Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF268 and GFF269 are separated by 645 nucleotides
GFF268 - hypothetical protein, at 264,078 to 264,533
GFF268
GFF269 - hypothetical protein, at 265,179 to 265,736
GFF269
Position (kb) 265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.187 kb on - strand, within GFF268 at 264.213 kb on + strand, within GFF268 at 264.275 kb on - strand, within GFF268 at 264.286 kb on + strand, within GFF268 at 264.294 kb on - strand, within GFF268 at 264.308 kb on + strand, within GFF268 at 264.374 kb on + strand, within GFF268 at 264.421 kb on + strand, within GFF268 at 264.421 kb on + strand, within GFF268 at 264.426 kb on + strand, within GFF268 at 264.429 kb on - strand, within GFF268 at 264.436 kb on + strand, within GFF268 at 264.497 kb on + strand at 264.535 kb on + strand at 264.577 kb on - strand at 264.656 kb on + strand at 264.656 kb on + strand at 264.676 kb on + strand at 264.821 kb on + strand at 264.870 kb on + strand at 264.933 kb on - strand at 264.938 kb on + strand at 264.938 kb on + strand at 264.946 kb on - strand at 264.946 kb on - strand at 264.958 kb on + strand at 264.958 kb on + strand at 264.966 kb on - strand at 264.966 kb on - strand at 264.966 kb on - strand at 264.966 kb on - strand at 264.966 kb on - strand at 264.966 kb on - strand at 265.011 kb on + strand at 265.036 kb on - strand at 265.038 kb on + strand at 265.046 kb on - strand at 265.068 kb on - strand at 265.071 kb on + strand at 265.078 kb on - strand at 265.089 kb on - strand at 265.092 kb on + strand at 265.202 kb on + strand at 265.202 kb on + strand at 265.202 kb on + strand at 265.209 kb on + strand at 265.209 kb on + strand at 265.217 kb on - strand at 265.246 kb on + strand, within GFF269 at 265.246 kb on - strand, within GFF269 at 265.249 kb on + strand, within GFF269 at 265.256 kb on - strand, within GFF269 at 265.256 kb on - strand, within GFF269 at 265.287 kb on + strand, within GFF269 at 265.287 kb on + strand, within GFF269 at 265.288 kb on + strand, within GFF269 at 265.288 kb on + strand, within GFF269 at 265.288 kb on + strand, within GFF269 at 265.289 kb on + strand, within GFF269 at 265.289 kb on + strand, within GFF269 at 265.295 kb on - strand, within GFF269 at 265.295 kb on - strand, within GFF269 at 265.297 kb on + strand, within GFF269 at 265.299 kb on + strand, within GFF269 at 265.300 kb on - strand, within GFF269 at 265.311 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.321 kb on + strand, within GFF269 at 265.324 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.329 kb on - strand, within GFF269 at 265.338 kb on - strand, within GFF269 at 265.338 kb on - strand, within GFF269 at 265.338 kb on - strand, within GFF269 at 265.338 kb on - strand, within GFF269 at 265.341 kb on + strand, within GFF269 at 265.387 kb on - strand, within GFF269 at 265.387 kb on - strand, within GFF269 at 265.419 kb on + strand, within GFF269 at 265.419 kb on + strand, within GFF269 at 265.427 kb on - strand, within GFF269 at 265.433 kb on - strand, within GFF269 at 265.451 kb on + strand, within GFF269 at 265.451 kb on + strand, within GFF269 at 265.452 kb on - strand, within GFF269 at 265.469 kb on - strand, within GFF269 at 265.472 kb on + strand, within GFF269 at 265.522 kb on + strand, within GFF269 at 265.536 kb on - strand, within GFF269 at 265.538 kb on + strand, within GFF269 at 265.539 kb on + strand, within GFF269 at 265.539 kb on + strand, within GFF269 at 265.578 kb on + strand, within GFF269 at 265.583 kb on + strand, within GFF269 at 265.583 kb on + strand, within GFF269 at 265.591 kb on - strand, within GFF269 at 265.591 kb on - strand, within GFF269 at 265.595 kb on + strand, within GFF269 at 265.603 kb on - strand, within GFF269 at 265.607 kb on + strand, within GFF269 at 265.620 kb on - strand, within GFF269 at 265.627 kb on - strand, within GFF269 at 265.633 kb on - strand, within GFF269 at 265.648 kb on - strand, within GFF269 at 265.671 kb on - strand, within GFF269 at 265.681 kb on - strand at 265.682 kb on + strand at 265.695 kb on + strand at 265.697 kb on + strand at 265.697 kb on + strand at 265.697 kb on + strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.705 kb on - strand at 265.708 kb on + strand at 265.716 kb on - strand at 265.716 kb on - strand at 265.740 kb on - strand at 265.757 kb on - strand at 265.879 kb on + strand at 265.879 kb on + strand at 265.879 kb on + strand at 265.879 kb on + strand at 265.887 kb on - strand at 265.887 kb on - strand at 265.937 kb on - strand at 265.974 kb on + strand at 265.974 kb on + strand at 265.982 kb on - strand at 265.982 kb on - strand at 266.021 kb on + strand at 266.026 kb on + strand at 266.058 kb on + strand at 266.058 kb on + strand at 266.058 kb on + strand at 266.058 kb on + strand at 266.066 kb on - strand at 266.066 kb on - strand at 266.066 kb on - strand at 266.163 kb on - strand at 266.163 kb on - strand at 266.163 kb on - strand at 266.163 kb on - strand at 266.165 kb on - strand at 266.250 kb on - strand at 266.305 kb on - strand at 266.393 kb on - strand at 266.393 kb on - strand at 266.393 kb on - strand at 266.393 kb on - strand at 266.393 kb on - strand at 266.540 kb on + strand at 266.540 kb on - strand at 266.559 kb on - strand at 266.615 kb on + strand at 266.664 kb on + strand at 266.665 kb on + strand at 266.669 kb on + strand at 266.674 kb on + strand at 266.674 kb on + strand at 266.679 kb on + strand at 266.679 kb on + strand at 266.679 kb on + strand at 266.682 kb on - strand at 266.687 kb on - strand at 266.687 kb on - strand at 266.694 kb on + strand at 266.694 kb on - strand at 266.696 kb on + strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.704 kb on - strand at 266.709 kb on + strand at 266.717 kb on - strand at 266.717 kb on - strand at 266.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 264,187 - GFF268 0.24 +0.1 264,213 + GFF268 0.30 -0.4 264,275 - GFF268 0.43 -0.6 264,286 + GFF268 0.46 +0.6 264,294 - GFF268 0.47 -1.6 264,308 + GFF268 0.50 +1.0 264,374 + GFF268 0.65 -0.3 264,421 + GFF268 0.75 +1.5 264,421 + GFF268 0.75 +0.7 264,426 + GFF268 0.76 +1.4 264,429 - GFF268 0.77 -0.1 264,436 + GFF268 0.79 +0.4 264,497 + +2.3 264,535 + -0.4 264,577 - -0.9 264,656 + +0.5 264,656 + +0.4 264,676 + +0.9 264,821 + +1.2 264,870 + +0.9 264,933 - -0.1 264,938 + -0.0 264,938 + -1.2 264,946 - -0.0 264,946 - -0.2 264,958 + -0.5 264,958 + +0.0 264,966 - +0.6 264,966 - +0.5 264,966 - +0.2 264,966 - -0.5 264,966 - -0.5 264,966 - +0.1 265,011 + -2.6 265,036 - +1.1 265,038 + +0.3 265,046 - +0.1 265,068 - -0.1 265,071 + +0.7 265,078 - -0.5 265,089 - -0.4 265,092 + +1.2 265,202 + +0.8 265,202 + +0.5 265,202 + -0.4 265,209 + +1.8 265,209 + -0.3 265,217 - +1.0 265,246 + GFF269 0.12 -0.3 265,246 - GFF269 0.12 -0.2 265,249 + GFF269 0.13 +0.8 265,256 - GFF269 0.14 -0.7 265,256 - GFF269 0.14 -0.2 265,287 + GFF269 0.19 +1.3 265,287 + GFF269 0.19 -2.2 265,288 + GFF269 0.20 +1.1 265,288 + GFF269 0.20 +0.4 265,288 + GFF269 0.20 -0.0 265,289 + GFF269 0.20 -0.1 265,289 + GFF269 0.20 -0.1 265,295 - GFF269 0.21 +0.8 265,295 - GFF269 0.21 +1.1 265,297 + GFF269 0.21 +0.7 265,299 + GFF269 0.22 +0.8 265,300 - GFF269 0.22 +1.5 265,311 + GFF269 0.24 +0.4 265,321 + GFF269 0.25 -0.4 265,321 + GFF269 0.25 -1.6 265,321 + GFF269 0.25 +1.1 265,321 + GFF269 0.25 -0.4 265,321 + GFF269 0.25 -1.5 265,321 + GFF269 0.25 +0.5 265,321 + GFF269 0.25 +1.1 265,324 - GFF269 0.26 -0.9 265,329 - GFF269 0.27 -1.4 265,329 - GFF269 0.27 -1.7 265,329 - GFF269 0.27 -0.6 265,329 - GFF269 0.27 +0.4 265,329 - GFF269 0.27 +0.1 265,329 - GFF269 0.27 -1.3 265,329 - GFF269 0.27 -0.5 265,329 - GFF269 0.27 -0.2 265,338 - GFF269 0.28 +0.5 265,338 - GFF269 0.28 -1.3 265,338 - GFF269 0.28 -0.1 265,338 - GFF269 0.28 +0.4 265,341 + GFF269 0.29 -0.7 265,387 - GFF269 0.37 -1.9 265,387 - GFF269 0.37 -1.5 265,419 + GFF269 0.43 +0.1 265,419 + GFF269 0.43 -0.1 265,427 - GFF269 0.44 -0.5 265,433 - GFF269 0.46 -1.7 265,451 + GFF269 0.49 +0.7 265,451 + GFF269 0.49 +0.9 265,452 - GFF269 0.49 -2.5 265,469 - GFF269 0.52 -0.7 265,472 + GFF269 0.53 -0.3 265,522 + GFF269 0.61 -0.2 265,536 - GFF269 0.64 -1.3 265,538 + GFF269 0.64 +1.5 265,539 + GFF269 0.65 -0.2 265,539 + GFF269 0.65 -0.5 265,578 + GFF269 0.72 -1.7 265,583 + GFF269 0.72 -0.0 265,583 + GFF269 0.72 +0.4 265,591 - GFF269 0.74 -0.7 265,591 - GFF269 0.74 +0.8 265,595 + GFF269 0.75 +1.2 265,603 - GFF269 0.76 +0.4 265,607 + GFF269 0.77 -0.5 265,620 - GFF269 0.79 -0.4 265,627 - GFF269 0.80 +1.8 265,633 - GFF269 0.81 -1.6 265,648 - GFF269 0.84 +0.3 265,671 - GFF269 0.88 -1.2 265,681 - +1.1 265,682 + -0.3 265,695 + +0.6 265,697 + +0.2 265,697 + -0.0 265,697 + -2.2 265,705 - -0.2 265,705 - -1.7 265,705 - -0.5 265,705 - -0.1 265,705 - +0.4 265,705 - +0.1 265,705 - -0.2 265,708 + -0.1 265,716 - -1.5 265,716 - +0.7 265,740 - -0.6 265,757 - +0.6 265,879 + -0.8 265,879 + -0.5 265,879 + +1.5 265,879 + -0.1 265,887 - -2.6 265,887 - -0.1 265,937 - -1.2 265,974 + +0.4 265,974 + +0.2 265,982 - -0.5 265,982 - -0.1 266,021 + +0.5 266,026 + +0.7 266,058 + -1.6 266,058 + -0.5 266,058 + -0.3 266,058 + -0.5 266,066 - +0.8 266,066 - -1.2 266,066 - +0.3 266,163 - -0.2 266,163 - -1.2 266,163 - +0.5 266,163 - -0.0 266,165 - +1.3 266,250 - +2.1 266,305 - -0.6 266,393 - +0.0 266,393 - +0.6 266,393 - +0.3 266,393 - -0.7 266,393 - -0.5 266,540 + -2.5 266,540 - -0.1 266,559 - +1.5 266,615 + -0.9 266,664 + +0.5 266,665 + +0.7 266,669 + +1.0 266,674 + +1.9 266,674 + +1.1 266,679 + +0.7 266,679 + +1.2 266,679 + -0.5 266,682 - -1.0 266,687 - +0.4 266,687 - -0.1 266,694 + +1.3 266,694 - +0.6 266,696 + +0.1 266,702 - -1.7 266,702 - +0.2 266,702 - -0.0 266,704 - -0.1 266,709 + -0.2 266,717 - -1.4 266,717 - -1.7 266,723 - +0.8
Or see this region's nucleotide sequence