		GFF3062	0.74	-1.9
3,135,965	-		GFF3062	0.84	-1.0
3,135,976	+		GFF3062	0.85	-2.8
3,135,977	-		GFF3062	0.86	-2.0
3,135,978	-		GFF3062	0.86	-2.1
3,135,978	-		GFF3062	0.86	-2.5
3,135,978	-		GFF3062	0.86	-2.4
3,135,984	-		GFF3062	0.87	-1.9
3,135,984	-		GFF3062	0.87	-2.8
3,135,991	+		GFF3062	0.87	-2.7
3,135,991	+		GFF3062	0.87	-3.1
3,136,171	+				+0.6