Strain Fitness in Sphingobium sp. HT1-2 around GFF30

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF28 and GFF29 are separated by 330 nucleotidesGFF29 and GFF30 overlap by 1 nucleotidesGFF30 and GFF31 are separated by 299 nucleotidesGFF31 and GFF32 are separated by 77 nucleotidesGFF32 and GFF33 are separated by 98 nucleotidesGFF33 and GFF34 are separated by 62 nucleotides GFF28 - hypothetical protein, at 25,314 to 25,427 GFF28 GFF29 - hypothetical protein, at 25,758 to 26,288 GFF29 GFF30 - hypothetical protein, at 26,288 to 26,803 GFF30 GFF31 - Phage lysin (EC 3.2.1.17) # Phage lysozyme or muramidase (EC 3.2.1.17), at 27,103 to 27,312 GFF31 GFF32 - hypothetical protein, at 27,390 to 27,506 GFF32 GFF33 - hypothetical protein, at 27,605 to 27,721 GFF33 GFF34 - hypothetical protein, at 27,784 to 27,912 GFF34 Position (kb) 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.371 kb on + strand, within GFF28at 25.405 kb on + strand, within GFF28at 25.405 kb on + strand, within GFF28at 25.415 kb on + strand, within GFF28at 25.415 kb on + strand, within GFF28at 25.419 kb on + strandat 25.419 kb on + strandat 25.420 kb on + strandat 25.424 kb on + strandat 25.424 kb on + strandat 25.428 kb on - strandat 25.428 kb on - strandat 25.432 kb on - strandat 25.433 kb on - strandat 25.433 kb on - strandat 25.437 kb on - strandat 25.437 kb on - strandat 25.480 kb on + strandat 25.492 kb on + strandat 25.521 kb on + strandat 25.524 kb on + strandat 25.524 kb on - strandat 25.538 kb on + strandat 25.538 kb on + strandat 25.539 kb on - strandat 25.557 kb on + strandat 25.578 kb on - strandat 25.578 kb on - strandat 25.594 kb on + strandat 25.614 kb on + strandat 25.614 kb on + strandat 25.614 kb on + strandat 25.622 kb on - strandat 25.622 kb on - strandat 25.634 kb on + strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.775 kb on + strandat 25.783 kb on - strandat 25.818 kb on - strand, within GFF29at 25.831 kb on - strand, within GFF29at 25.841 kb on + strand, within GFF29at 25.844 kb on + strand, within GFF29at 25.849 kb on + strand, within GFF29at 25.849 kb on + strand, within GFF29at 25.857 kb on - strand, within GFF29at 25.857 kb on - strand, within GFF29at 25.857 kb on - strand, within GFF29at 25.857 kb on - strand, within GFF29at 25.857 kb on - strand, within GFF29at 25.857 kb on - strand, within GFF29at 25.892 kb on + strand, within GFF29at 25.892 kb on + strand, within GFF29at 25.892 kb on + strand, within GFF29at 25.900 kb on - strand, within GFF29at 25.934 kb on + strand, within GFF29at 25.939 kb on + strand, within GFF29at 25.939 kb on + strand, within GFF29at 25.939 kb on + strand, within GFF29at 25.947 kb on - strand, within GFF29at 25.947 kb on - strand, within GFF29at 25.947 kb on - strand, within GFF29at 25.947 kb on - strand, within GFF29at 25.947 kb on - strand, within GFF29at 25.947 kb on - strand, within GFF29at 25.949 kb on + strand, within GFF29at 25.949 kb on + strand, within GFF29at 25.949 kb on + strand, within GFF29at 25.949 kb on + strand, within GFF29at 25.952 kb on - strand, within GFF29at 25.957 kb on - strand, within GFF29at 25.959 kb on + strand, within GFF29at 25.965 kb on + strand, within GFF29at 25.981 kb on + strand, within GFF29at 26.004 kb on - strand, within GFF29at 26.004 kb on - strand, within GFF29at 26.006 kb on + strand, within GFF29at 26.025 kb on + strand, within GFF29at 26.025 kb on + strand, within GFF29at 26.033 kb on - strand, within GFF29at 26.033 kb on - strand, within GFF29at 26.033 kb on - strand, within GFF29at 26.073 kb on - strand, within GFF29at 26.088 kb on + strand, within GFF29at 26.098 kb on - strand, within GFF29at 26.103 kb on - strand, within GFF29at 26.108 kb on + strand, within GFF29at 26.149 kb on - strand, within GFF29at 26.172 kb on + strand, within GFF29at 26.172 kb on + strand, within GFF29at 26.172 kb on + strand, within GFF29at 26.172 kb on + strand, within GFF29at 26.180 kb on - strand, within GFF29at 26.180 kb on - strand, within GFF29at 26.180 kb on - strand, within GFF29at 26.211 kb on + strand, within GFF29at 26.216 kb on + strand, within GFF29at 26.219 kb on - strand, within GFF29at 26.219 kb on - strand, within GFF29at 26.219 kb on - strand, within GFF29at 26.246 kb on + strandat 26.254 kb on - strandat 26.254 kb on - strandat 26.263 kb on - strandat 26.278 kb on - strandat 26.278 kb on - strandat 26.278 kb on - strandat 26.278 kb on - strandat 26.467 kb on + strand, within GFF30at 26.467 kb on + strand, within GFF30at 26.488 kb on + strand, within GFF30at 26.502 kb on + strand, within GFF30at 26.515 kb on + strand, within GFF30at 26.517 kb on + strand, within GFF30at 26.535 kb on + strand, within GFF30at 26.535 kb on + strand, within GFF30at 26.538 kb on - strand, within GFF30at 26.538 kb on - strand, within GFF30at 26.538 kb on - strand, within GFF30at 26.543 kb on - strand, within GFF30at 26.543 kb on - strand, within GFF30at 26.553 kb on - strand, within GFF30at 26.577 kb on + strand, within GFF30at 26.580 kb on - strand, within GFF30at 26.592 kb on + strand, within GFF30at 26.592 kb on + strand, within GFF30at 26.593 kb on - strand, within GFF30at 26.642 kb on + strand, within GFF30at 26.650 kb on - strand, within GFF30at 26.650 kb on - strand, within GFF30at 26.650 kb on - strand, within GFF30at 26.655 kb on + strand, within GFF30at 26.685 kb on - strand, within GFF30at 26.952 kb on + strandat 26.981 kb on + strandat 26.987 kb on + strandat 26.994 kb on - strandat 27.004 kb on - strandat 27.026 kb on + strandat 27.026 kb on - strandat 27.111 kb on + strandat 27.127 kb on + strand, within GFF31at 27.135 kb on - strand, within GFF31at 27.137 kb on - strand, within GFF31at 27.197 kb on + strand, within GFF31at 27.200 kb on - strand, within GFF31at 27.205 kb on + strand, within GFF31at 27.256 kb on + strand, within GFF31at 27.256 kb on + strand, within GFF31at 27.264 kb on - strand, within GFF31at 27.278 kb on - strand, within GFF31at 27.309 kb on - strandat 27.340 kb on - strandat 27.369 kb on - strandat 27.388 kb on + strandat 27.396 kb on - strandat 27.396 kb on - strandat 27.396 kb on - strandat 27.407 kb on + strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.410 kb on - strand, within GFF32at 27.441 kb on + strand, within GFF32at 27.556 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.591 kb on + strandat 27.599 kb on - strandat 27.599 kb on - strandat 27.606 kb on + strandat 27.650 kb on - strand, within GFF33at 27.700 kb on - strand, within GFF33at 27.713 kb on - strandat 27.729 kb on + strandat 27.731 kb on - strandat 27.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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25,371 + GFF28 0.50 +1.9
25,405 + GFF28 0.80 +1.4
25,405 + GFF28 0.80 -0.0
25,415 + GFF28 0.89 -1.6
25,415 + GFF28 0.89 +0.2
25,419 + +0.9
25,419 + -0.3
25,420 + +0.3
25,424 + +0.2
25,424 + -0.8
25,428 - -0.3
25,428 - +2.0
25,432 - +0.0
25,433 - +0.4
25,433 - +0.3
25,437 - -1.3
25,437 - -0.0
25,480 + +0.2
25,492 + -1.6
25,521 + -1.7
25,524 + -0.5
25,524 - -0.4
25,538 + +0.5
25,538 + +0.5
25,539 - +0.1
25,557 + +0.8
25,578 - -2.9
25,578 - +1.3
25,594 + +0.3
25,614 + +0.3
25,614 + -1.5
25,614 + +1.1
25,622 - +0.1
25,622 - -0.2
25,634 + +0.4
25,644 - -0.4
25,644 - -0.2
25,775 + -1.0
25,783 - +0.2
25,818 - GFF29 0.11 +1.3
25,831 - GFF29 0.14 -0.4
25,841 + GFF29 0.16 +1.7
25,844 + GFF29 0.16 -1.1
25,849 + GFF29 0.17 +0.6
25,849 + GFF29 0.17 +0.6
25,857 - GFF29 0.19 -0.9
25,857 - GFF29 0.19 +0.3
25,857 - GFF29 0.19 +1.1
25,857 - GFF29 0.19 -0.1
25,857 - GFF29 0.19 -0.2
25,857 - GFF29 0.19 +0.3
25,892 + GFF29 0.25 +1.1
25,892 + GFF29 0.25 -0.3
25,892 + GFF29 0.25 -1.7
25,900 - GFF29 0.27 -0.6
25,934 + GFF29 0.33 -0.9
25,939 + GFF29 0.34 -1.9
25,939 + GFF29 0.34 +0.6
25,939 + GFF29 0.34 +1.5
25,947 - GFF29 0.36 +0.8
25,947 - GFF29 0.36 +0.6
25,947 - GFF29 0.36 +1.0
25,947 - GFF29 0.36 +0.4
25,947 - GFF29 0.36 -0.2
25,947 - GFF29 0.36 +0.2
25,949 + GFF29 0.36 +0.5
25,949 + GFF29 0.36 -0.6
25,949 + GFF29 0.36 -2.0
25,949 + GFF29 0.36 +0.2
25,952 - GFF29 0.37 +0.7
25,957 - GFF29 0.37 +0.5
25,959 + GFF29 0.38 -0.4
25,965 + GFF29 0.39 -0.2
25,981 + GFF29 0.42 -0.0
26,004 - GFF29 0.46 -0.0
26,004 - GFF29 0.46 +0.3
26,006 + GFF29 0.47 -0.3
26,025 + GFF29 0.50 -0.4
26,025 + GFF29 0.50 -0.8
26,033 - GFF29 0.52 -0.5
26,033 - GFF29 0.52 +1.0
26,033 - GFF29 0.52 +0.7
26,073 - GFF29 0.59 -0.6
26,088 + GFF29 0.62 -1.0
26,098 - GFF29 0.64 -0.5
26,103 - GFF29 0.65 +0.9
26,108 + GFF29 0.66 -0.6
26,149 - GFF29 0.74 +1.1
26,172 + GFF29 0.78 +2.5
26,172 + GFF29 0.78 -2.0
26,172 + GFF29 0.78 -1.7
26,172 + GFF29 0.78 -1.5
26,180 - GFF29 0.79 -0.8
26,180 - GFF29 0.79 +1.5
26,180 - GFF29 0.79 +1.4
26,211 + GFF29 0.85 +0.1
26,216 + GFF29 0.86 +1.5
26,219 - GFF29 0.87 +0.2
26,219 - GFF29 0.87 -0.3
26,219 - GFF29 0.87 -0.2
26,246 + +0.7
26,254 - -0.2
26,254 - +0.5
26,263 - +0.1
26,278 - +0.1
26,278 - +0.1
26,278 - -0.5
26,278 - +0.6
26,467 + GFF30 0.35 +0.6
26,467 + GFF30 0.35 +1.0
26,488 + GFF30 0.39 -1.2
26,502 + GFF30 0.41 +1.5
26,515 + GFF30 0.44 +0.9
26,517 + GFF30 0.44 -0.4
26,535 + GFF30 0.48 +0.0
26,535 + GFF30 0.48 +0.1
26,538 - GFF30 0.48 +0.4
26,538 - GFF30 0.48 +0.7
26,538 - GFF30 0.48 +1.2
26,543 - GFF30 0.49 +1.1
26,543 - GFF30 0.49 -0.0
26,553 - GFF30 0.51 -0.2
26,577 + GFF30 0.56 +0.1
26,580 - GFF30 0.57 +0.9
26,592 + GFF30 0.59 -1.5
26,592 + GFF30 0.59 +0.3
26,593 - GFF30 0.59 +0.9
26,642 + GFF30 0.69 -1.2
26,650 - GFF30 0.70 -0.3
26,650 - GFF30 0.70 +0.8
26,650 - GFF30 0.70 +0.8
26,655 + GFF30 0.71 -0.2
26,685 - GFF30 0.77 -0.6
26,952 + -1.1
26,981 + -1.2
26,987 + +1.1
26,994 - +0.4
27,004 - +0.2
27,026 + +0.9
27,026 - -0.1
27,111 + -0.3
27,127 + GFF31 0.11 -0.7
27,135 - GFF31 0.15 -0.0
27,137 - GFF31 0.16 -0.4
27,197 + GFF31 0.45 +0.3
27,200 - GFF31 0.46 +0.7
27,205 + GFF31 0.49 -0.0
27,256 + GFF31 0.73 +0.1
27,256 + GFF31 0.73 +0.1
27,264 - GFF31 0.77 +0.1
27,278 - GFF31 0.83 +0.1
27,309 - +0.2
27,340 - +1.5
27,369 - +0.6
27,388 + -0.7
27,396 - -0.4
27,396 - -1.6
27,396 - -0.1
27,407 + GFF32 0.15 +0.4
27,410 - GFF32 0.17 +0.2
27,410 - GFF32 0.17 -0.9
27,410 - GFF32 0.17 -1.2
27,410 - GFF32 0.17 +1.3
27,441 + GFF32 0.44 +0.6
27,556 + +0.7
27,591 + -1.6
27,591 + -2.2
27,591 + +0.3
27,591 + +0.1
27,591 + +1.3
27,591 + -1.5
27,599 - -0.2
27,599 - +1.3
27,606 + -1.6
27,650 - GFF33 0.38 -0.6
27,700 - GFF33 0.81 -1.8
27,713 - +1.1
27,729 + -1.1
27,731 - -0.4
27,731 - +0.4

Or see this region's nucleotide sequence