Strain Fitness in Sphingobium sp. HT1-2 around GFF2827

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,870,090	+		GFF2826	0.43	+1.9
2,870,098	-		GFF2826	0.44	+0.8
2,870,121	+		GFF2826	0.45	-0.0
2,870,121	+		GFF2826	0.45	-0.3
2,870,121	+		GFF2826	0.45	-1.1
2,870,129	-		GFF2826	0.46	+0.6
2,870,174	+		GFF2826	0.49	-0.7
2,870,174	+		GFF2826	0.49	-0.3
2,870,181	+		GFF2826	0.49	-0.7
2,870,181	+		GFF2826	0.49	+0.5
2,870,181	+		GFF2826	0.49	-0.8
2,870,189	-		GFF2826	0.50	-1.3
2,870,224	-		GFF2826	0.52	+0.5
2,870,228	+		GFF2826	0.52	-0.7
2,870,228	+		GFF2826	0.52	+1.5
2,870,252	+		GFF2826	0.54	+0.7
2,870,285	+		GFF2826	0.56	+0.1
2,870,295	+		GFF2826	0.57	-1.3
2,870,297	+		GFF2826	0.57	-1.0
2,870,297	+		GFF2826	0.57	+0.6
2,870,305	-		GFF2826	0.58	+0.3
2,870,305	-		GFF2826	0.58	+1.1
2,870,305	-		GFF2826	0.58	-0.7
2,870,362	+		GFF2826	0.62	+0.4
2,870,368	+		GFF2826	0.62	-0.1
2,870,381	+		GFF2826	0.63	-0.1
2,870,381	+		GFF2826	0.63	+2.3
2,870,381	+		GFF2826	0.63	+0.7
2,870,381	+		GFF2826	0.63	-1.3
2,870,381	+		GFF2826	0.63	+0.1
2,870,381	+		GFF2826	0.63	+1.1
2,870,381	+		GFF2826	0.63	-0.0
2,870,381	+		GFF2826	0.63	-0.3
2,870,381	+		GFF2826	0.63	-0.6
2,870,381	+		GFF2826	0.63	+0.4
2,870,381	+		GFF2826	0.63	+0.4
2,870,381	+		GFF2826	0.63	-0.2
2,870,381	+		GFF2826	0.63	+1.2
2,870,381	+		GFF2826	0.63	+1.1
2,870,381	+		GFF2826	0.63	-0.7
2,870,381	+		GFF2826	0.63	-1.9
2,870,381	+		GFF2826	0.63	-1.9
2,870,381	+		GFF2826	0.63	-1.0
2,870,381	+		GFF2826	0.63	+0.1
2,870,381	+		GFF2826	0.63	+0.5
2,870,389	-		GFF2826	0.63	-1.7
2,870,389	-		GFF2826	0.63	+1.5
2,870,389	-		GFF2826	0.63	+0.0
2,870,389	-		GFF2826	0.63	+0.3
2,870,389	-		GFF2826	0.63	+0.2
2,870,389	-		GFF2826	0.63	+1.5
2,870,389	-		GFF2826	0.63	-0.7
2,870,389	-		GFF2826	0.63	+0.7
2,870,389	-		GFF2826	0.63	+0.3
2,870,389	-		GFF2826	0.63	+0.6
2,870,389	-		GFF2826	0.63	+0.7
2,870,389	-		GFF2826	0.63	+0.7
2,870,389	-		GFF2826	0.63	-0.3
2,870,389	-		GFF2826	0.63	+0.3
2,870,389	-		GFF2826	0.63	-0.3
2,870,389	-		GFF2826	0.63	-1.4
2,870,389	-		GFF2826	0.63	-0.7
2,870,389	-		GFF2826	0.63	-1.2
2,870,389	-		GFF2826	0.63	+0.6
2,870,389	-		GFF2826	0.63	+2.3
2,870,389	-		GFF2826	0.63	-2.6
2,870,389	-		GFF2826	0.63	+0.8
2,870,399	+		GFF2826	0.64	-0.2
2,870,399	+		GFF2826	0.64	-0.4
2,870,399	+		GFF2826	0.64	-2.1
2,870,407	-		GFF2826	0.65	+0.8
2,870,407	-		GFF2826	0.65	+0.5
2,870,407	-		GFF2826	0.65	+1.2
2,870,407	-		GFF2826	0.65	-0.5
2,870,413	+		GFF2826	0.65	+0.5
2,870,426	-		GFF2826	0.66	-1.7
2,870,426	-		GFF2826	0.66	+0.2
2,870,456	+		GFF2826	0.68	+0.0
2,870,464	-		GFF2826	0.69	+1.0
2,870,473	-		GFF2826	0.69	-0.1
2,870,473	-		GFF2826	0.69	-0.2
2,870,473	-		GFF2826	0.69	-0.3
2,870,511	+		GFF2826	0.72	-0.4
2,870,519	-		GFF2826	0.72	-0.1
2,870,519	-		GFF2826	0.72	-0.2
2,870,529	-		GFF2826	0.73	-0.4
2,870,538	+		GFF2826	0.74	+1.0
2,870,544	+		GFF2826	0.74	-0.6
2,870,552	-		GFF2826	0.75	-0.8
2,870,556	-		GFF2826	0.75	-0.8
2,870,562	-		GFF2826	0.75	-0.4
2,870,563	-		GFF2826	0.75	-1.8
2,870,566	+		GFF2826	0.75	-0.9
2,870,632	-		GFF2826	0.80	+0.6
2,870,652	+		GFF2826	0.81	-1.2
2,870,657	+		GFF2826	0.82	+1.3
2,870,681	+		GFF2826	0.83	+0.4
2,870,681	+		GFF2826	0.83	-1.7
2,870,681	+		GFF2826	0.83	-0.8
2,870,682	+		GFF2826	0.83	+1.5
2,870,684	+		GFF2826	0.84	+1.0
2,870,684	+		GFF2826	0.84	+1.3
2,870,684	+		GFF2826	0.84	+1.1
2,870,690	-		GFF2826	0.84	+0.6
2,870,692	-		GFF2826	0.84	-1.7
2,870,701	+		GFF2826	0.85	+0.3
2,870,727	+		GFF2826	0.86	+0.8
2,870,746	+		GFF2826	0.88	-0.0
2,870,765	+		GFF2826	0.89	-0.2
2,870,765	+		GFF2826	0.89	-0.7
2,870,773	-		GFF2826	0.90	+0.1
2,870,773	-		GFF2826	0.90	+0.3
2,870,773	-		GFF2826	0.90	+2.5
2,870,813	-				+0.1
2,870,815	+				+1.3
2,870,815	+				+0.2
2,870,817	+				-0.4
2,870,817	+				-0.8
2,870,818	-				-0.3
2,870,823	-				-1.2
2,870,825	+				+0.0
2,870,833	-				-0.2
2,870,838	-				+0.7
2,870,842	-				-1.3
2,870,868	+				+0.1
2,870,868	+				+0.7
2,870,868	+				+0.5
2,870,873	+				-0.5
2,870,873	+				+0.1
2,870,873	+				+0.8
2,870,874	-				+0.2
2,870,876	-				-1.3
2,870,881	-				-0.8
2,870,881	-				-0.6
2,870,908	-				-0.2
2,870,926	-				+0.2
2,870,926	-				-0.4
2,870,933	-				-0.9
2,871,042	-				-0.3
2,871,051	+				+0.5
2,871,052	-				-0.3
2,871,059	-				+1.0
2,871,069	-				-0.3
2,871,075	-				+1.1
2,871,093	+				+0.5
2,871,093	+				-0.4
2,871,093	+				-0.8
2,871,093	+				-0.7
2,871,101	-				+0.5
2,871,101	-				+1.1
2,871,101	-				-0.0
2,871,116	+				+0.5
2,871,131	+				+0.2
2,871,131	+				-0.5
2,871,131	+				+0.3
2,871,131	+				-1.4
2,871,131	+				-0.4
2,871,131	+				-0.6
2,871,134	-				-0.3
2,871,134	-				+0.5
2,871,139	-				-0.2
2,871,139	-				+0.4
2,871,139	-				-0.1
2,871,141	-				+0.9
2,871,168	+				-1.1
2,871,168	+				+0.5
2,871,176	-				-0.4
2,871,221	-				+1.3
2,871,236	+				-1.5
2,871,253	-		GFF2827	0.11	+0.1
2,871,345	+		GFF2827	0.16	-0.1
2,871,345	+		GFF2827	0.16	-0.5
2,871,363	-		GFF2827	0.17	+0.2
2,871,386	+		GFF2827	0.18	-1.1
2,871,394	-		GFF2827	0.19	+0.0
2,871,394	-		GFF2827	0.19	-1.0
2,871,396	+		GFF2827	0.19	+0.4
2,871,396	+		GFF2827	0.19	-1.0
2,871,400	-		GFF2827	0.19	-1.0
2,871,423	+		GFF2827	0.21	+0.4
2,871,429	+		GFF2827	0.21	-1.3
2,871,430	+		GFF2827	0.21	+0.9
2,871,472	-		GFF2827	0.24	+0.0
2,871,488	+		GFF2827	0.25	-0.1
2,871,550	+		GFF2827	0.28	-0.1
2,871,567	-		GFF2827	0.29	+0.2
2,871,579	+		GFF2827	0.30	+0.4
2,871,587	-		GFF2827	0.30	+0.8
2,871,587	-		GFF2827	0.30	-1.0
2,871,602	-		GFF2827	0.31	+0.7
2,871,660	-		GFF2827	0.35	-1.4
2,871,740	+		GFF2827	0.40	-0.6
2,871,740	+		GFF2827	0.40	-0.6
2,871,746	+		GFF2827	0.40	-1.0
2,871,749	+		GFF2827	0.40	-1.1
2,871,757	+		GFF2827	0.41	-0.2
2,871,779	-		GFF2827	0.42	-1.8
2,871,779	-		GFF2827	0.42	-0.1
2,871,810	-		GFF2827	0.44	-0.1
2,871,810	-		GFF2827	0.44	-0.9
2,871,819	+		GFF2827	0.44	+1.3
2,871,846	+		GFF2827	0.46	-0.3
2,871,934	+		GFF2827	0.51	-0.9
2,871,980	-		GFF2827	0.54	-0.6
2,871,990	+		GFF2827	0.55	+0.5
2,872,049	-		GFF2827	0.58	-1.8
2,872,049	-		GFF2827	0.58	-0.3
2,872,054	+		GFF2827	0.58	+0.7
2,872,054	-		GFF2827	0.58	-0.3
2,872,068	+		GFF2827	0.59	+0.7
2,872,100	-		GFF2827	0.61	+0.7
2,872,104	+		GFF2827	0.61	+0.6
2,872,112	-		GFF2827	0.62	+0.3
2,872,112	-		GFF2827	0.62	+1.3
2,872,112	-		GFF2827	0.62	-1.6
2,872,114	-		GFF2827	0.62	-0.9
2,872,119	+		GFF2827	0.62	-0.5
2,872,154	-		GFF2827	0.64	-0.5
2,872,176	+		GFF2827	0.66	+0.7
2,872,176	+		GFF2827	0.66	-1.0
2,872,184	-		GFF2827	0.66	-0.2
2,872,191	-		GFF2827	0.66	-1.2
2,872,195	+		GFF2827	0.67	-0.1
2,872,200	+		GFF2827	0.67	+0.2
2,872,200	+		GFF2827	0.67	+1.1
2,872,203	-		GFF2827	0.67	+0.3
2,872,208	-		GFF2827	0.68	+0.8
2,872,208	-		GFF2827	0.68	-1.4
2,872,230	-		GFF2827	0.69	-2.0
2,872,236	-		GFF2827	0.69	+0.1
2,872,236	-		GFF2827	0.69	+0.8
2,872,236	-		GFF2827	0.69	-0.7
2,872,246	-		GFF2827	0.70	-0.8
2,872,375	-		GFF2827	0.77	-0.5
2,872,375	-		GFF2827	0.77	+0.5
2,872,407	+		GFF2827	0.79	+0.3
2,872,442	+		GFF2827	0.81	+0.8
2,872,446	+		GFF2827	0.82	+0.3
2,872,459	-		GFF2827	0.82	-0.6
2,872,491	-		GFF2827	0.84	+0.5
2,872,541	+		GFF2827	0.87	-1.3
2,872,541	+		GFF2827	0.87	+0.3
2,872,546	+		GFF2827	0.88	-0.3
2,872,549	-		GFF2827	0.88	-1.4
2,872,554	-		GFF2827	0.88	-0.1
2,872,566	-		GFF2827	0.89	+0.1
2,872,574	+		GFF2827	0.89	+1.5
2,872,582	-		GFF2827	0.90	-1.5
2,872,603	-				+0.4
2,872,620	+				+0.8
2,872,622	+				-0.6
2,872,634	+				-0.2
2,872,639	+				-0.2
2,872,644	+				-1.4
2,872,652	-				-1.0
2,872,652	-				-0.5
2,872,655	-				+0.5
2,872,655	-				+0.7
2,872,675	+				-0.1
2,872,684	-				+0.6
2,872,702	-				+0.9
2,872,741	-				-1.0
2,872,741	-				+0.2
2,872,751	-				-1.5
2,872,756	-				+1.0
2,872,761	-				+0.2
2,872,761	-				-0.6
2,872,773	+				+1.1
2,872,828	-				+0.0
2,872,901	-		GFF2828	0.24	-1.1
2,872,904	+		GFF2828	0.24	+0.1
2,872,905	+		GFF2828	0.24	+0.1
2,872,912	-		GFF2828	0.26	-1.3
2,873,033	+		GFF2828	0.52	-1.4
2,873,033	+		GFF2828	0.52	+0.5
2,873,041	-		GFF2828	0.54	+0.9
2,873,045	+		GFF2828	0.55	+0.4
2,873,045	+		GFF2828	0.55	+1.2
2,873,050	+		GFF2828	0.56	+1.2
2,873,050	+		GFF2828	0.56	-1.6
2,873,053	-		GFF2828	0.56	+0.2
2,873,058	-		GFF2828	0.58	-0.3
2,873,077	-		GFF2828	0.62	+0.5
2,873,077	-		GFF2828	0.62	-3.0
2,873,077	-		GFF2828	0.62	-0.4
2,873,114	+		GFF2828	0.70	-0.8
2,873,154	-		GFF2828	0.78	+0.0
2,873,159	+		GFF2828	0.79	+0.2
2,873,159	+		GFF2828	0.79	-1.2
2,873,159	+		GFF2828	0.79	-1.0
2,873,160	+		GFF2828	0.80	-0.2
2,873,160	+		GFF2828	0.80	-0.7
2,873,160	+		GFF2828	0.80	-0.3
2,873,160	+		GFF2828	0.80	-0.0
2,873,167	-		GFF2828	0.81	-0.4
2,873,168	-		GFF2828	0.81	+1.6
2,873,168	-		GFF2828	0.81	-0.6
2,873,188	+		GFF2828	0.86	+0.4
2,873,287	-				-0.3
2,873,374	+				-1.7
2,873,374	+				+0.1
2,873,396	+				-1.0
2,873,401	+				-0.7
2,873,416	+				-1.0
2,873,418	+				-1.3
2,873,420	+				-1.8
2,873,452	-				-1.2
2,873,473	-				-0.8
2,873,475	-				-0.4
2,873,475	-				-0.1
2,873,475	-				+1.6
2,873,519	+		GFF2829	0.13	-0.0
2,873,534	+		GFF2829	0.15	-0.6
2,873,572	-		GFF2829	0.18	-0.6
2,873,572	-		GFF2829	0.18	+1.4
2,873,615	-		GFF2829	0.23	+0.4
2,873,618	+		GFF2829	0.23	-1.7
2,873,618	+		GFF2829	0.23	-0.0
2,873,626	-		GFF2829	0.24	-0.4
2,873,626	-		GFF2829	0.24	+1.4
2,873,626	-		GFF2829	0.24	+0.8
2,873,649	+		GFF2829	0.26	-0.4
2,873,659	+		GFF2829	0.27	+0.8
2,873,659	+		GFF2829	0.27	-0.3
2,873,659	+		GFF2829	0.27	-0.8
2,873,659	+		GFF2829	0.27	-2.4
2,873,659	+		GFF2829	0.27	-0.2
2,873,667	-		GFF2829	0.27	+0.0
2,873,667	-		GFF2829	0.27	+0.1
2,873,667	-		GFF2829	0.27	-0.5
2,873,687	+		GFF2829	0.29	-1.1
2,873,700	+		GFF2829	0.31	-1.2
2,873,705	-		GFF2829	0.31	+1.0
2,873,708	-		GFF2829	0.31	-0.7
2,873,717	-		GFF2829	0.32	+0.7
2,873,728	-		GFF2829	0.33	-0.1