Strain Fitness in Sphingobium sp. HT1-2 around GFF2923

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,994,163	-		GFF2922	0.64	+1.1
2,994,218	+		GFF2922	0.66	+0.2
2,994,227	-		GFF2922	0.67	+0.2
2,994,239	-		GFF2922	0.67	-1.9
2,994,348	+		GFF2922	0.71	-2.1
2,994,366	-		GFF2922	0.72	-0.1
2,994,388	+		GFF2922	0.73	+1.6
2,994,393	+		GFF2922	0.73	-1.2
2,994,402	+		GFF2922	0.73	+0.4
2,994,402	+		GFF2922	0.73	-0.0
2,994,402	+		GFF2922	0.73	-1.2
2,994,415	+		GFF2922	0.74	+1.3
2,994,431	-		GFF2922	0.74	+1.6
2,994,435	+		GFF2922	0.74	-1.5
2,994,461	+		GFF2922	0.75	-0.2
2,994,466	+		GFF2922	0.75	-0.3
2,994,466	+		GFF2922	0.75	+0.7
2,994,466	+		GFF2922	0.75	-2.0
2,994,466	+		GFF2922	0.75	-1.1
2,994,466	+		GFF2922	0.75	-0.1
2,994,469	-		GFF2922	0.75	-0.7
2,994,474	-		GFF2922	0.76	-0.4
2,994,474	-		GFF2922	0.76	-1.1
2,994,474	-		GFF2922	0.76	-1.1
2,994,474	-		GFF2922	0.76	+0.7
2,994,474	-		GFF2922	0.76	+0.8
2,994,474	-		GFF2922	0.76	+1.1
2,994,474	-		GFF2922	0.76	-2.2
2,994,476	+		GFF2922	0.76	-0.8
2,994,476	+		GFF2922	0.76	+0.8
2,994,476	+		GFF2922	0.76	+0.6
2,994,481	+		GFF2922	0.76	-0.3
2,994,481	+		GFF2922	0.76	-0.1
2,994,484	-		GFF2922	0.76	-0.0
2,994,484	-		GFF2922	0.76	+0.2
2,994,484	-		GFF2922	0.76	-0.2
2,994,486	+		GFF2922	0.76	-0.2
2,994,489	-		GFF2922	0.76	+0.7
2,994,489	-		GFF2922	0.76	-2.2
2,994,489	-		GFF2922	0.76	+0.0
2,994,489	-		GFF2922	0.76	+0.9
2,994,491	+		GFF2922	0.76	-0.7
2,994,532	+		GFF2922	0.78	-0.2
2,994,553	+		GFF2922	0.79	-0.2
2,994,553	-		GFF2922	0.79	+1.0
2,994,564	+		GFF2922	0.79	+1.2
2,994,565	+		GFF2922	0.79	-1.7
2,994,574	+		GFF2922	0.79	-0.2
2,994,582	-		GFF2922	0.80	+0.3
2,994,582	-		GFF2922	0.80	+0.1
2,994,582	-		GFF2922	0.80	-0.8
2,994,605	-		GFF2922	0.80	+0.8
2,994,605	-		GFF2922	0.80	-0.3
2,994,626	+		GFF2922	0.81	-0.7
2,994,626	+		GFF2922	0.81	+0.8
2,994,626	+		GFF2922	0.81	+1.1
2,994,626	+		GFF2922	0.81	-1.3
2,994,626	+		GFF2922	0.81	-0.4
2,994,626	+		GFF2922	0.81	+0.5
2,994,634	-		GFF2922	0.81	-0.5
2,994,634	-		GFF2922	0.81	+0.6
2,994,634	-		GFF2922	0.81	-1.0
2,994,634	-		GFF2922	0.81	-0.3
2,994,634	-		GFF2922	0.81	-1.5
2,994,669	-		GFF2922	0.83	-1.8
2,994,669	-		GFF2922	0.83	-0.0
2,994,674	+		GFF2922	0.83	-0.6
2,994,682	-		GFF2922	0.83	+0.2
2,994,771	+		GFF2922	0.86	-0.7
2,994,779	+		GFF2922	0.87	+0.9
2,994,779	-		GFF2922	0.87	-0.1
2,994,811	+		GFF2922	0.88	-0.1
2,994,816	+		GFF2922	0.88	-0.9
2,994,816	+		GFF2922	0.88	-1.3
2,994,816	+		GFF2922	0.88	-0.2
2,994,816	+		GFF2922	0.88	+0.6
2,994,816	+		GFF2922	0.88	+0.9
2,994,816	+		GFF2922	0.88	+0.0
2,994,816	+		GFF2922	0.88	-1.2
2,994,816	+		GFF2922	0.88	+0.5
2,994,816	+		GFF2922	0.88	+0.2
2,994,816	+		GFF2922	0.88	+1.3
2,994,816	+		GFF2922	0.88	-1.2
2,994,816	+		GFF2922	0.88	-0.8
2,994,816	+		GFF2922	0.88	+1.1
2,994,816	+		GFF2922	0.88	-1.0
2,994,816	+		GFF2922	0.88	+0.7
2,994,816	+		GFF2922	0.88	+1.0
2,994,816	+		GFF2922	0.88	+0.7
2,994,816	+		GFF2922	0.88	+1.0
2,994,816	+		GFF2922	0.88	+0.3
2,994,817	+		GFF2922	0.88	+0.3
2,994,824	-		GFF2922	0.88	+0.0
2,994,824	-		GFF2922	0.88	+0.6
2,994,824	-		GFF2922	0.88	+0.3
2,994,824	-		GFF2922	0.88	+0.3
2,994,824	-		GFF2922	0.88	-0.1
2,994,824	-		GFF2922	0.88	-0.6
2,994,824	-		GFF2922	0.88	+0.7
2,994,824	-		GFF2922	0.88	-0.5
2,994,824	-		GFF2922	0.88	-0.4
2,994,824	-		GFF2922	0.88	-1.3
2,994,824	-		GFF2922	0.88	+0.2
2,994,824	-		GFF2922	0.88	-0.6
2,994,824	-		GFF2922	0.88	+0.6
2,994,824	-		GFF2922	0.88	-0.5
2,994,824	-		GFF2922	0.88	-0.1
2,994,824	-		GFF2922	0.88	-0.4
2,994,824	-		GFF2922	0.88	-1.9
2,994,824	-		GFF2922	0.88	+0.3
2,994,824	-		GFF2922	0.88	+0.2
2,994,824	-		GFF2922	0.88	+1.0
2,994,824	-		GFF2922	0.88	-1.0
2,994,824	-		GFF2922	0.88	+0.8
2,994,824	-		GFF2922	0.88	-0.2
2,994,824	-		GFF2922	0.88	-1.2
2,994,824	-		GFF2922	0.88	-1.9
2,994,824	-		GFF2922	0.88	+0.2
2,994,825	-		GFF2922	0.88	+0.3
2,994,825	-		GFF2922	0.88	-0.6
2,994,825	-		GFF2922	0.88	-0.7
2,994,849	-		GFF2922	0.89	+0.8
2,994,851	+		GFF2922	0.89	-0.7
2,994,856	+		GFF2922	0.89	+0.9
2,994,860	+		GFF2922	0.90	-1.2
2,994,888	-				-1.6
2,994,889	-				-0.7
2,994,897	+				+0.4
2,994,897	+				-1.4
2,994,905	-				-0.9
2,994,905	-				-0.9
2,994,910	+				-2.4
2,994,921	+				-0.0
2,994,932	+				-0.3
2,994,947	+				+0.3
2,994,947	+				+1.1
2,994,947	+				-0.6
2,994,955	-				-1.2
2,994,955	-				-0.4
2,994,955	-				-1.1
2,994,957	+				+0.9
2,994,957	+				-1.4
2,994,957	+				+0.8
2,994,957	+				-0.1
2,994,958	+				-0.1
2,994,958	+				+0.0
2,994,958	+				-1.8
2,994,965	-				+1.1
2,994,965	-				-1.0
2,994,965	-				+0.6
2,994,967	+				-0.7
2,994,977	+				-0.3
2,994,980	+				+0.5
2,994,980	-				+1.5
2,994,980	-				+1.6
2,994,983	-				+0.8
2,994,983	-				-0.3
2,994,983	-				+0.2
2,994,983	-				-0.2
2,994,983	-				+0.9
2,994,988	-				-2.9
2,994,990	+				+0.3
2,994,990	+				-0.0
2,994,998	+				-0.8
2,994,998	-				+0.1
2,994,998	-				-0.1
2,994,998	-				+0.9
2,995,006	-				-0.1
2,995,024	+				+0.4
2,995,030	+				+0.8
2,995,030	+				+0.4
2,995,035	+				-0.3
2,995,035	+				+0.0
2,995,035	+				+0.7
2,995,035	+				+0.0
2,995,035	+				+1.6
2,995,035	+				+0.2
2,995,035	+				+0.9
2,995,035	+				-1.1
2,995,035	+				-2.7
2,995,035	+				-0.4
2,995,038	-				-1.6
2,995,038	-				-0.2
2,995,043	-				-2.2
2,995,043	-				+0.9
2,995,043	-				+0.5
2,995,043	-				-0.1
2,995,043	-				+1.7
2,995,043	-				-0.1
2,995,043	-				+0.2
2,995,043	-				-0.7
2,995,043	-				+0.2
2,995,043	-				-0.7
2,995,053	+				-1.6
2,995,066	+				-0.6
2,995,074	-				-0.1
2,995,087	+				-0.3
2,995,123	+				-0.2
2,995,131	-				-0.7
2,995,131	-				+1.8
2,995,133	+				+1.3
2,995,133	+				-0.7
2,995,133	+				-0.7
2,995,136	-				-2.5
2,995,136	-				+0.8
2,995,136	-				-0.5
2,995,141	-				+0.3
2,995,141	-				+0.6
2,995,141	-				-0.3
2,995,141	-				-0.2
2,995,147	+				-0.1
2,995,147	+				-1.5
2,995,152	+				-0.0
2,995,155	-				-0.2
2,995,162	+				-0.2
2,995,175	-				-0.6
2,995,175	-				-0.8
2,995,183	-				+0.3
2,995,188	+				-1.2
2,995,195	+				-0.2
2,995,203	-				-0.9
2,995,210	+				+0.1
2,995,244	-				-0.4
2,995,262	+				+0.2
2,995,266	-				-0.3
2,995,273	+				+0.2
2,995,276	+				+0.5
2,995,288	-				-1.0
2,995,290	+				+0.4
2,995,292	+				-0.2
2,995,298	-				-1.0
2,995,300	-				-1.1
2,995,316	-				-2.7
2,995,362	-				+0.4
2,995,372	-				+0.4
2,995,398	+		GFF2923	0.11	-0.3
2,995,406	-		GFF2923	0.11	-0.1
2,995,421	+		GFF2923	0.12	+0.5
2,995,429	-		GFF2923	0.13	+0.9
2,995,438	+		GFF2923	0.13	+1.0
2,995,438	+		GFF2923	0.13	-1.4
2,995,440	-		GFF2923	0.13	-0.0
2,995,446	-		GFF2923	0.13	+1.0
2,995,446	-		GFF2923	0.13	-0.4
2,995,448	+		GFF2923	0.13	-1.1
2,995,456	-		GFF2923	0.14	+0.5
2,995,461	-		GFF2923	0.14	+2.0
2,995,462	-		GFF2923	0.14	+0.1
2,995,468	+		GFF2923	0.14	-0.4
2,995,500	-		GFF2923	0.16	+0.3
2,995,521	+		GFF2923	0.17	-0.5
2,995,529	-		GFF2923	0.17	+0.5
2,995,536	+		GFF2923	0.17	-1.2
2,995,572	+		GFF2923	0.19	-1.9
2,995,572	+		GFF2923	0.19	+1.3
2,995,572	+		GFF2923	0.19	-0.6
2,995,580	-		GFF2923	0.19	+0.5
2,995,598	+		GFF2923	0.20	-1.2
2,995,606	+		GFF2923	0.20	-0.8
2,995,619	+		GFF2923	0.21	+0.5
2,995,622	+		GFF2923	0.21	-0.2
2,995,627	-		GFF2923	0.21	-0.1
2,995,677	-		GFF2923	0.24	+0.0
2,995,701	+		GFF2923	0.25	-0.4
2,995,721	+		GFF2923	0.26	-0.4
2,995,731	+		GFF2923	0.26	+0.3
2,995,734	-		GFF2923	0.26	+1.0
2,995,739	-		GFF2923	0.26	-1.1
2,995,739	-		GFF2923	0.26	-0.0
2,995,748	+		GFF2923	0.27	+0.2
2,995,750	+		GFF2923	0.27	+0.9
2,995,750	+		GFF2923	0.27	-1.2
2,995,750	+		GFF2923	0.27	+0.2
2,995,750	+		GFF2923	0.27	-0.4
2,995,753	+		GFF2923	0.27	+0.2
2,995,758	+		GFF2923	0.27	-0.2
2,995,758	-		GFF2923	0.27	-1.7
2,995,758	-		GFF2923	0.27	+0.1
2,995,758	-		GFF2923	0.27	-1.3
2,995,758	-		GFF2923	0.27	-0.1
2,995,758	-		GFF2923	0.27	-1.4
2,995,761	-		GFF2923	0.27	-0.5
2,995,761	-		GFF2923	0.27	-1.5
2,995,766	-		GFF2923	0.28	-0.1
2,995,766	-		GFF2923	0.28	+0.2
2,995,789	+		GFF2923	0.29	+0.2
2,995,799	-		GFF2923	0.29	-0.0
2,995,801	+		GFF2923	0.29	-1.4
2,995,804	-		GFF2923	0.29	+0.0
2,995,804	-		GFF2923	0.29	-0.2
2,995,806	+		GFF2923	0.29	-1.5
2,995,811	+		GFF2923	0.30	-0.1
2,995,811	+		GFF2923	0.30	+0.8
2,995,819	-		GFF2923	0.30	-1.2
2,995,824	+		GFF2923	0.30	+0.2
2,995,824	-		GFF2923	0.30	-0.2
2,995,871	-		GFF2923	0.32	+1.1
2,995,876	-		GFF2923	0.32	+1.4
2,995,885	+		GFF2923	0.33	+0.7
2,995,898	-		GFF2923	0.33	-0.4
2,995,903	-		GFF2923	0.34	-0.7
2,995,908	-		GFF2923	0.34	+1.2
2,995,913	-		GFF2923	0.34	+0.2
2,995,950	-		GFF2923	0.36	-1.6
2,995,982	-		GFF2923	0.37	+0.7
2,995,982	-		GFF2923	0.37	-0.5
2,995,986	-		GFF2923	0.37	-2.3
2,995,987	-		GFF2923	0.37	-0.7
2,995,992	-		GFF2923	0.38	+1.6
2,995,992	-		GFF2923	0.38	-1.1
2,996,019	+		GFF2923	0.39	-0.7
2,996,038	-		GFF2923	0.40	-1.9
2,996,062	+		GFF2923	0.41	+0.2
2,996,070	-		GFF2923	0.41	+1.6
2,996,072	-		GFF2923	0.41	-0.4
2,996,074	+		GFF2923	0.41	-0.6
2,996,082	-		GFF2923	0.42	-2.0
2,996,082	-		GFF2923	0.42	-0.5
2,996,082	-		GFF2923	0.42	-2.1
2,996,092	+		GFF2923	0.42	+0.6
2,996,092	-		GFF2923	0.42	-0.2
2,996,092	-		GFF2923	0.42	-1.4
2,996,130	+		GFF2923	0.44	+0.7
2,996,143	+		GFF2923	0.44	-0.7
2,996,143	+		GFF2923	0.44	+0.0
2,996,143	+		GFF2923	0.44	-2.0
2,996,151	-		GFF2923	0.45	-1.2
2,996,151	-		GFF2923	0.45	+0.9
2,996,159	-		GFF2923	0.45	+0.6
2,996,159	-		GFF2923	0.45	-2.0
2,996,159	-		GFF2923	0.45	-0.4
2,996,170	+		GFF2923	0.46	+0.2
2,996,170	+		GFF2923	0.46	-1.7
2,996,178	-		GFF2923	0.46	-0.3
2,996,216	-		GFF2923	0.48	-1.5
2,996,241	+		GFF2923	0.49	-0.2
2,996,241	+		GFF2923	0.49	+0.2
2,996,247	+		GFF2923	0.49	-1.5
2,996,260	+		GFF2923	0.50	+1.5
2,996,275	+		GFF2923	0.50	+0.8
2,996,293	-		GFF2923	0.51	+0.6
2,996,304	+		GFF2923	0.52	-0.1
2,996,304	+		GFF2923	0.52	-0.1
2,996,308	-		GFF2923	0.52	-0.1
2,996,308	-		GFF2923	0.52	-2.8
2,996,310	+		GFF2923	0.52	-0.1
2,996,314	+		GFF2923	0.52	+0.0
2,996,314	+		GFF2923	0.52	-0.7
2,996,314	+		GFF2923	0.52	+0.7
2,996,314	+		GFF2923	0.52	-0.6
2,996,314	+		GFF2923	0.52	+0.8
2,996,314	+		GFF2923	0.52	-0.7
2,996,322	-		GFF2923	0.52	-3.1
2,996,329	+		GFF2923	0.53	+0.7
2,996,332	-		GFF2923	0.53	-1.1
2,996,332	-		GFF2923	0.53	+0.6
2,996,332	-		GFF2923	0.53	+0.1
2,996,332	-		GFF2923	0.53	+0.2
2,996,334	+		GFF2923	0.53	-1.5
2,996,337	-		GFF2923	0.53	-0.5
2,996,339	+		GFF2923	0.53	-2.0
2,996,344	+		GFF2923	0.53	-0.3
2,996,344	+		GFF2923	0.53	-0.3
2,996,344	+		GFF2923	0.53	-1.0
2,996,344	+		GFF2923	0.53	+0.1
2,996,354	+		GFF2923	0.54	+1.0
2,996,378	-		GFF2923	0.55	-0.1
2,996,379	+		GFF2923	0.55	-0.7
2,996,387	-		GFF2923	0.55	-1.2
2,996,396	-		GFF2923	0.56	-0.8
2,996,421	+		GFF2923	0.57	-2.2
2,996,426	+		GFF2923	0.57	-0.4
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2,997,249	-				-2.5
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2,997,294	-				-0.7
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2,997,408	-				-1.8
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