Strain Fitness in Sphingobium sp. HT1-2 around GFF2852

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,907,215	+				+0.1
2,907,215	+				-0.7
2,907,223	-				-2.2
2,907,223	-				-0.8
2,907,223	-				+0.4
2,907,243	+				+0.1
2,907,273	+				-1.7
2,907,276	-				-0.2
2,907,286	+				+0.3
2,907,299	+				-0.6
2,907,302	-				-1.2
2,907,305	+				+0.2
2,907,322	-		GFF2851	0.11	+1.8
2,907,363	+		GFF2851	0.15	-0.5
2,907,371	-		GFF2851	0.16	-0.4
2,907,371	-		GFF2851	0.16	-0.6
2,907,371	-		GFF2851	0.16	-0.2
2,907,407	+		GFF2851	0.20	-0.3
2,907,422	-		GFF2851	0.22	+0.5
2,907,422	-		GFF2851	0.22	+0.1
2,907,425	-		GFF2851	0.22	-1.0
2,907,427	+		GFF2851	0.23	+0.2
2,907,435	+		GFF2851	0.23	-1.2
2,907,444	+		GFF2851	0.24	-0.2
2,907,452	-		GFF2851	0.25	-0.9
2,907,457	-		GFF2851	0.26	+0.4
2,907,457	-		GFF2851	0.26	-1.5
2,907,457	-		GFF2851	0.26	+0.6
2,907,533	+		GFF2851	0.34	+0.9
2,907,540	+		GFF2851	0.35	-0.1
2,907,553	-		GFF2851	0.37	+0.1
2,907,562	+		GFF2851	0.38	-0.3
2,907,570	-		GFF2851	0.38	-0.5
2,907,582	-		GFF2851	0.40	-0.3
2,907,582	-		GFF2851	0.40	-0.0
2,907,593	+		GFF2851	0.41	-0.3
2,907,601	-		GFF2851	0.42	-0.2
2,907,601	-		GFF2851	0.42	+0.8
2,907,601	-		GFF2851	0.42	-0.5
2,907,602	+		GFF2851	0.42	+0.1
2,907,606	+		GFF2851	0.42	+0.6
2,907,613	+		GFF2851	0.43	-0.1
2,907,613	+		GFF2851	0.43	-2.3
2,907,613	+		GFF2851	0.43	+0.3
2,907,613	+		GFF2851	0.43	-0.5
2,907,613	+		GFF2851	0.43	-0.4
2,907,613	+		GFF2851	0.43	-1.4
2,907,613	+		GFF2851	0.43	-1.7
2,907,621	-		GFF2851	0.44	+0.4
2,907,621	-		GFF2851	0.44	-0.2
2,907,621	-		GFF2851	0.44	-0.8
2,907,621	-		GFF2851	0.44	-0.5
2,907,621	-		GFF2851	0.44	-0.0
2,907,621	-		GFF2851	0.44	-0.8
2,907,621	-		GFF2851	0.44	-1.7
2,907,621	-		GFF2851	0.44	+0.1
2,907,621	-		GFF2851	0.44	-0.6
2,907,630	+		GFF2851	0.45	-1.6
2,907,630	+		GFF2851	0.45	-1.8
2,907,631	+		GFF2851	0.45	-0.9
2,907,651	+		GFF2851	0.47	+0.4
2,907,667	+		GFF2851	0.49	-1.3
2,907,672	+		GFF2851	0.50	-0.7
2,907,680	-		GFF2851	0.51	+0.4
2,907,681	-		GFF2851	0.51	-0.5
2,907,704	+		GFF2851	0.53	+0.4
2,907,719	+		GFF2851	0.55	+0.5
2,907,727	-		GFF2851	0.56	-2.5
2,907,727	-		GFF2851	0.56	+0.4
2,907,734	+		GFF2851	0.57	-0.2
2,907,734	+		GFF2851	0.57	+0.6
2,907,742	-		GFF2851	0.58	+0.6
2,907,742	-		GFF2851	0.58	+0.2
2,907,742	-		GFF2851	0.58	+1.2
2,907,751	-		GFF2851	0.59	-0.2
2,907,769	+		GFF2851	0.61	+1.8
2,907,769	+		GFF2851	0.61	+0.1
2,907,769	+		GFF2851	0.61	-0.1
2,907,799	+		GFF2851	0.64	-1.2
2,907,800	-		GFF2851	0.64	-1.2
2,907,805	-		GFF2851	0.65	-0.3
2,907,815	+		GFF2851	0.66	+0.3
2,907,839	+		GFF2851	0.68	-2.4
2,907,846	+		GFF2851	0.69	-1.2
2,907,851	+		GFF2851	0.70	-0.4
2,907,851	+		GFF2851	0.70	+0.1
2,907,851	+		GFF2851	0.70	-0.7
2,907,851	+		GFF2851	0.70	+0.1
2,907,851	+		GFF2851	0.70	+0.4
2,907,851	+		GFF2851	0.70	+0.4
2,907,859	-		GFF2851	0.71	+1.1
2,907,859	-		GFF2851	0.71	+0.9
2,907,859	-		GFF2851	0.71	+0.6
2,907,859	-		GFF2851	0.71	+0.3
2,907,859	-		GFF2851	0.71	-0.0
2,907,887	+		GFF2851	0.74	-1.9
2,907,890	-		GFF2851	0.74	+0.1
2,907,893	+		GFF2851	0.74	-0.8
2,907,901	-		GFF2851	0.75	+0.7
2,907,924	+		GFF2851	0.78	-0.5
2,907,924	+		GFF2851	0.78	+0.9
2,907,924	-		GFF2851	0.78	-0.4
2,907,932	+		GFF2851	0.79	-2.8
2,907,932	-		GFF2851	0.79	-0.6
2,907,932	-		GFF2851	0.79	-0.7
2,907,947	-		GFF2851	0.80	+0.6
2,908,033	+				-1.5
2,908,041	-				-0.6
2,908,049	+				+0.4
2,908,049	+				-0.3
2,908,049	+				-1.0
2,908,057	-				-0.5
2,908,057	-				-1.2
2,908,066	+				+0.6
2,908,084	-				-0.6
2,908,086	+				+1.0
2,908,086	+				-1.5
2,908,094	-				-0.3
2,908,094	-				-0.1
2,908,123	-				+0.1
2,908,179	-				-2.0
2,908,186	+				-1.2
2,908,186	+				-1.5
2,908,192	-				-0.9
2,908,248	-				-1.2
2,908,248	-				-0.1
2,908,248	-				-1.0
2,908,267	+				-1.6
2,908,276	-				-0.2
2,908,313	+				-0.5
2,908,313	+				-0.2
2,908,323	+				+0.8
2,908,323	+				-0.2
2,908,336	-		GFF2852	0.11	-0.3
2,908,353	-		GFF2852	0.12	-0.2
2,908,359	+		GFF2852	0.13	+0.8
2,908,359	+		GFF2852	0.13	-1.7
2,908,375	+		GFF2852	0.14	-0.6
2,908,375	-		GFF2852	0.14	+1.8
2,908,381	+		GFF2852	0.14	+0.3
2,908,388	+		GFF2852	0.15	+1.1
2,908,388	+		GFF2852	0.15	+1.4
2,908,388	+		GFF2852	0.15	-1.4
2,908,388	+		GFF2852	0.15	-1.0
2,908,396	-		GFF2852	0.16	-1.0
2,908,397	+		GFF2852	0.16	-2.6
2,908,397	+		GFF2852	0.16	-0.9
2,908,397	-		GFF2852	0.16	-0.3
2,908,403	+		GFF2852	0.16	-1.7
2,908,403	+		GFF2852	0.16	-0.9
2,908,405	-		GFF2852	0.16	+0.3
2,908,405	-		GFF2852	0.16	+0.3
2,908,405	-		GFF2852	0.16	-0.4
2,908,405	-		GFF2852	0.16	-1.4
2,908,405	-		GFF2852	0.16	+0.0
2,908,405	-		GFF2852	0.16	+0.7
2,908,405	-		GFF2852	0.16	+0.5
2,908,465	-		GFF2852	0.21	+1.1
2,908,467	-		GFF2852	0.21	+0.4
2,908,467	-		GFF2852	0.21	+0.6
2,908,467	-		GFF2852	0.21	-0.7
2,908,467	-		GFF2852	0.21	+0.9
2,908,500	+		GFF2852	0.24	+0.1
2,908,505	+		GFF2852	0.25	-0.0
2,908,507	-		GFF2852	0.25	-1.3
2,908,512	-		GFF2852	0.25	+0.6
2,908,513	-		GFF2852	0.25	-0.4
2,908,513	-		GFF2852	0.25	+1.1
2,908,546	+		GFF2852	0.28	+1.0
2,908,556	+		GFF2852	0.29	-1.9
2,908,559	-		GFF2852	0.29	+0.2
2,908,559	-		GFF2852	0.29	-1.1
2,908,559	-		GFF2852	0.29	-1.4
2,908,564	-		GFF2852	0.29	-0.2
2,908,569	-		GFF2852	0.30	-1.7
2,908,608	-		GFF2852	0.33	-1.2
2,908,626	+		GFF2852	0.34	-1.4
2,908,626	+		GFF2852	0.34	-1.7
2,908,626	+		GFF2852	0.34	-0.2
2,908,626	+		GFF2852	0.34	+0.1
2,908,634	+		GFF2852	0.35	+1.6
2,908,634	-		GFF2852	0.35	+0.5
2,908,634	-		GFF2852	0.35	-0.6
2,908,634	-		GFF2852	0.35	+0.1
2,908,634	-		GFF2852	0.35	+0.8
2,908,642	-		GFF2852	0.36	-0.2
2,908,645	+		GFF2852	0.36	+0.6
2,908,653	+		GFF2852	0.36	-1.3
2,908,661	+		GFF2852	0.37	+1.1
2,908,674	-		GFF2852	0.38	+1.0
2,908,685	-		GFF2852	0.39	+0.2
2,908,723	-		GFF2852	0.42	+0.0
2,908,730	-		GFF2852	0.43	-1.2
2,908,730	-		GFF2852	0.43	+1.2
2,908,770	-		GFF2852	0.46	+0.7
2,908,775	-		GFF2852	0.46	-0.0
2,908,778	+		GFF2852	0.47	+0.9
2,908,778	+		GFF2852	0.47	-0.1
2,908,789	+		GFF2852	0.47	-0.1
2,908,789	+		GFF2852	0.47	+1.0
2,908,797	-		GFF2852	0.48	+0.0
2,908,841	+		GFF2852	0.52	-0.8
2,908,841	+		GFF2852	0.52	-0.7
2,908,841	+		GFF2852	0.52	-1.3
2,908,842	-		GFF2852	0.52	+0.8
2,908,844	-		GFF2852	0.52	+1.1
2,908,849	+		GFF2852	0.52	+0.7
2,908,849	-		GFF2852	0.52	+0.4
2,908,849	-		GFF2852	0.52	-0.8
2,908,849	-		GFF2852	0.52	+0.4
2,908,861	+		GFF2852	0.53	-0.7
2,908,861	+		GFF2852	0.53	-0.8
2,908,861	+		GFF2852	0.53	+0.8
2,908,863	+		GFF2852	0.53	-0.8
2,908,863	+		GFF2852	0.53	-0.5
2,908,869	-		GFF2852	0.54	-0.2
2,908,871	-		GFF2852	0.54	-0.4
2,908,871	-		GFF2852	0.54	-1.0
2,908,871	-		GFF2852	0.54	+0.1
2,908,871	-		GFF2852	0.54	+1.1
2,908,905	+		GFF2852	0.57	-0.7
2,908,953	-		GFF2852	0.61	+0.6
2,908,954	-		GFF2852	0.61	-0.5
2,908,954	-		GFF2852	0.61	+1.5
2,908,958	-		GFF2852	0.61	-0.4
2,908,978	+		GFF2852	0.63	-2.9
2,908,986	+		GFF2852	0.63	-1.7
2,908,991	+		GFF2852	0.64	-1.6
2,908,992	+		GFF2852	0.64	-1.6
2,909,067	+		GFF2852	0.70	-0.3
2,909,069	+		GFF2852	0.70	-0.2
2,909,106	+		GFF2852	0.73	-0.2
2,909,114	-		GFF2852	0.74	-0.4
2,909,132	-		GFF2852	0.75	+0.0
2,909,134	+		GFF2852	0.75	-0.2
2,909,142	-		GFF2852	0.76	-1.5
2,909,158	-		GFF2852	0.77	-0.9
2,909,195	-		GFF2852	0.80	-1.6
2,909,195	-		GFF2852	0.80	-0.1
2,909,207	+		GFF2852	0.81	-0.1
2,909,214	+		GFF2852	0.82	+0.3
2,909,215	-		GFF2852	0.82	-0.3
2,909,226	-		GFF2852	0.83	-0.2
2,909,252	-		GFF2852	0.85	+0.9
2,909,287	+		GFF2852	0.88	-0.6
2,909,294	-		GFF2852	0.88	+0.8
2,909,295	-		GFF2852	0.88	-1.2
2,909,295	-		GFF2852	0.88	-2.0
2,909,295	-		GFF2852	0.88	+0.4
2,909,295	-		GFF2852	0.88	-1.6
2,909,320	+				+0.1
2,909,320	+				+0.2
2,909,320	+				-0.9
2,909,328	-				-1.2
2,909,328	-				+0.2
2,909,328	-				-0.6
2,909,352	-				-0.7
2,909,397	-				+0.8
2,909,397	-				+0.3
2,909,426	+				-0.0
2,909,429	-				-0.8
2,909,449	-				+0.4
2,909,469	+				-0.9
2,909,477	-				-1.0
2,909,486	+				+0.7
2,909,486	+				+1.8
2,909,487	+				-1.2
2,909,487	+				-0.1
2,909,491	+				-0.0
2,909,495	-				-1.9
2,909,495	-				-0.6
2,909,527	+				+0.7
2,909,527	+				+2.1
2,909,535	-				+0.6
2,909,558	+				-0.6
2,909,558	+				-2.0
2,909,558	+				-0.7
2,909,558	+				-0.3
2,909,558	+				-1.2
2,909,558	+				-1.2
2,909,558	+				+0.7
2,909,558	+				-1.5
2,909,558	+				+0.0
2,909,558	+				-0.9
2,909,560	+				-1.8
2,909,560	+				-0.9
2,909,560	-				+0.5
2,909,565	+				+0.9
2,909,565	+				-0.1
2,909,565	+				+1.2
2,909,565	+				-0.5
2,909,565	+				+1.5
2,909,565	+				-0.2
2,909,565	+				+1.0
2,909,566	-				-1.2
2,909,566	-				-0.2
2,909,566	-				-0.4
2,909,566	-				-0.9
2,909,566	-				+0.4
2,909,566	-				+0.0
2,909,566	-				+1.5
2,909,568	-				-1.2
2,909,568	-				+0.6
2,909,573	-				-0.4
2,909,573	-				+0.1
2,909,573	-				-1.0
2,909,573	-				-0.1
2,909,573	-				-1.3
2,909,573	-				+0.2
2,909,573	-				-0.8
2,909,578	+				-0.5
2,909,583	+				-0.5
2,909,583	+				-0.1
2,909,583	+				-0.1
2,909,588	-				+0.3
2,909,601	-				-0.2
2,909,641	+		GFF2853	0.12	+0.2
2,909,641	+		GFF2853	0.12	+0.1
2,909,649	-		GFF2853	0.13	+0.1
2,909,649	-		GFF2853	0.13	+0.7
2,909,649	-		GFF2853	0.13	-0.5
2,909,649	-		GFF2853	0.13	-1.1
2,909,666	-		GFF2853	0.14	-1.8
2,909,666	-		GFF2853	0.14	-0.8
2,909,731	+		GFF2853	0.18	-1.0
2,909,738	-		GFF2853	0.19	-0.4
2,909,738	-		GFF2853	0.19	-0.5
2,909,780	-		GFF2853	0.22	-2.8
2,909,855	+		GFF2853	0.27	+0.7
2,909,855	+		GFF2853	0.27	+0.4
2,909,855	+		GFF2853	0.27	+0.2
2,909,855	+		GFF2853	0.27	-0.1
2,909,855	+		GFF2853	0.27	+0.0
2,909,855	+		GFF2853	0.27	-0.9
2,909,857	-		GFF2853	0.27	-0.9
2,909,863	-		GFF2853	0.27	-0.6
2,909,863	-		GFF2853	0.27	-0.6
2,909,863	-		GFF2853	0.27	+1.2
2,909,866	+		GFF2853	0.27	+0.7
2,909,869	-		GFF2853	0.28	-0.9
2,909,872	+		GFF2853	0.28	-1.2
2,909,876	+		GFF2853	0.28	-1.4
2,909,880	-		GFF2853	0.28	-0.9
2,909,880	-		GFF2853	0.28	-1.1
2,909,880	-		GFF2853	0.28	+0.2
2,909,901	+		GFF2853	0.30	-1.5
2,909,901	+		GFF2853	0.30	+1.1
2,909,901	+		GFF2853	0.30	+0.4
2,909,901	+		GFF2853	0.30	+0.4
2,909,906	+		GFF2853	0.30	-0.9
2,909,906	+		GFF2853	0.30	+0.1
2,909,909	-		GFF2853	0.30	-0.9
2,909,914	-		GFF2853	0.30	+0.3
2,909,915	-		GFF2853	0.31	+0.4
2,909,922	+		GFF2853	0.31	-0.1
2,909,922	+		GFF2853	0.31	+0.3
2,909,922	+		GFF2853	0.31	+0.0
2,909,922	+		GFF2853	0.31	+0.4
2,909,922	+		GFF2853	0.31	-0.6
2,909,922	+		GFF2853	0.31	-0.8
2,909,924	-		GFF2853	0.31	+1.2
2,909,930	-		GFF2853	0.32	-0.3
2,909,955	-		GFF2853	0.33	+1.5
2,909,968	+		GFF2853	0.34	-0.3
2,909,969	-		GFF2853	0.34	-1.2
2,909,982	+		GFF2853	0.35	-1.1
2,909,982	+		GFF2853	0.35	-1.4
2,909,982	+		GFF2853	0.35	-0.6
2,909,990	-		GFF2853	0.36	-0.4
2,909,990	-		GFF2853	0.36	+0.4
2,910,019	-		GFF2853	0.37	-1.9
2,910,038	-		GFF2853	0.39	-1.1
2,910,043	+		GFF2853	0.39	+0.8
2,910,043	+		GFF2853	0.39	+0.9
2,910,043	+		GFF2853	0.39	-0.9
2,910,043	+		GFF2853	0.39	+0.4
2,910,043	+		GFF2853	0.39	-0.2
2,910,050	+		GFF2853	0.39	+0.1
2,910,050	+		GFF2853	0.39	+0.9
2,910,050	+		GFF2853	0.39	+0.0
2,910,051	-		GFF2853	0.40	+1.3
2,910,051	-		GFF2853	0.40	-2.7
2,910,058	-		GFF2853	0.40	+1.2
2,910,058	-		GFF2853	0.40	-1.7
2,910,058	-		GFF2853	0.40	+1.6
2,910,099	-		GFF2853	0.43	-0.2
2,910,101	-		GFF2853	0.43	+0.2
2,910,121	-		GFF2853	0.44	-0.6
2,910,122	-		GFF2853	0.44	-0.9
2,910,125	+		GFF2853	0.44	-0.9
2,910,134	-		GFF2853	0.45	-1.1
2,910,137	+		GFF2853	0.45	-0.2
2,910,181	-		GFF2853	0.48	+1.3
2,910,199	-		GFF2853	0.49	+0.0
2,910,203	+		GFF2853	0.50	-1.0
2,910,206	-		GFF2853	0.50	+0.0
2,910,229	+		GFF2853	0.51	-0.7
2,910,237	-		GFF2853	0.52	+0.4
2,910,237	-		GFF2853	0.52	+0.0
2,910,246	+		GFF2853	0.52	+0.4
2,910,251	+		GFF2853	0.53	-1.2
2,910,257	+		GFF2853	0.53	+1.9
2,910,322	-		GFF2853	0.58	-0.2
2,910,327	-		GFF2853	0.58	-1.9
2,910,371	+		GFF2853	0.61	-0.5
2,910,371	+		GFF2853	0.61	+0.4
2,910,371	+		GFF2853	0.61	-0.9
2,910,379	+		GFF2853	0.61	-2.4
2,910,379	+		GFF2853	0.61	-0.9
2,910,379	+		GFF2853	0.61	-1.2
2,910,379	+		GFF2853	0.61	-0.7
2,910,379	+		GFF2853	0.61	-0.4
2,910,379	-		GFF2853	0.61	-1.5
2,910,380	-		GFF2853	0.61	+0.5
2,910,384	+		GFF2853	0.62	+1.0
2,910,384	+		GFF2853	0.62	+0.1
2,910,387	-		GFF2853	0.62	-0.5
2,910,387	-		GFF2853	0.62	-0.9
2,910,387	-		GFF2853	0.62	-0.2
2,910,387	-		GFF2853	0.62	+0.1
2,910,387	-		GFF2853	0.62	+0.2
2,910,387	-		GFF2853	0.62	+0.1
2,910,387	-		GFF2853	0.62	-1.1
2,910,387	-		GFF2853	0.62	-0.1
2,910,387	-		GFF2853	0.62	+0.7
2,910,387	-		GFF2853	0.62	-0.0
2,910,387	-		GFF2853	0.62	-0.9
2,910,387	-		GFF2853	0.62	+1.1
2,910,424	-		GFF2853	0.64	-0.3