Strain Fitness in Sphingobium sp. HT1-2 around GFF2957

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,018,691	-		GFF2953	0.17	-1.5
3,018,691	-		GFF2953	0.17	+0.1
3,018,693	+		GFF2953	0.18	-0.7
3,018,701	-		GFF2953	0.20	-0.6
3,018,722	-		GFF2953	0.24	-0.6
3,018,729	+		GFF2953	0.26	+0.4
3,018,729	+		GFF2953	0.26	+0.5
3,018,729	+		GFF2953	0.26	-1.4
3,018,736	-		GFF2953	0.27	-2.3
3,018,737	-		GFF2953	0.27	+0.6
3,018,737	-		GFF2953	0.27	-0.6
3,018,755	+		GFF2953	0.31	+0.9
3,018,763	-		GFF2953	0.33	+0.1
3,018,784	-		GFF2953	0.38	-0.3
3,018,788	+		GFF2953	0.39	-1.2
3,018,789	-		GFF2953	0.39	+0.1
3,018,800	+		GFF2953	0.41	-0.5
3,018,817	+		GFF2953	0.45	-1.3
3,018,817	+		GFF2953	0.45	+0.0
3,018,817	+		GFF2953	0.45	-1.0
3,018,817	+		GFF2953	0.45	-1.1
3,018,825	-		GFF2953	0.47	+0.3
3,018,825	-		GFF2953	0.47	-0.8
3,018,825	-		GFF2953	0.47	-1.8
3,018,826	-		GFF2953	0.47	+0.6
3,018,828	+		GFF2953	0.47	-0.2
3,018,828	+		GFF2953	0.47	-0.9
3,018,828	+		GFF2953	0.47	+0.1
3,018,828	+		GFF2953	0.47	+0.2
3,018,828	+		GFF2953	0.47	-0.2
3,018,828	+		GFF2953	0.47	+0.2
3,018,836	-		GFF2953	0.49	-0.4
3,018,836	-		GFF2953	0.49	-0.1
3,018,836	-		GFF2953	0.49	-0.8
3,018,850	+		GFF2953	0.52	-0.5
3,018,852	+		GFF2953	0.53	+0.7
3,018,852	+		GFF2953	0.53	+0.1
3,018,860	-		GFF2953	0.54	+0.4
3,018,860	-		GFF2953	0.54	-1.0
3,018,871	+		GFF2953	0.57	-0.6
3,018,876	+		GFF2953	0.58	-0.6
3,018,897	+		GFF2953	0.62	+0.7
3,018,897	+		GFF2953	0.62	-1.0
3,018,914	+		GFF2953	0.66	-1.3
3,018,914	+		GFF2953	0.66	+0.7
3,018,922	-		GFF2953	0.68	-0.6
3,018,922	-		GFF2953	0.68	+0.0
3,018,924	+		GFF2953	0.68	-0.4
3,018,935	+		GFF2953	0.71	-0.6
3,018,935	+		GFF2953	0.71	+0.0
3,018,939	-		GFF2953	0.71	-2.4
3,018,973	+		GFF2953	0.79	-0.2
3,018,978	+		GFF2953	0.80	-0.7
3,018,981	-		GFF2953	0.81	+0.4
3,018,981	-		GFF2953	0.81	-0.3
3,018,981	-		GFF2953	0.81	-0.6
3,019,036	-				+0.9
3,019,049	-				+0.6
3,019,085	+				+0.1
3,019,107	+				+0.5
3,019,115	-				-1.9
3,019,117	-				-0.5
3,019,145	-				+0.3
3,019,154	+				+0.1
3,019,154	+				-0.9
3,019,154	+				-0.6
3,019,162	-				-1.7
3,019,162	-				+0.7
3,019,162	-				+0.4
3,019,162	-				+0.5
3,019,173	-				+0.6
3,019,177	+				-0.4
3,019,177	+				+0.4
3,019,182	+		GFF2954	0.13	-1.3
3,019,182	+		GFF2954	0.13	-1.6
3,019,182	+		GFF2954	0.13	-1.3
3,019,182	+		GFF2954	0.13	-0.1
3,019,182	+		GFF2954	0.13	-0.5
3,019,182	+		GFF2954	0.13	+0.8
3,019,182	+		GFF2954	0.13	-0.8
3,019,182	+		GFF2954	0.13	+0.1
3,019,185	-		GFF2954	0.16	+0.1
3,019,185	-		GFF2954	0.16	+0.5
3,019,190	-		GFF2954	0.20	-0.7
3,019,190	-		GFF2954	0.20	+0.9
3,019,190	-		GFF2954	0.20	-0.3
3,019,190	-		GFF2954	0.20	+0.4
3,019,190	-		GFF2954	0.20	-1.5
3,019,204	+		GFF2954	0.32	-0.1
3,019,204	+		GFF2954	0.32	+0.6
3,019,212	-		GFF2954	0.38	+0.2
3,019,212	-		GFF2954	0.38	-1.2
3,019,212	-		GFF2954	0.38	-2.3
3,019,212	-		GFF2954	0.38	+0.7
3,019,212	-		GFF2954	0.38	-0.2
3,019,212	-		GFF2954	0.38	-1.1
3,019,215	-		GFF2954	0.41	+0.3
3,019,229	+		GFF2954	0.53	-2.3
3,019,229	+		GFF2954	0.53	-0.7
3,019,232	-		GFF2954	0.55	+0.1
3,019,234	+		GFF2954	0.57	+1.4
3,019,234	+		GFF2954	0.57	-1.3
3,019,234	+		GFF2954	0.57	-1.0
3,019,242	+		GFF2954	0.63	+0.0
3,019,242	-		GFF2954	0.63	-1.5
3,019,247	-		GFF2954	0.68	-1.3
3,019,257	+		GFF2954	0.76	-0.8
3,019,257	+		GFF2954	0.76	-0.9
3,019,257	+		GFF2954	0.76	-0.4
3,019,257	+		GFF2954	0.76	+0.0
3,019,265	-		GFF2954	0.82	+0.1
3,019,265	-		GFF2954	0.82	+0.3
3,019,265	-		GFF2954	0.82	-0.4
3,019,265	-		GFF2954	0.82	+0.5
3,019,265	-		GFF2954	0.82	+0.1
3,019,270	-		GFF2954	0.87	-0.8
3,019,270	-		GFF2954	0.87	-1.7
3,019,270	-		GFF2954	0.87	+0.8
3,019,272	+		GFF2954	0.88	+0.3
3,019,272	+		GFF2954	0.88	+0.4
3,019,275	-				+0.9
3,019,275	-				-0.9
3,019,275	-				-0.2
3,019,275	-				+1.7
3,019,280	-				-0.3
3,019,280	-				-0.9
3,019,295	+				-1.4
3,019,295	+				-1.0
3,019,303	-				-0.5
3,019,310	+		GFF2955	0.11	-0.4
3,019,310	+		GFF2955	0.11	-1.0
3,019,310	+		GFF2955	0.11	-0.3
3,019,314	+		GFF2955	0.13	+0.4
3,019,314	+		GFF2955	0.13	-1.8
3,019,314	+		GFF2955	0.13	+2.2
3,019,314	+		GFF2955	0.13	-2.0
3,019,314	+		GFF2955	0.13	-0.4
3,019,314	+		GFF2955	0.13	+0.0
3,019,314	+		GFF2955	0.13	+0.1
3,019,318	-		GFF2955	0.14	+0.2
3,019,318	-		GFF2955	0.14	+0.8
3,019,318	-		GFF2955	0.14	+1.1
3,019,329	+		GFF2955	0.18	-1.4
3,019,348	+		GFF2955	0.26	-0.1
3,019,355	-		GFF2955	0.29	-0.6
3,019,355	-		GFF2955	0.29	+0.5
3,019,366	+		GFF2955	0.33	-0.2
3,019,375	+		GFF2955	0.36	+0.7
3,019,375	+		GFF2955	0.36	+0.5
3,019,375	+		GFF2955	0.36	-0.3
3,019,380	+		GFF2955	0.38	-1.0
3,019,388	-		GFF2955	0.42	-0.4
3,019,388	-		GFF2955	0.42	+0.6
3,019,426	+		GFF2955	0.56	+1.1
3,019,434	-		GFF2955	0.60	+0.2
3,019,436	+		GFF2955	0.60	-0.8
3,019,438	+		GFF2955	0.61	-0.3
3,019,458	-		GFF2955	0.69	+0.7
3,019,458	-		GFF2955	0.69	-0.3
3,019,482	-		GFF2955	0.78	-0.5
3,019,487	-		GFF2955	0.80	-0.8
3,019,516	-				-0.6
3,019,519	-				-0.4
3,019,521	-				-0.2
3,019,527	+				-0.5
3,019,527	+				-0.2
3,019,527	+				-1.3
3,019,527	+				-0.1
3,019,535	-				-0.0
3,019,535	-				+0.4
3,019,535	-				-1.3
3,019,551	+		GFF2956	0.11	+0.3
3,019,561	+		GFF2956	0.17	-0.1
3,019,577	-		GFF2956	0.27	-0.1
3,019,611	-		GFF2956	0.47	+0.0
3,019,628	-		GFF2956	0.58	+0.7
3,019,628	-		GFF2956	0.58	+0.1
3,019,639	+		GFF2956	0.64	-0.9
3,019,639	+		GFF2956	0.64	-0.1
3,019,644	+		GFF2956	0.67	-1.6
3,019,644	+		GFF2956	0.67	-0.1
3,019,644	+		GFF2956	0.67	+1.4
3,019,647	-		GFF2956	0.69	-1.1
3,019,647	-		GFF2956	0.69	+0.7
3,019,647	-		GFF2956	0.69	-0.3
3,019,647	-		GFF2956	0.69	+0.9
3,019,647	-		GFF2956	0.69	+0.4
3,019,652	-		GFF2956	0.72	+0.1
3,019,652	-		GFF2956	0.72	-0.7
3,019,661	+		GFF2956	0.78	-0.5
3,019,672	+		GFF2956	0.84	+1.9
3,019,672	+		GFF2956	0.84	-0.3
3,019,680	-		GFF2956	0.89	+1.6
3,019,681	+				-0.0
3,019,685	-				-1.7
3,019,691	+				+0.0
3,019,692	+				-1.8
3,019,714	+				-0.5
3,019,714	+				-1.5
3,019,714	+				-1.6
3,019,714	+				-0.7
3,019,722	+				+0.5
3,019,722	-				-0.1
3,019,722	-				+0.4
3,019,722	-				-1.9
3,019,722	-				+2.1
3,019,732	-				-0.4
3,019,740	-		GFF2957	0.10	+0.8
3,019,765	+		GFF2957	0.16	+0.4
3,019,765	+		GFF2957	0.16	-0.3
3,019,765	+		GFF2957	0.16	-0.3
3,019,765	+		GFF2957	0.16	+0.2
3,019,773	-		GFF2957	0.17	-1.4
3,019,773	-		GFF2957	0.17	+0.7
3,019,773	-		GFF2957	0.17	-0.7
3,019,773	-		GFF2957	0.17	+0.1
3,019,773	-		GFF2957	0.17	-0.4
3,019,773	-		GFF2957	0.17	+0.9
3,019,784	+		GFF2957	0.20	+0.8
3,019,792	-		GFF2957	0.21	-0.8
3,019,792	-		GFF2957	0.21	-0.9
3,019,792	-		GFF2957	0.21	+0.3
3,019,797	-		GFF2957	0.22	+1.0
3,019,797	-		GFF2957	0.22	-0.5
3,019,797	-		GFF2957	0.22	+0.8
3,019,802	-		GFF2957	0.23	-0.0
3,019,822	-		GFF2957	0.28	+0.6
3,019,831	+		GFF2957	0.29	-1.5
3,019,832	-		GFF2957	0.30	-0.2
3,019,839	-		GFF2957	0.31	-1.9
3,019,850	+		GFF2957	0.33	+0.3
3,019,855	+		GFF2957	0.34	-0.8
3,019,862	+		GFF2957	0.36	-1.4
3,019,863	-		GFF2957	0.36	-2.5
3,019,865	-		GFF2957	0.36	-2.3
3,019,866	+		GFF2957	0.37	-0.2
3,019,879	-		GFF2957	0.39	+0.1
3,019,919	+		GFF2957	0.48	-1.5
3,019,919	+		GFF2957	0.48	+0.7
3,019,927	-		GFF2957	0.49	+1.3
3,019,927	-		GFF2957	0.49	+0.4
3,019,927	-		GFF2957	0.49	-0.0
3,019,982	-		GFF2957	0.61	-1.5
3,019,987	-		GFF2957	0.62	-0.4
3,019,989	+		GFF2957	0.62	+0.3
3,019,992	-		GFF2957	0.63	+0.5
3,019,997	-		GFF2957	0.64	+0.2
3,019,997	-		GFF2957	0.64	-0.5
3,019,997	-		GFF2957	0.64	-2.3
3,020,014	-		GFF2957	0.68	+0.5
3,020,014	-		GFF2957	0.68	-0.4
3,020,016	-		GFF2957	0.68	-1.4
3,020,018	+		GFF2957	0.68	-2.0
3,020,031	+		GFF2957	0.71	-2.0
3,020,031	+		GFF2957	0.71	+0.3
3,020,031	+		GFF2957	0.71	-0.3
3,020,031	+		GFF2957	0.71	-0.2
3,020,031	+		GFF2957	0.71	-0.3
3,020,031	+		GFF2957	0.71	-0.7
3,020,031	+		GFF2957	0.71	-1.1
3,020,031	+		GFF2957	0.71	-0.1
3,020,031	+		GFF2957	0.71	+0.8
3,020,031	+		GFF2957	0.71	+0.0
3,020,032	+		GFF2957	0.71	+0.3
3,020,032	+		GFF2957	0.71	-0.8
3,020,038	+		GFF2957	0.72	-0.4
3,020,039	-		GFF2957	0.73	-1.1
3,020,039	-		GFF2957	0.73	+1.1
3,020,039	-		GFF2957	0.73	-2.0
3,020,039	-		GFF2957	0.73	+1.0
3,020,039	-		GFF2957	0.73	+0.1
3,020,039	-		GFF2957	0.73	-0.8
3,020,039	-		GFF2957	0.73	-0.8
3,020,039	-		GFF2957	0.73	+1.0
3,020,039	-		GFF2957	0.73	-0.7
3,020,039	-		GFF2957	0.73	-0.2
3,020,039	-		GFF2957	0.73	-2.6
3,020,039	-		GFF2957	0.73	-0.2
3,020,039	-		GFF2957	0.73	-0.7
3,020,039	-		GFF2957	0.73	-0.5
3,020,039	-		GFF2957	0.73	+0.8
3,020,039	-		GFF2957	0.73	+0.8
3,020,039	-		GFF2957	0.73	+0.4
3,020,039	-		GFF2957	0.73	-0.8
3,020,039	-		GFF2957	0.73	-0.3
3,020,039	-		GFF2957	0.73	-0.5
3,020,039	-		GFF2957	0.73	-0.4
3,020,044	+		GFF2957	0.74	-0.4
3,020,051	-		GFF2957	0.75	-0.7
3,020,052	-		GFF2957	0.75	-0.7
3,020,064	+		GFF2957	0.78	-0.4
3,020,067	-		GFF2957	0.79	-1.3
3,020,084	+		GFF2957	0.82	-0.0
3,020,086	+		GFF2957	0.82	-0.7
3,020,099	-		GFF2957	0.85	+0.4
3,020,114	-		GFF2957	0.88	-0.9
3,020,165	+				-0.9
3,020,165	+				+1.2
3,020,173	-				-1.0
3,020,175	+				-3.0
3,020,178	+				-0.7
3,020,178	-				+0.9
3,020,183	-				-0.2
3,020,210	+				+0.5
3,020,218	-				-0.3
3,020,232	+				+0.6
3,020,232	+				-0.5
3,020,232	+				-0.2
3,020,240	-				-0.0
3,020,240	-				+0.6
3,020,240	-				-1.6
3,020,242	+				+0.7
3,020,282	+				-0.7
3,020,282	-				+0.3
3,020,287	+				-0.4
3,020,293	-				-0.7
3,020,303	+				-0.2
3,020,303	+				+1.3
3,020,311	-				+0.3
3,020,347	+				-0.8
3,020,347	+				-2.3
3,020,390	-		GFF2958	0.15	-1.7
3,020,445	+		GFF2958	0.38	-0.1
3,020,445	+		GFF2958	0.38	+1.1
3,020,445	+		GFF2958	0.38	-0.6
3,020,453	-		GFF2958	0.41	-0.8
3,020,453	-		GFF2958	0.41	-1.0
3,020,453	-		GFF2958	0.41	-0.2
3,020,499	-		GFF2958	0.60	-0.4
3,020,507	+		GFF2958	0.63	+1.1
3,020,507	+		GFF2958	0.63	+1.2
3,020,509	+		GFF2958	0.64	+0.3
3,020,512	+		GFF2958	0.65	+1.0
3,020,515	-		GFF2958	0.67	-0.6
3,020,515	-		GFF2958	0.67	+0.4
3,020,515	-		GFF2958	0.67	+1.1
3,020,517	+		GFF2958	0.67	-1.2
3,020,525	-		GFF2958	0.71	+0.7
3,020,530	-		GFF2958	0.73	+0.3
3,020,565	+		GFF2958	0.87	-0.6
3,020,578	-				-0.4
3,020,583	+				-1.4
3,020,583	+				-0.3
3,020,609	+				+0.6
3,020,615	+				-0.4
3,020,626	+		GFF2959	0.13	+0.7
3,020,642	-		GFF2959	0.19	-1.5
3,020,676	-		GFF2959	0.33	-0.5
3,020,677	-		GFF2959	0.34	+0.4
3,020,683	-		GFF2959	0.36	+0.5
3,020,697	-		GFF2959	0.42	+0.4
3,020,702	-		GFF2959	0.44	-0.1
3,020,702	-		GFF2959	0.44	-0.6
3,020,712	-		GFF2959	0.48	-0.7
3,020,732	-		GFF2959	0.56	-1.3
3,020,732	-		GFF2959	0.56	-1.0
3,020,737	-		GFF2959	0.58	+0.2
3,020,747	+		GFF2959	0.63	+1.1
3,020,770	+		GFF2959	0.72	+0.7
3,020,770	+		GFF2959	0.72	-0.8
3,020,778	-		GFF2959	0.75	+0.0
3,020,841	+				-1.8
3,020,849	-				+0.2
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3,020,893	+		GFF2960	0.29	-1.3
3,020,933	+		GFF2960	0.49	-0.5
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3,020,951	-		GFF2960	0.58	-0.3
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3,021,017	+				+1.0
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3,021,036	+				+0.5
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3,021,049	+				+1.5
3,021,057	+				+0.3
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3,021,064	-				+0.1
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