Strain Fitness in Sphingobium sp. HT1-2 around GFF3058

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,131,901	+		GFF3056	0.48	+0.1
3,131,901	+		GFF3056	0.48	-1.5
3,131,911	+		GFF3056	0.50	+0.1
3,131,944	+		GFF3056	0.54	-1.9
3,131,951	+		GFF3056	0.55	+1.5
3,131,956	+		GFF3056	0.56	+1.0
3,131,956	+		GFF3056	0.56	+0.2
3,131,977	-		GFF3056	0.59	+0.1
3,132,005	-		GFF3056	0.63	+0.8
3,132,007	-		GFF3056	0.63	-0.8
3,132,046	-		GFF3056	0.69	-0.6
3,132,068	+		GFF3056	0.72	-0.5
3,132,068	+		GFF3056	0.72	+1.2
3,132,068	+		GFF3056	0.72	-0.3
3,132,068	+		GFF3056	0.72	-0.0
3,132,068	+		GFF3056	0.72	-0.2
3,132,068	+		GFF3056	0.72	+0.3
3,132,076	-		GFF3056	0.73	-1.7
3,132,076	-		GFF3056	0.73	-2.0
3,132,076	-		GFF3056	0.73	+0.2
3,132,076	-		GFF3056	0.73	-0.3
3,132,076	-		GFF3056	0.73	-0.7
3,132,076	-		GFF3056	0.73	-0.1
3,132,133	+		GFF3056	0.82	+0.3
3,132,140	+		GFF3056	0.83	+0.7
3,132,140	+		GFF3056	0.83	-0.5
3,132,140	+		GFF3056	0.83	+0.7
3,132,140	+		GFF3056	0.83	-0.0
3,132,145	+		GFF3056	0.83	-0.4
3,132,148	-		GFF3056	0.84	-0.7
3,132,148	-		GFF3056	0.84	+0.6
3,132,150	+		GFF3056	0.84	+0.8
3,132,207	-				-1.7
3,132,375	-		GFF3057	0.19	+0.9
3,132,398	+		GFF3057	0.23	-0.5
3,132,523	-		GFF3057	0.50	-0.4
3,132,556	+		GFF3057	0.57	-0.0
3,132,583	-		GFF3057	0.62	+0.4
3,132,603	-		GFF3057	0.66	-1.0
3,132,664	+		GFF3057	0.79	-0.9
3,132,696	-		GFF3057	0.86	+0.2
3,132,696	-		GFF3057	0.86	-0.2
3,132,732	+				-0.5
3,132,750	+				-0.4
3,132,774	-				-0.3
3,132,795	+				+1.3
3,132,799	+				-0.3
3,132,803	-				-0.1
3,132,843	+				-0.2
3,132,845	+				-2.0
3,132,847	+				+0.9
3,132,853	-				-1.5
3,132,861	-				-1.5
3,132,870	+				-3.1
3,132,881	+				-2.0
3,132,881	+				-1.0
3,132,934	+		GFF3058	0.12	-1.0
3,132,941	-		GFF3058	0.14	-1.8
3,132,941	-		GFF3058	0.14	-2.4
3,132,971	+		GFF3058	0.19	-1.7
3,132,972	-		GFF3058	0.19	-1.5
3,133,016	+		GFF3058	0.26	-2.8
3,133,024	-		GFF3058	0.28	-1.7
3,133,039	+		GFF3058	0.30	-2.9
3,133,049	+		GFF3058	0.32	-2.8
3,133,057	-		GFF3058	0.33	-1.5
3,133,057	-		GFF3058	0.33	-1.8
3,133,058	-		GFF3058	0.34	-1.7
3,133,059	+		GFF3058	0.34	-1.2
3,133,063	+		GFF3058	0.34	-2.2
3,133,064	+		GFF3058	0.35	-2.6
3,133,089	+		GFF3058	0.39	-2.0
3,133,092	-		GFF3058	0.39	-0.6
3,133,094	+		GFF3058	0.40	-1.5
3,133,094	+		GFF3058	0.40	-1.6
3,133,102	-		GFF3058	0.41	-3.1
3,133,102	-		GFF3058	0.41	-1.9
3,133,102	-		GFF3058	0.41	-3.4
3,133,102	-		GFF3058	0.41	-1.9
3,133,128	-		GFF3058	0.45	-2.5
3,133,169	-		GFF3058	0.52	-3.3
3,133,172	+		GFF3058	0.53	-0.7
3,133,195	+		GFF3058	0.57	-1.6
3,133,196	+		GFF3058	0.57	-2.7
3,133,196	+		GFF3058	0.57	-2.0
3,133,196	+		GFF3058	0.57	-2.9
3,133,201	+		GFF3058	0.58	-1.6
3,133,204	-		GFF3058	0.58	-1.2
3,133,217	+		GFF3058	0.61	+0.1
3,133,217	+		GFF3058	0.61	-3.5
3,133,223	-		GFF3058	0.62	-1.3
3,133,227	-		GFF3058	0.62	-1.0
3,133,279	+		GFF3058	0.71	-1.9
3,133,279	+		GFF3058	0.71	-1.8
3,133,283	+		GFF3058	0.72	-3.1
3,133,284	+		GFF3058	0.72	-2.8
3,133,287	-		GFF3058	0.72	-0.6
3,133,291	-		GFF3058	0.73	-2.0
3,133,317	-		GFF3058	0.78	-2.8
3,133,319	+		GFF3058	0.78	-2.2
3,133,319	+		GFF3058	0.78	-1.2
3,133,322	-		GFF3058	0.78	-1.2
3,133,365	+		GFF3058	0.86	-2.1
3,133,365	+		GFF3058	0.86	-2.0
3,133,373	-		GFF3058	0.87	-1.1
3,133,373	-		GFF3058	0.87	-2.2
3,133,373	-		GFF3058	0.87	-0.0
3,133,373	-		GFF3058	0.87	-2.3
3,133,373	-		GFF3058	0.87	-0.2
3,133,382	+		GFF3058	0.89	-1.9
3,133,390	-				-3.2
3,133,390	-				-1.3
3,133,392	+				-2.7
3,133,397	-				+1.0
3,133,400	-				-1.8
3,133,400	-				-2.8
3,133,413	+				-1.3
3,133,414	-				-0.0
3,133,430	+				+0.1
3,133,437	+				-1.1
3,133,439	-				-2.5
3,133,450	-				-0.2
3,133,450	-				+0.7
3,133,494	+				-1.1
3,133,494	+				+0.9
3,133,494	+				+0.2
3,133,494	+				+0.9
3,133,494	+				+0.1
3,133,499	+				-0.9
3,133,502	-				-0.7
3,133,502	-				-1.2
3,133,502	-				-0.9
3,133,548	-		GFF3059	0.25	-1.6
3,133,550	+		GFF3059	0.25	-0.9
3,133,550	+		GFF3059	0.25	-2.9
3,133,558	-		GFF3059	0.28	-2.8
3,133,558	-		GFF3059	0.28	-2.0
3,133,558	-		GFF3059	0.28	-2.6
3,133,558	-		GFF3059	0.28	-2.4
3,133,575	-		GFF3059	0.34	-1.3
3,133,647	-		GFF3059	0.59	-0.8
3,133,667	-		GFF3059	0.66	-1.6
3,133,667	-		GFF3059	0.66	-2.5
3,133,697	+		GFF3059	0.76	-0.5
3,133,697	+		GFF3059	0.76	-0.0
3,133,697	+		GFF3059	0.76	-0.2
3,133,697	+		GFF3059	0.76	-0.2
3,133,697	+		GFF3059	0.76	-0.9
3,133,697	+		GFF3059	0.76	+1.6
3,133,705	-		GFF3059	0.79	-0.5
3,133,705	-		GFF3059	0.79	-2.7
3,133,705	-		GFF3059	0.79	-0.8
3,133,715	-		GFF3059	0.83	-1.7
3,133,715	-		GFF3059	0.83	-2.5
3,133,741	+				+0.3
3,133,758	+				+0.3
3,133,758	+				-0.2
3,133,758	+				-1.6
3,133,758	+				-0.7
3,133,761	-				-3.0
3,133,763	+				+0.4
3,133,765	+				-1.6
3,133,765	+				-0.5
3,133,765	+				-2.4
3,133,773	-				-2.5
3,133,775	+				-3.5
3,133,803	-				-3.0
3,133,806	+				-3.4
3,133,810	+				-2.0
3,133,814	-				-2.9
3,133,814	-				-2.8
3,133,815	+				+0.2
3,133,815	+				-2.8
3,133,815	+				-2.2
3,133,815	+				-2.5
3,133,815	+				-3.7
3,133,816	-				-2.1
3,133,818	-				-3.2
3,133,818	-				-3.2
3,133,818	-				-2.8
3,133,818	-				-2.5
3,133,818	-				-0.3
3,133,820	+				-1.8
3,133,820	+				-1.7
3,133,820	+				+0.6
3,133,823	-		GFF3060	0.10	-2.0
3,133,823	-		GFF3060	0.10	-2.1
3,133,823	-		GFF3060	0.10	-2.9
3,133,828	-		GFF3060	0.11	-0.6
3,133,828	-		GFF3060	0.11	-2.1
3,133,898	-		GFF3060	0.22	-3.4
3,133,972	-		GFF3060	0.34	-1.7
3,133,989	-		GFF3060	0.37	-1.3
3,134,029	-		GFF3060	0.44	-0.0
3,134,054	+		GFF3060	0.48	-1.8
3,134,061	+		GFF3060	0.49	-1.1
3,134,061	+		GFF3060	0.49	-0.7
3,134,061	+		GFF3060	0.49	-2.5
3,134,066	+		GFF3060	0.50	-3.4
3,134,083	+		GFF3060	0.52	-0.3
3,134,087	+		GFF3060	0.53	-2.8
3,134,117	-		GFF3060	0.58	-2.0
3,134,156	-		GFF3060	0.64	-2.0
3,134,194	-		GFF3060	0.70	-2.4
3,134,201	-		GFF3060	0.72	-1.6
3,134,229	+		GFF3060	0.76	-1.9
3,134,300	-		GFF3060	0.88	-3.5
3,134,345	-				-2.7
3,134,407	+				+1.7
3,134,407	+				+0.2
3,134,415	-				-0.6
3,134,436	-				-0.8
3,134,436	-				+0.0