Strain Fitness in Sphingobium sp. HT1-2 around GFF2897

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,956,979	+		GFF2895	0.87	-1.2
2,956,980	+		GFF2895	0.87	+0.3
2,957,003	+		GFF2895	0.88	+0.4
2,957,003	+		GFF2895	0.88	+0.1
2,957,011	-		GFF2895	0.88	+0.0
2,957,011	-		GFF2895	0.88	+0.3
2,957,011	-		GFF2895	0.88	-0.1
2,957,019	-		GFF2895	0.89	+1.3
2,957,067	+				+0.5
2,957,106	+				-2.6
2,957,106	-				-0.5
2,957,111	+				+0.6
2,957,111	+				+0.2
2,957,119	-				-1.5
2,957,119	-				-1.8
2,957,138	-				+1.1
2,957,138	-				-1.0
2,957,153	-				+0.4
2,957,162	-				-0.9
2,957,205	+				-2.1
2,957,205	+				-1.0
2,957,205	+				-1.9
2,957,205	+				+2.0
2,957,210	+				-0.7
2,957,210	+				+0.3
2,957,210	+				+0.7
2,957,210	+				+0.3
2,957,210	+				-0.7
2,957,213	-				+0.0
2,957,213	-				-0.1
2,957,218	-				+0.5
2,957,218	-				+0.6
2,957,218	-				-0.4
2,957,218	-				-0.5
2,957,246	-				+0.2
2,957,261	+				+0.2
2,957,269	-				-0.4
2,957,269	-				+0.3
2,957,269	-				+0.4
2,957,269	-				+0.7
2,957,269	-				+1.0
2,957,269	-				-0.3
2,957,274	-				-0.3
2,957,274	-				-0.6
2,957,274	-				-1.3
2,957,276	+				+1.3
2,957,284	-				-2.3
2,957,284	-				+0.6
2,957,308	-				-1.2
2,957,337	+				+2.5
2,957,342	+				-0.4
2,957,352	+				-0.8
2,957,352	+				+2.2
2,957,352	+				-0.8
2,957,352	+				-1.8
2,957,352	+				-0.3
2,957,355	-				+0.3
2,957,357	+				+0.6
2,957,357	+				+0.5
2,957,357	+				+0.4
2,957,357	+				+0.3
2,957,358	+				-0.2
2,957,360	-				-0.1
2,957,360	-				-0.4
2,957,360	-				-0.8
2,957,360	-				+0.6
2,957,365	-				-0.3
2,957,365	-				+1.4
2,957,365	-				+0.1
2,957,365	-				-0.4
2,957,365	-				+0.5
2,957,377	+				-0.7
2,957,409	+		GFF2896	0.11	+0.0
2,957,417	+		GFF2896	0.13	+1.0
2,957,417	-		GFF2896	0.13	+0.4
2,957,417	-		GFF2896	0.13	-2.3
2,957,417	-		GFF2896	0.13	-0.5
2,957,420	-		GFF2896	0.14	-1.4
2,957,427	+		GFF2896	0.15	+0.2
2,957,427	+		GFF2896	0.15	-0.3
2,957,427	+		GFF2896	0.15	+0.1
2,957,427	+		GFF2896	0.15	+1.2
2,957,427	+		GFF2896	0.15	-0.1
2,957,427	+		GFF2896	0.15	-0.8
2,957,429	+		GFF2896	0.16	-0.4
2,957,435	-		GFF2896	0.17	-1.0
2,957,435	-		GFF2896	0.17	+0.8
2,957,435	-		GFF2896	0.17	+0.4
2,957,435	-		GFF2896	0.17	-0.7
2,957,435	-		GFF2896	0.17	-0.1
2,957,435	-		GFF2896	0.17	-0.6
2,957,435	-		GFF2896	0.17	+0.2
2,957,435	-		GFF2896	0.17	-0.5
2,957,435	-		GFF2896	0.17	+1.1
2,957,476	+		GFF2896	0.27	+0.2
2,957,486	+		GFF2896	0.29	-0.1
2,957,494	-		GFF2896	0.31	-0.1
2,957,504	-		GFF2896	0.33	-2.0
2,957,517	+		GFF2896	0.36	+2.0
2,957,522	+		GFF2896	0.37	-0.1
2,957,522	+		GFF2896	0.37	-0.6
2,957,524	+		GFF2896	0.38	+0.9
2,957,525	-		GFF2896	0.38	+0.5
2,957,530	-		GFF2896	0.39	+0.4
2,957,530	-		GFF2896	0.39	+0.4
2,957,530	-		GFF2896	0.39	+0.5
2,957,532	-		GFF2896	0.40	-1.1
2,957,532	-		GFF2896	0.40	+1.2
2,957,558	+		GFF2896	0.46	+0.2
2,957,581	+		GFF2896	0.51	+0.5
2,957,581	+		GFF2896	0.51	+1.3
2,957,589	-		GFF2896	0.53	-0.7
2,957,656	-		GFF2896	0.68	+1.3
2,957,656	-		GFF2896	0.68	-0.2
2,957,724	+		GFF2896	0.84	-0.9
2,957,732	-		GFF2896	0.86	-1.3
2,957,732	-		GFF2896	0.86	-0.5
2,957,732	-		GFF2896	0.86	+0.3
2,957,734	+		GFF2896	0.86	-0.3
2,957,749	-		GFF2896	0.89	-0.8
2,957,749	-		GFF2896	0.89	-0.7
2,957,766	+				+0.1
2,957,766	+				+0.2
2,957,766	+				-1.3
2,957,774	-				+1.1
2,957,774	-				+0.5
2,957,774	-				+1.5
2,957,774	-				+0.4
2,957,791	+				+0.3
2,957,791	-				+0.0
2,957,807	+				+1.4
2,957,807	+				+0.0
2,957,807	+				+0.3
2,957,810	-				-0.2
2,957,810	-				+0.0
2,957,826	-				+0.4
2,957,828	+				-1.2
2,957,836	-				-0.1
2,957,836	-				+1.7
2,957,836	-				+0.3
2,957,841	+				-0.8
2,957,848	+				+1.3
2,957,864	+				+0.0
2,957,875	+				-0.2
2,957,875	+				-0.9
2,957,877	+				-0.2
2,957,883	-				+0.7
2,957,883	-				+0.2
2,957,883	-				+0.4
2,957,895	+				+0.2
2,957,926	+				-0.1
2,957,939	+				-0.7
2,957,947	-				+0.7
2,957,949	-				+1.3
2,957,954	+				+0.4
2,957,961	+				-1.1
2,957,964	-				-1.6
2,957,994	-				+0.1
2,958,000	-				-0.8
2,958,002	+				+1.5
2,958,010	-				-0.6
2,958,012	+				-0.3
2,958,049	-		GFF2897	0.14	+0.2
2,958,053	+		GFF2897	0.14	+0.5
2,958,053	+		GFF2897	0.14	-0.7
2,958,061	-		GFF2897	0.15	+0.2
2,958,061	-		GFF2897	0.15	+1.9
2,958,101	-		GFF2897	0.21	-1.3
2,958,101	-		GFF2897	0.21	-0.5
2,958,151	-		GFF2897	0.29	+0.5
2,958,160	+		GFF2897	0.30	-0.4
2,958,235	-		GFF2897	0.41	-1.5
2,958,292	-		GFF2897	0.49	+0.6
2,958,294	+		GFF2897	0.50	-0.7
2,958,294	+		GFF2897	0.50	+0.5
2,958,294	+		GFF2897	0.50	+0.1
2,958,302	-		GFF2897	0.51	-2.1
2,958,302	-		GFF2897	0.51	+0.2
2,958,302	-		GFF2897	0.51	-2.8
2,958,302	-		GFF2897	0.51	+0.6
2,958,302	-		GFF2897	0.51	-0.5
2,958,335	-		GFF2897	0.56	-0.6
2,958,347	+		GFF2897	0.58	+1.0
2,958,352	+		GFF2897	0.58	-0.0
2,958,355	-		GFF2897	0.59	-0.6
2,958,360	-		GFF2897	0.59	+1.4
2,958,360	-		GFF2897	0.59	+0.5
2,958,360	-		GFF2897	0.59	+1.2
2,958,360	-		GFF2897	0.59	+0.8
2,958,389	+		GFF2897	0.64	+0.1
2,958,404	+		GFF2897	0.66	-0.8
2,958,412	-		GFF2897	0.67	+0.7
2,958,415	+		GFF2897	0.68	-0.3
2,958,441	+		GFF2897	0.71	+0.3
2,958,449	+		GFF2897	0.73	-0.5
2,958,449	+		GFF2897	0.73	+0.6
2,958,456	+		GFF2897	0.74	-2.3
2,958,456	+		GFF2897	0.74	-0.8
2,958,457	-		GFF2897	0.74	-0.2
2,958,457	-		GFF2897	0.74	-0.4
2,958,457	-		GFF2897	0.74	+0.4
2,958,457	-		GFF2897	0.74	+1.9
2,958,464	-		GFF2897	0.75	-1.0
2,958,464	-		GFF2897	0.75	-0.5
2,958,474	-		GFF2897	0.76	+1.1
2,958,474	-		GFF2897	0.76	-0.5
2,958,474	-		GFF2897	0.76	+0.6
2,958,498	-		GFF2897	0.80	-0.4
2,958,506	+		GFF2897	0.81	-1.0
2,958,521	+		GFF2897	0.83	+1.5
2,958,565	+		GFF2897	0.90	-2.0
2,958,568	-				+0.0
2,958,576	-				-0.7
2,958,584	+				-1.6
2,958,587	-				+0.2
2,958,587	-				-0.1
2,958,670	+				+0.1
2,958,670	+				+1.0
2,958,670	+				+0.6
2,958,670	+				+0.3
2,958,670	+				-0.3
2,958,670	+				-0.1
2,958,700	+				-1.3
2,958,717	+				-0.7
2,958,725	-				-1.2
2,958,725	-				-0.2
2,958,725	-				+0.9
2,958,749	+		GFF2898	0.14	+0.2
2,958,790	+		GFF2898	0.23	-1.9
2,958,798	-		GFF2898	0.25	+0.6
2,958,827	+		GFF2898	0.31	+0.4
2,958,835	-		GFF2898	0.33	-1.3
2,958,899	-		GFF2898	0.47	-0.6
2,958,899	-		GFF2898	0.47	-0.1
2,958,930	+		GFF2898	0.54	-0.4
2,958,935	+		GFF2898	0.55	+0.2
2,958,938	-		GFF2898	0.55	+0.1
2,959,007	-		GFF2898	0.70	-1.0
2,959,046	+		GFF2898	0.79	+0.3
2,959,052	-		GFF2898	0.80	-0.9
2,959,111	+				-0.4
2,959,119	-				-1.7
2,959,136	+				+0.2
2,959,137	-				+1.0
2,959,141	+				-0.4
2,959,144	-				+0.2
2,959,149	-				-0.4
2,959,150	+				+0.2
2,959,158	-				+1.2
2,959,158	-				-0.8