Strain Fitness in Sphingobium sp. HT1-2 around GFF282

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF279 and GFF280 overlap by 4 nucleotidesGFF280 and GFF281 are separated by 61 nucleotidesGFF281 and GFF282 are separated by 56 nucleotidesGFF282 and GFF283 are separated by 263 nucleotides GFF279 - hypothetical protein, at 273,653 to 273,994 GFF279 GFF280 - hypothetical protein, at 273,991 to 274,344 GFF280 GFF281 - hypothetical protein, at 274,406 to 274,858 GFF281 GFF282 - hypothetical protein, at 274,915 to 275,271 GFF282 GFF283 - hypothetical protein, at 275,535 to 278,786 GFF283 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.935 kb on - strand, within GFF279at 273.937 kb on + strand, within GFF279at 273.943 kb on + strand, within GFF279at 273.966 kb on - strandat 273.983 kb on - strandat 273.985 kb on + strandat 273.990 kb on + strandat 273.995 kb on + strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.004 kb on + strandat 274.009 kb on + strandat 274.017 kb on + strandat 274.019 kb on + strandat 274.025 kb on - strandat 274.025 kb on - strandat 274.027 kb on - strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.069 kb on - strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.126 kb on - strand, within GFF280at 274.128 kb on + strand, within GFF280at 274.291 kb on + strand, within GFF280at 274.317 kb on - strandat 274.347 kb on - strandat 274.531 kb on + strand, within GFF281at 274.531 kb on + strand, within GFF281at 274.531 kb on + strand, within GFF281at 274.531 kb on + strand, within GFF281at 274.537 kb on - strand, within GFF281at 274.539 kb on - strand, within GFF281at 274.539 kb on - strand, within GFF281at 274.579 kb on + strand, within GFF281at 274.596 kb on - strand, within GFF281at 274.626 kb on + strand, within GFF281at 274.636 kb on + strand, within GFF281at 274.639 kb on - strand, within GFF281at 274.639 kb on - strand, within GFF281at 274.647 kb on + strand, within GFF281at 274.647 kb on + strand, within GFF281at 274.655 kb on - strand, within GFF281at 274.691 kb on - strand, within GFF281at 274.717 kb on + strand, within GFF281at 274.720 kb on - strand, within GFF281at 274.720 kb on - strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.756 kb on - strand, within GFF281at 274.769 kb on + strand, within GFF281at 274.769 kb on - strand, within GFF281at 274.775 kb on - strand, within GFF281at 274.777 kb on - strand, within GFF281at 274.778 kb on + strand, within GFF281at 274.778 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.792 kb on - strand, within GFF281at 274.794 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.798 kb on + strand, within GFF281at 274.801 kb on - strand, within GFF281at 274.802 kb on - strand, within GFF281at 274.806 kb on - strand, within GFF281at 274.806 kb on - strand, within GFF281at 274.830 kb on - strandat 274.867 kb on - strandat 274.882 kb on - strandat 274.993 kb on + strand, within GFF282at 274.993 kb on + strand, within GFF282at 275.050 kb on + strand, within GFF282at 275.050 kb on + strand, within GFF282at 275.058 kb on - strand, within GFF282at 275.058 kb on - strand, within GFF282at 275.058 kb on - strand, within GFF282at 275.104 kb on + strand, within GFF282at 275.104 kb on + strand, within GFF282at 275.112 kb on - strand, within GFF282at 275.170 kb on - strand, within GFF282at 275.244 kb on - strandat 275.343 kb on - strandat 275.362 kb on + strandat 275.370 kb on - strandat 275.417 kb on + strandat 275.419 kb on + strandat 275.422 kb on + strandat 275.461 kb on - strandat 275.461 kb on - strandat 275.469 kb on - strandat 275.610 kb on + strandat 275.610 kb on + strandat 275.610 kb on + strandat 275.665 kb on + strandat 275.665 kb on + strandat 275.665 kb on + strandat 275.670 kb on + strandat 275.673 kb on - strandat 275.687 kb on - strandat 275.690 kb on + strandat 275.694 kb on + strandat 275.698 kb on - strandat 275.710 kb on + strandat 275.724 kb on + strandat 275.724 kb on + strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.748 kb on + strandat 275.781 kb on - strandat 275.781 kb on - strandat 275.781 kb on - strandat 275.788 kb on + strandat 275.802 kb on + strandat 275.804 kb on + strandat 275.810 kb on - strandat 275.810 kb on - strandat 275.812 kb on - strandat 275.812 kb on - strandat 275.824 kb on + strandat 275.824 kb on + strandat 275.824 kb on + strandat 275.824 kb on + strandat 275.824 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.829 kb on + strandat 275.832 kb on - strandat 275.832 kb on - strandat 275.837 kb on - strandat 275.837 kb on - strandat 275.837 kb on - strandat 275.837 kb on - strandat 275.837 kb on - strandat 275.842 kb on - strandat 275.860 kb on + strandat 275.863 kb on - strand, within GFF283at 275.868 kb on - strand, within GFF283at 275.868 kb on - strand, within GFF283at 275.868 kb on - strand, within GFF283at 275.872 kb on + strand, within GFF283at 275.872 kb on + strand, within GFF283at 275.880 kb on - strand, within GFF283at 275.880 kb on - strand, within GFF283at 275.895 kb on + strand, within GFF283at 275.895 kb on + strand, within GFF283at 275.898 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.903 kb on - strand, within GFF283at 275.908 kb on - strand, within GFF283at 275.924 kb on - strand, within GFF283at 275.924 kb on - strand, within GFF283at 275.929 kb on + strand, within GFF283at 275.937 kb on - strand, within GFF283at 275.944 kb on + strand, within GFF283at 275.945 kb on - strand, within GFF283at 275.946 kb on + strand, within GFF283at 275.950 kb on - strand, within GFF283at 275.954 kb on - strand, within GFF283at 275.973 kb on - strand, within GFF283at 275.980 kb on + strand, within GFF283at 275.983 kb on - strand, within GFF283at 276.013 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.019 kb on + strand, within GFF283at 276.027 kb on - strand, within GFF283at 276.027 kb on - strand, within GFF283at 276.028 kb on + strand, within GFF283at 276.033 kb on + strand, within GFF283at 276.033 kb on + strand, within GFF283at 276.041 kb on - strand, within GFF283at 276.050 kb on + strand, within GFF283at 276.051 kb on + strand, within GFF283at 276.058 kb on + strand, within GFF283at 276.058 kb on + strand, within GFF283at 276.058 kb on + strand, within GFF283at 276.058 kb on + strand, within GFF283at 276.066 kb on - strand, within GFF283at 276.066 kb on - strand, within GFF283at 276.066 kb on - strand, within GFF283at 276.066 kb on - strand, within GFF283at 276.072 kb on - strand, within GFF283at 276.073 kb on - strand, within GFF283at 276.084 kb on + strand, within GFF283at 276.084 kb on - strand, within GFF283at 276.104 kb on + strand, within GFF283at 276.112 kb on - strand, within GFF283at 276.166 kb on - strand, within GFF283at 276.172 kb on + strand, within GFF283at 276.172 kb on + strand, within GFF283at 276.172 kb on + strand, within GFF283at 276.180 kb on - strand, within GFF283at 276.181 kb on + strand, within GFF283at 276.182 kb on + strand, within GFF283at 276.199 kb on - strand, within GFF283at 276.238 kb on - strand, within GFF283at 276.258 kb on - strand, within GFF283at 276.264 kb on - strand, within GFF283at 276.266 kb on - strand, within GFF283

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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273,927 + GFF279 0.80 -0.1
273,927 + GFF279 0.80 +0.3
273,927 + GFF279 0.80 -1.2
273,935 - GFF279 0.82 -0.7
273,937 + GFF279 0.83 -0.5
273,943 + GFF279 0.85 -1.2
273,966 - +1.0
273,983 - +0.3
273,985 + -1.6
273,990 + +1.3
273,995 + -0.9
274,003 - -0.3
274,003 - +2.0
274,003 - +1.4
274,003 - +0.2
274,004 + -0.9
274,009 + -0.5
274,017 + -0.3
274,019 + -0.3
274,025 - -0.5
274,025 - +0.5
274,027 - GFF280 0.10 -0.9
274,029 + GFF280 0.11 -0.9
274,029 + GFF280 0.11 -0.6
274,037 - GFF280 0.13 -0.2
274,037 - GFF280 0.13 -0.4
274,037 - GFF280 0.13 +1.9
274,061 + GFF280 0.20 -0.9
274,061 + GFF280 0.20 -0.8
274,069 - GFF280 0.22 -0.1
274,105 + GFF280 0.32 -0.0
274,105 + GFF280 0.32 -0.1
274,126 - GFF280 0.38 -1.0
274,128 + GFF280 0.39 +1.4
274,291 + GFF280 0.85 +0.3
274,317 - -1.4
274,347 - -2.0
274,531 + GFF281 0.28 -1.5
274,531 + GFF281 0.28 -0.9
274,531 + GFF281 0.28 -0.4
274,531 + GFF281 0.28 -0.7
274,537 - GFF281 0.29 -0.7
274,539 - GFF281 0.29 +0.7
274,539 - GFF281 0.29 -0.6
274,579 + GFF281 0.38 -0.7
274,596 - GFF281 0.42 -0.0
274,626 + GFF281 0.49 -1.0
274,636 + GFF281 0.51 +0.5
274,639 - GFF281 0.51 +1.1
274,639 - GFF281 0.51 -0.4
274,647 + GFF281 0.53 +0.6
274,647 + GFF281 0.53 +0.5
274,655 - GFF281 0.55 +0.3
274,691 - GFF281 0.63 +1.0
274,717 + GFF281 0.69 +0.6
274,720 - GFF281 0.69 -0.9
274,720 - GFF281 0.69 -0.5
274,746 + GFF281 0.75 -2.2
274,746 + GFF281 0.75 -1.1
274,746 + GFF281 0.75 -0.5
274,746 + GFF281 0.75 -0.1
274,746 + GFF281 0.75 +0.7
274,754 - GFF281 0.77 -0.6
274,754 - GFF281 0.77 -2.5
274,754 - GFF281 0.77 -0.2
274,754 - GFF281 0.77 +0.4
274,754 - GFF281 0.77 +0.3
274,754 - GFF281 0.77 -0.0
274,756 - GFF281 0.77 -1.3
274,769 + GFF281 0.80 +0.4
274,769 - GFF281 0.80 +1.0
274,775 - GFF281 0.81 -0.3
274,777 - GFF281 0.82 +0.5
274,778 + GFF281 0.82 +1.2
274,778 + GFF281 0.82 +0.9
274,788 + GFF281 0.84 +0.5
274,788 + GFF281 0.84 +0.1
274,788 + GFF281 0.84 +0.0
274,788 + GFF281 0.84 +0.9
274,788 + GFF281 0.84 +1.7
274,788 + GFF281 0.84 +0.0
274,788 + GFF281 0.84 +1.2
274,788 + GFF281 0.84 +1.6
274,788 + GFF281 0.84 -0.4
274,788 + GFF281 0.84 -0.4
274,788 + GFF281 0.84 +0.5
274,788 + GFF281 0.84 +0.4
274,788 + GFF281 0.84 +0.4
274,788 + GFF281 0.84 -0.0
274,788 + GFF281 0.84 -0.5
274,788 + GFF281 0.84 -0.5
274,792 - GFF281 0.85 -1.1
274,794 - GFF281 0.86 +0.1
274,796 - GFF281 0.86 +0.9
274,796 - GFF281 0.86 -0.3
274,796 - GFF281 0.86 +0.7
274,796 - GFF281 0.86 -0.0
274,796 - GFF281 0.86 -0.0
274,796 - GFF281 0.86 -1.6
274,796 - GFF281 0.86 +0.3
274,796 - GFF281 0.86 +0.6
274,796 - GFF281 0.86 -0.3
274,796 - GFF281 0.86 -1.5
274,798 + GFF281 0.87 +0.6
274,801 - GFF281 0.87 +0.3
274,802 - GFF281 0.87 -0.5
274,806 - GFF281 0.88 +0.7
274,806 - GFF281 0.88 -0.2
274,830 - -1.0
274,867 - -2.4
274,882 - -1.0
274,993 + GFF282 0.22 -0.7
274,993 + GFF282 0.22 -0.0
275,050 + GFF282 0.38 -2.2
275,050 + GFF282 0.38 -0.9
275,058 - GFF282 0.40 +0.9
275,058 - GFF282 0.40 -1.7
275,058 - GFF282 0.40 -2.4
275,104 + GFF282 0.53 -1.4
275,104 + GFF282 0.53 -1.3
275,112 - GFF282 0.55 +0.7
275,170 - GFF282 0.71 +0.6
275,244 - -1.5
275,343 - -1.2
275,362 + -1.3
275,370 - +0.9
275,417 + +0.9
275,419 + +0.7
275,422 + +1.3
275,461 - -0.8
275,461 - -1.1
275,469 - -0.9
275,610 + -1.2
275,610 + -1.0
275,610 + -0.9
275,665 + -0.9
275,665 + -0.7
275,665 + -1.0
275,670 + -0.9
275,673 - +0.1
275,687 - -1.0
275,690 + -1.0
275,694 + -2.2
275,698 - -1.6
275,710 + +0.9
275,724 + +0.7
275,724 + -1.9
275,732 - -0.1
275,732 - +1.7
275,732 - +0.7
275,748 + -0.9
275,781 - -0.9
275,781 - +2.6
275,781 - +0.1
275,788 + +1.6
275,802 + -0.8
275,804 + -0.3
275,810 - -2.4
275,810 - -0.6
275,812 - +1.1
275,812 - -0.2
275,824 + -0.8
275,824 + +1.3
275,824 + -0.0
275,824 + -1.7
275,824 + -1.0
275,829 + +0.2
275,829 + -0.6
275,829 + -0.5
275,829 + -0.3
275,829 + -0.3
275,829 + -0.5
275,829 + -0.0
275,829 + -0.9
275,832 - -0.9
275,832 - -0.7
275,837 - +0.6
275,837 - +0.3
275,837 - -0.1
275,837 - -1.3
275,837 - +0.3
275,842 - -1.4
275,860 + -1.9
275,863 - GFF283 0.10 -0.0
275,868 - GFF283 0.10 -1.9
275,868 - GFF283 0.10 +1.0
275,868 - GFF283 0.10 -0.6
275,872 + GFF283 0.10 -1.5
275,872 + GFF283 0.10 +0.2
275,880 - GFF283 0.11 +1.0
275,880 - GFF283 0.11 -0.9
275,895 + GFF283 0.11 -0.4
275,895 + GFF283 0.11 +0.1
275,898 - GFF283 0.11 +0.3
275,903 - GFF283 0.11 -0.5
275,903 - GFF283 0.11 -0.5
275,903 - GFF283 0.11 +0.3
275,903 - GFF283 0.11 +0.3
275,903 - GFF283 0.11 +0.8
275,903 - GFF283 0.11 -0.3
275,903 - GFF283 0.11 +0.8
275,908 - GFF283 0.11 -1.7
275,924 - GFF283 0.12 -0.9
275,924 - GFF283 0.12 -0.4
275,929 + GFF283 0.12 -0.3
275,937 - GFF283 0.12 -1.5
275,944 + GFF283 0.13 -0.0
275,945 - GFF283 0.13 +0.0
275,946 + GFF283 0.13 +0.4
275,950 - GFF283 0.13 +0.5
275,954 - GFF283 0.13 +0.2
275,973 - GFF283 0.13 +0.0
275,980 + GFF283 0.14 -0.8
275,983 - GFF283 0.14 -0.6
276,013 + GFF283 0.15 +1.1
276,019 + GFF283 0.15 -1.3
276,019 + GFF283 0.15 +0.3
276,019 + GFF283 0.15 -1.0
276,019 + GFF283 0.15 -0.4
276,019 + GFF283 0.15 +0.3
276,019 + GFF283 0.15 -1.8
276,019 + GFF283 0.15 -2.2
276,027 - GFF283 0.15 +1.5
276,027 - GFF283 0.15 +0.3
276,028 + GFF283 0.15 +0.2
276,033 + GFF283 0.15 -0.2
276,033 + GFF283 0.15 -0.3
276,041 - GFF283 0.16 +0.4
276,050 + GFF283 0.16 -0.5
276,051 + GFF283 0.16 -0.7
276,058 + GFF283 0.16 -0.7
276,058 + GFF283 0.16 +0.1
276,058 + GFF283 0.16 -0.1
276,058 + GFF283 0.16 -0.3
276,066 - GFF283 0.16 +1.2
276,066 - GFF283 0.16 +1.5
276,066 - GFF283 0.16 +0.6
276,066 - GFF283 0.16 +1.5
276,072 - GFF283 0.17 -0.8
276,073 - GFF283 0.17 +1.6
276,084 + GFF283 0.17 +0.9
276,084 - GFF283 0.17 +0.5
276,104 + GFF283 0.17 -0.3
276,112 - GFF283 0.18 -1.2
276,166 - GFF283 0.19 -0.7
276,172 + GFF283 0.20 -1.2
276,172 + GFF283 0.20 +0.7
276,172 + GFF283 0.20 -0.1
276,180 - GFF283 0.20 +0.9
276,181 + GFF283 0.20 -0.7
276,182 + GFF283 0.20 -0.6
276,199 - GFF283 0.20 -0.3
276,238 - GFF283 0.22 +0.2
276,258 - GFF283 0.22 +1.5
276,264 - GFF283 0.22 +0.0
276,266 - GFF283 0.22 -0.8

Or see this region's nucleotide sequence