Strain Fitness in Sphingobium sp. HT1-2 around GFF2938

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,008,590	-				+0.1
3,008,590	-				+0.9
3,008,590	-				-2.2
3,008,590	-				-0.5
3,008,590	-				-0.5
3,008,598	-				-1.5
3,008,603	+				+0.5
3,008,603	+				-0.3
3,008,603	+				+0.6
3,008,603	+				+0.3
3,008,603	+				-0.2
3,008,603	+				-0.9
3,008,605	+				+0.4
3,008,611	-				-1.8
3,008,611	-				+0.1
3,008,611	-				-1.5
3,008,613	+				+0.3
3,008,618	+				-2.2
3,008,618	+				+1.3
3,008,671	-		GFF2936	0.19	-1.5
3,008,693	+		GFF2936	0.25	-1.2
3,008,693	+		GFF2936	0.25	-0.8
3,008,693	+		GFF2936	0.25	-1.0
3,008,693	+		GFF2936	0.25	-1.2
3,008,693	+		GFF2936	0.25	-0.7
3,008,693	+		GFF2936	0.25	+0.7
3,008,693	+		GFF2936	0.25	-0.6
3,008,693	+		GFF2936	0.25	-1.0
3,008,696	-		GFF2936	0.26	-0.9
3,008,701	-		GFF2936	0.28	-0.0
3,008,701	-		GFF2936	0.28	+1.6
3,008,701	-		GFF2936	0.28	+0.0
3,008,701	-		GFF2936	0.28	-0.5
3,008,701	-		GFF2936	0.28	+0.0
3,008,701	-		GFF2936	0.28	+0.3
3,008,701	-		GFF2936	0.28	+0.1
3,008,701	-		GFF2936	0.28	+1.4
3,008,701	-		GFF2936	0.28	-0.7
3,008,708	+		GFF2936	0.29	+1.3
3,008,708	+		GFF2936	0.29	+1.1
3,008,716	-		GFF2936	0.32	-1.4
3,008,716	-		GFF2936	0.32	-1.2
3,008,716	-		GFF2936	0.32	+0.3
3,008,716	-		GFF2936	0.32	+1.2
3,008,716	-		GFF2936	0.32	+1.2
3,008,723	-		GFF2936	0.34	+0.0
3,008,723	-		GFF2936	0.34	-1.2
3,008,748	-		GFF2936	0.41	+1.1
3,008,748	-		GFF2936	0.41	-0.2
3,008,748	-		GFF2936	0.41	-1.2
3,008,748	-		GFF2936	0.41	+0.3
3,008,754	+		GFF2936	0.42	-1.0
3,008,773	+		GFF2936	0.47	+0.4
3,008,773	+		GFF2936	0.47	+0.3
3,008,806	+		GFF2936	0.57	+0.1
3,008,813	-		GFF2936	0.59	-0.0
3,008,827	+		GFF2936	0.62	-0.4
3,008,852	-		GFF2936	0.69	+1.8
3,008,862	+		GFF2936	0.72	+0.1
3,008,909	+		GFF2936	0.85	+0.9
3,008,909	+		GFF2936	0.85	+1.0
3,008,914	+		GFF2936	0.87	+0.4
3,008,914	+		GFF2936	0.87	-0.6
3,008,914	+		GFF2936	0.87	+0.3
3,008,914	+		GFF2936	0.87	-0.8
3,008,917	-		GFF2936	0.88	+0.6
3,008,917	-		GFF2936	0.88	+0.3
3,008,917	-		GFF2936	0.88	-0.4
3,008,919	+		GFF2936	0.88	+0.0
3,008,919	+		GFF2936	0.88	+0.6
3,008,922	-		GFF2936	0.89	+0.9
3,008,922	-		GFF2936	0.89	-0.6
3,008,922	-		GFF2936	0.89	-0.2
3,008,922	-		GFF2936	0.89	-0.9
3,008,927	-				-0.4
3,008,927	-				+0.2
3,008,941	-				-1.7
3,008,952	+				+1.4
3,008,952	+				-0.4
3,008,952	+				-1.2
3,008,952	+				-1.0
3,008,952	+				+0.1
3,008,952	+				+0.6
3,008,952	+				+0.3
3,008,952	+				-1.4
3,008,960	-				-0.8
3,008,960	-				-0.6
3,008,960	-				-0.2
3,008,960	-				+0.1
3,008,960	-				+0.8
3,008,960	-				-1.2
3,008,963	+				+1.3
3,008,965	-				+0.3
3,008,974	+				-0.8
3,008,979	+				-0.3
3,008,982	+				-1.1
3,009,039	+		GFF2937	0.14	-2.2
3,009,042	-		GFF2937	0.14	-0.0
3,009,043	-		GFF2937	0.14	+0.2
3,009,072	+		GFF2937	0.19	+0.2
3,009,078	+		GFF2937	0.20	-1.1
3,009,078	+		GFF2937	0.20	+0.3
3,009,086	-		GFF2937	0.21	+0.4
3,009,086	-		GFF2937	0.21	-1.0
3,009,091	+		GFF2937	0.22	-0.4
3,009,101	-		GFF2937	0.24	-1.2
3,009,148	-		GFF2937	0.31	-2.4
3,009,148	-		GFF2937	0.31	+0.6
3,009,149	+		GFF2937	0.31	-1.2
3,009,150	+		GFF2937	0.32	+0.4
3,009,156	+		GFF2937	0.33	+0.4
3,009,156	+		GFF2937	0.33	-0.1
3,009,158	-		GFF2937	0.33	-1.8
3,009,158	-		GFF2937	0.33	+0.3
3,009,159	-		GFF2937	0.33	-1.2
3,009,161	+		GFF2937	0.33	-2.0
3,009,164	-		GFF2937	0.34	+0.1
3,009,164	-		GFF2937	0.34	+0.1
3,009,223	-		GFF2937	0.43	-2.0
3,009,223	-		GFF2937	0.43	+1.5
3,009,225	+		GFF2937	0.44	-1.8
3,009,245	+		GFF2937	0.47	-0.9
3,009,254	+		GFF2937	0.48	+0.2
3,009,254	+		GFF2937	0.48	-0.9
3,009,254	+		GFF2937	0.48	-0.0
3,009,254	+		GFF2937	0.48	-0.7
3,009,256	+		GFF2937	0.49	+0.3
3,009,262	-		GFF2937	0.50	-0.8
3,009,262	-		GFF2937	0.50	-2.5
3,009,262	-		GFF2937	0.50	-0.4
3,009,262	-		GFF2937	0.50	+1.1
3,009,262	-		GFF2937	0.50	-1.7
3,009,282	+		GFF2937	0.53	+0.4
3,009,287	-		GFF2937	0.54	+0.2
3,009,304	+		GFF2937	0.56	+0.9
3,009,312	-		GFF2937	0.58	+0.3
3,009,313	-		GFF2937	0.58	-1.5
3,009,315	+		GFF2937	0.58	+1.0
3,009,327	-		GFF2937	0.60	+0.7
3,009,330	+		GFF2937	0.61	-2.4
3,009,330	+		GFF2937	0.61	-0.8
3,009,330	+		GFF2937	0.61	+1.5
3,009,330	+		GFF2937	0.61	+0.5
3,009,335	+		GFF2937	0.61	-1.7
3,009,338	-		GFF2937	0.62	+1.0
3,009,338	-		GFF2937	0.62	-1.1
3,009,338	-		GFF2937	0.62	+1.4
3,009,338	-		GFF2937	0.62	+0.6
3,009,338	-		GFF2937	0.62	+0.1
3,009,340	+		GFF2937	0.62	+0.1
3,009,340	+		GFF2937	0.62	+0.1
3,009,340	+		GFF2937	0.62	-2.3
3,009,343	-		GFF2937	0.63	+1.2
3,009,352	-		GFF2937	0.64	-0.2
3,009,358	+		GFF2937	0.65	-0.0
3,009,361	-		GFF2937	0.66	-1.2
3,009,369	+		GFF2937	0.67	-1.9
3,009,392	-		GFF2937	0.71	-0.7
3,009,413	-		GFF2937	0.74	+0.3
3,009,415	+		GFF2937	0.74	+0.4
3,009,423	-		GFF2937	0.76	+0.5
3,009,423	-		GFF2937	0.76	-2.8
3,009,423	-		GFF2937	0.76	-0.1
3,009,424	-		GFF2937	0.76	-0.0
3,009,438	+		GFF2937	0.78	+0.1
3,009,467	-		GFF2937	0.83	-1.0
3,009,474	-		GFF2937	0.84	-0.7
3,009,562	+				-0.7
3,009,575	-				-1.5
3,009,575	-				+1.1
3,009,576	+				+0.3
3,009,576	+				-2.2
3,009,593	+				+0.7
3,009,713	+		GFF2938	0.25	-0.8
3,009,713	+		GFF2938	0.25	-0.0
3,009,713	+		GFF2938	0.25	+0.1
3,009,721	-		GFF2938	0.26	+0.2
3,009,747	+		GFF2938	0.31	+0.0
3,009,749	+		GFF2938	0.31	+0.4
3,009,757	-		GFF2938	0.32	+0.9
3,009,762	-		GFF2938	0.33	+0.3
3,009,768	-		GFF2938	0.34	+0.2
3,009,770	+		GFF2938	0.35	-0.8
3,009,770	+		GFF2938	0.35	-1.4
3,009,776	+		GFF2938	0.36	-1.1
3,009,778	-		GFF2938	0.36	-3.2
3,009,778	-		GFF2938	0.36	-1.7
3,009,790	-		GFF2938	0.38	+0.8
3,009,833	+		GFF2938	0.45	-0.4
3,009,833	+		GFF2938	0.45	-0.4
3,009,833	+		GFF2938	0.45	+0.7
3,009,841	-		GFF2938	0.46	+0.2
3,009,850	-		GFF2938	0.48	-0.5
3,009,857	+		GFF2938	0.49	+0.1
3,009,857	+		GFF2938	0.49	+0.3
3,009,857	+		GFF2938	0.49	+1.4
3,009,858	-		GFF2938	0.49	-0.7
3,009,860	-		GFF2938	0.50	+0.5
3,009,860	-		GFF2938	0.50	+0.2
3,009,865	-		GFF2938	0.50	+1.6
3,009,909	+		GFF2938	0.58	+0.5
3,009,917	-		GFF2938	0.59	-0.2
3,009,929	+		GFF2938	0.61	-2.0
3,009,960	-		GFF2938	0.66	+0.1
3,009,985	+		GFF2938	0.71	-0.3
3,009,994	+		GFF2938	0.72	+0.3
3,010,032	-		GFF2938	0.78	+0.2
3,010,069	+		GFF2938	0.85	-2.0
3,010,077	-		GFF2938	0.86	-0.2
3,010,100	+		GFF2938	0.90	-0.1
3,010,110	+				+0.9
3,010,115	-				-1.5
3,010,131	+				-1.4
3,010,131	+				-0.1
3,010,150	+				-1.2
3,010,150	+				-0.1
3,010,295	+				-2.0
3,010,301	+				+0.3
3,010,301	+				+0.2
3,010,303	-				+0.4
3,010,306	+				-0.5
3,010,317	-				-2.0
3,010,341	+				-2.0
3,010,341	+				+0.1
3,010,342	-				+0.3
3,010,346	+				+0.4
3,010,349	-				+2.6
3,010,354	-				-0.4
3,010,354	-				-0.7
3,010,354	-				+0.8
3,010,356	+				-0.4
3,010,359	+				-0.5
3,010,359	-				-1.7
3,010,364	-				-1.1
3,010,379	-				+0.6
3,010,404	+		GFF2939	0.26	+0.1
3,010,404	+		GFF2939	0.26	+1.1
3,010,404	+		GFF2939	0.26	-0.4
3,010,412	-		GFF2939	0.32	-1.2
3,010,460	+		GFF2939	0.74	-1.1
3,010,460	+		GFF2939	0.74	-0.5
3,010,468	-		GFF2939	0.80	-2.4
3,010,468	-		GFF2939	0.80	-0.2
3,010,468	-		GFF2939	0.80	-0.2
3,010,468	-		GFF2939	0.80	-1.2
3,010,468	-		GFF2939	0.80	-1.9
3,010,468	-		GFF2939	0.80	-1.2
3,010,468	-		GFF2939	0.80	+0.2
3,010,471	+		GFF2939	0.83	-0.1
3,010,483	+				-0.3
3,010,484	+				-0.0
3,010,484	+				+0.5
3,010,484	+				+0.1
3,010,484	+				-0.9
3,010,484	+				-0.8
3,010,484	+				+0.6
3,010,484	+				+0.6
3,010,484	+				+0.8
3,010,484	+				-1.5
3,010,484	+				+0.2
3,010,484	+				-1.1
3,010,484	+				+0.4
3,010,484	+				-0.4
3,010,484	+				-1.4
3,010,484	+				+0.7
3,010,484	+				-2.4
3,010,484	+				-1.2
3,010,484	+				-1.6
3,010,484	+				-0.0
3,010,484	+				-0.1
3,010,484	+				-0.7
3,010,484	+				+0.3
3,010,484	+				-0.6
3,010,484	+				+0.3
3,010,484	+				+0.4
3,010,484	+				-0.8
3,010,484	+				+1.4
3,010,484	+				+1.0
3,010,484	+				+0.6
3,010,484	+				+0.0
3,010,484	+				-1.2
3,010,484	+				-0.4
3,010,484	+				-0.4
3,010,484	+				-1.3
3,010,492	-				-0.7
3,010,492	-				+0.4
3,010,492	-				+0.2
3,010,492	-				-1.4
3,010,492	-				+0.3
3,010,492	-				-0.6
3,010,492	-				+0.1
3,010,492	-				-1.9
3,010,492	-				-2.0
3,010,492	-				+0.3
3,010,492	-				-0.6
3,010,492	-				+0.1
3,010,492	-				-0.6
3,010,492	-				+0.5
3,010,492	-				-1.0
3,010,492	-				-0.5
3,010,492	-				-1.3
3,010,492	-				-0.3
3,010,492	-				+0.2
3,010,492	-				-0.5
3,010,492	-				+0.0
3,010,492	-				+0.1
3,010,492	-				-0.0
3,010,492	-				+0.4
3,010,492	-				+1.6
3,010,492	-				+0.6
3,010,492	-				+0.6
3,010,492	-				+0.9
3,010,492	-				-1.6
3,010,492	-				-1.6
3,010,492	-				+0.9
3,010,492	-				+0.2
3,010,492	-				+0.1
3,010,492	-				-0.3
3,010,492	-				+0.3
3,010,492	-				-2.0
3,010,492	-				-1.2
3,010,494	+				+0.8
3,010,494	+				-0.2
3,010,502	-				-2.0
3,010,502	-				-0.7
3,010,516	-				-1.2
3,010,526	-				-0.3
3,010,526	-				-1.0
3,010,539	+				-1.0
3,010,545	+				-1.0
3,010,553	-				-1.7
3,010,561	-				+0.3
3,010,561	-				-1.0
3,010,586	+				+0.8
3,010,594	-				-0.2
3,010,624	-				-1.2
3,010,660	-				-0.4
3,010,667	+				-0.8
3,010,667	+				+0.9
3,010,731	+				+1.1
3,010,734	-				+1.0
3,010,740	-				-0.7
3,010,740	-				-0.6
3,010,753	-				-0.4
3,010,766	-				+0.5
3,010,767	+				+1.5
3,010,811	+				+1.8
3,010,819	-		GFF2940	0.11	-2.2
3,010,827	+		GFF2940	0.16	+0.4
3,010,833	+		GFF2940	0.19	-1.6
3,010,833	+		GFF2940	0.19	-0.8
3,010,841	+		GFF2940	0.23	-1.5
3,010,841	-		GFF2940	0.23	-1.5
3,010,841	-		GFF2940	0.23	-1.2
3,010,841	-		GFF2940	0.23	+1.6
3,010,842	+		GFF2940	0.24	+1.5
3,010,863	+		GFF2940	0.36	-1.3
3,010,875	-		GFF2940	0.42	+0.8
3,010,900	-		GFF2940	0.56	-0.7
3,010,928	+		GFF2940	0.72	+0.2
3,010,928	+		GFF2940	0.72	+0.1
3,010,928	+		GFF2940	0.72	-0.2
3,010,928	+		GFF2940	0.72	-0.6
3,010,933	+		GFF2940	0.74	-1.2
3,010,936	-		GFF2940	0.76	+1.1
3,010,950	+		GFF2940	0.84	-0.5
3,010,950	+		GFF2940	0.84	+0.8
3,010,950	+		GFF2940	0.84	-1.4
3,010,950	+		GFF2940	0.84	+0.1
3,010,950	+		GFF2940	0.84	-1.1
3,010,950	+		GFF2940	0.84	-0.1
3,010,950	+		GFF2940	0.84	-0.7
3,010,950	+		GFF2940	0.84	-0.0
3,010,958	-		GFF2940	0.88	+0.3
3,010,958	-		GFF2940	0.88	-0.8
3,010,958	-		GFF2940	0.88	-0.8
3,010,958	-		GFF2940	0.88	-0.6
3,010,958	-		GFF2940	0.88	+1.1
3,010,958	-		GFF2940	0.88	+0.6
3,010,958	-		GFF2940	0.88	+0.2
3,010,958	-		GFF2940	0.88	+1.2
3,010,958	-		GFF2940	0.88	+1.6
3,010,960	+		GFF2940	0.89	+0.1
3,010,960	+		GFF2940	0.89	+0.8
3,010,960	+		GFF2940	0.89	-1.3
3,010,960	+		GFF2940	0.89	+0.9
3,010,960	+		GFF2940	0.89	+0.7
3,010,960	+		GFF2940	0.89	+1.1
3,010,960	+		GFF2940	0.89	-1.4
3,010,960	+		GFF2940	0.89	-2.6
3,010,960	+		GFF2940	0.89	+0.1
3,010,960	+		GFF2940	0.89	+0.3
3,010,960	+		GFF2940	0.89	+0.2
3,010,960	+		GFF2940	0.89	-2.1
3,010,968	-				+0.9
3,010,968	-				+0.1
3,010,968	-				+0.7
3,010,968	-				-1.1
3,010,968	-				-1.8
3,010,968	-				-1.3
3,010,968	-				-1.6
3,010,968	-				+0.4
3,010,968	-				+0.1
3,010,968	-				-1.0
3,010,968	-				-0.0
3,010,968	-				-0.5
3,010,968	-				-0.6
3,010,968	-				-0.2
3,010,968	-				+0.8
3,010,968	-				+0.2
3,010,968	-				+0.3
3,010,968	-				-1.2
3,010,968	-				+0.3
3,010,968	-				+0.4
3,010,968	-				-2.9
3,010,968	-				-1.4
3,010,968	-				-0.4
3,010,968	-				+1.5
3,010,968	-				+0.2
3,010,968	-				-1.5
3,010,968	-				-0.4
3,010,970	+				+0.1
3,010,983	-				+1.6
3,010,985	+				-0.4
3,010,985	+				-0.6
3,010,998	-				-0.4
3,011,024	-		GFF2941	0.20	-0.4
3,011,052	+		GFF2941	0.32	-0.5
3,011,060	-		GFF2941	0.35	-0.2
3,011,064	+		GFF2941	0.37	-2.0
3,011,064	+		GFF2941	0.37	+1.0
3,011,064	+		GFF2941	0.37	+0.3
3,011,067	-		GFF2941	0.38	-0.2
3,011,072	-		GFF2941	0.40	-0.4
3,011,072	-		GFF2941	0.40	-0.7
3,011,096	+		GFF2941	0.50	+0.9
3,011,105	+		GFF2941	0.54	+0.3
3,011,118	-		GFF2941	0.60	-1.8
3,011,118	-		GFF2941	0.60	-2.0
3,011,118	-		GFF2941	0.60	+0.6
3,011,137	+		GFF2941	0.68	+0.0
3,011,144	+		GFF2941	0.71	+0.5
3,011,144	+		GFF2941	0.71	-0.7
3,011,149	+		GFF2941	0.73	+0.3
3,011,149	+		GFF2941	0.73	-1.0
3,011,149	+		GFF2941	0.73	+1.2
3,011,152	-		GFF2941	0.74	+0.2
3,011,152	-		GFF2941	0.74	-1.1
3,011,154	+		GFF2941	0.75	+0.2
3,011,154	+		GFF2941	0.75	+1.3
3,011,157	-		GFF2941	0.76	+0.5