Strain Fitness in Sphingobium sp. HT1-2 around GFF2635

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,652,895	+		GFF2634	0.67	+0.3
2,652,929	+		GFF2634	0.69	+0.8
2,652,970	+		GFF2634	0.71	-0.3
2,652,979	+		GFF2634	0.72	-0.6
2,653,004	+		GFF2634	0.73	+0.8
2,653,085	+		GFF2634	0.78	+0.1
2,653,090	+		GFF2634	0.78	+0.2
2,653,090	+		GFF2634	0.78	-2.2
2,653,098	-		GFF2634	0.78	+0.9
2,653,121	+		GFF2634	0.80	+1.6
2,653,121	+		GFF2634	0.80	+0.6
2,653,121	+		GFF2634	0.80	+0.2
2,653,121	+		GFF2634	0.80	-0.5
2,653,129	-		GFF2634	0.80	+0.1
2,653,129	-		GFF2634	0.80	-0.6
2,653,129	-		GFF2634	0.80	-0.4
2,653,129	-		GFF2634	0.80	-0.0
2,653,129	-		GFF2634	0.80	-0.5
2,653,145	+		GFF2634	0.81	-0.9
2,653,147	-		GFF2634	0.81	+0.7
2,653,164	+		GFF2634	0.82	-0.6
2,653,169	+		GFF2634	0.82	-0.4
2,653,169	+		GFF2634	0.82	+0.4
2,653,184	+		GFF2634	0.83	-1.3
2,653,191	-		GFF2634	0.83	+0.1
2,653,196	-		GFF2634	0.84	-0.3
2,653,222	-		GFF2634	0.85	+0.5
2,653,227	-		GFF2634	0.85	-1.6
2,653,247	-		GFF2634	0.87	+0.2
2,653,273	+		GFF2634	0.88	+0.6
2,653,273	+		GFF2634	0.88	-1.1
2,653,273	+		GFF2634	0.88	-0.4
2,653,273	+		GFF2634	0.88	-0.1
2,653,281	-		GFF2634	0.88	-0.1
2,653,281	-		GFF2634	0.88	+0.1
2,653,281	-		GFF2634	0.88	+0.0
2,653,297	+		GFF2634	0.89	+0.0
2,653,309	+		GFF2634	0.90	-2.3
2,653,314	+				+0.1
2,653,317	-				-1.1
2,653,319	+				-0.4
2,653,322	-				-1.8
2,653,322	-				+0.1
2,653,322	-				+1.0
2,653,337	+				+0.7
2,653,337	+				-0.5
2,653,337	+				-0.7
2,653,339	+				-0.3
2,653,347	-				+0.1
2,653,347	-				-0.6
2,653,347	-				-0.7
2,653,351	+				-0.6
2,653,370	+				+0.8
2,653,399	+				+0.2
2,653,399	+				+1.6
2,653,407	-				+0.1
2,653,409	+				-2.3
2,653,417	-				+0.4
2,653,417	-				+0.0
2,653,432	+				-0.5
2,653,432	+				-0.0
2,653,458	-				+0.7
2,653,506	-				-1.1
2,653,543	+				+0.2
2,653,543	+				-0.1
2,653,543	+				-0.6
2,653,551	+				-1.5
2,653,575	+				+0.6
2,653,575	+				+1.4
2,653,575	+				-0.2
2,653,585	-				-0.5
2,653,585	-				+0.5
2,653,592	+				+0.5
2,653,623	+				+0.8
2,653,631	-				-0.1
2,653,667	-				-0.4
2,653,796	-				-1.2
2,653,812	+				+0.3
2,653,820	+				-0.6
2,653,832	+				+0.0
2,653,842	+				+0.2
2,653,850	-				-1.6
2,653,923	+				-0.9
2,653,946	+				+0.2
2,653,946	+				+1.2
2,653,946	+				-1.2
2,653,954	-				-0.3
2,653,955	-				+1.2
2,653,980	+				-2.2
2,653,980	+				-0.2
2,653,980	+				-0.5
2,653,980	+				-2.5
2,653,980	+				-0.0
2,653,980	+				-0.8
2,653,980	+				+0.9
2,653,980	+				+0.5
2,653,980	+				+1.2
2,653,980	+				+0.3
2,653,980	+				+1.2
2,653,980	+				+1.8
2,653,988	-		GFF2635	0.10	-0.2
2,653,988	-		GFF2635	0.10	+1.4
2,653,988	-		GFF2635	0.10	+1.3
2,653,988	-		GFF2635	0.10	-0.4
2,653,988	-		GFF2635	0.10	-1.0
2,653,988	-		GFF2635	0.10	-1.0
2,653,994	-		GFF2635	0.11	+1.3
2,653,999	-		GFF2635	0.11	+0.5
2,653,999	-		GFF2635	0.11	+0.6
2,654,037	+		GFF2635	0.13	-0.3
2,654,037	+		GFF2635	0.13	-1.7
2,654,037	+		GFF2635	0.13	+0.5
2,654,045	-		GFF2635	0.14	+0.1
2,654,047	-		GFF2635	0.14	-0.0
2,654,069	+		GFF2635	0.15	-0.9
2,654,073	-		GFF2635	0.16	+1.5
2,654,077	-		GFF2635	0.16	-1.1
2,654,119	-		GFF2635	0.19	+0.2
2,654,121	+		GFF2635	0.19	+0.7
2,654,121	+		GFF2635	0.19	+0.3
2,654,121	+		GFF2635	0.19	+0.7
2,654,121	+		GFF2635	0.19	-0.4
2,654,129	+		GFF2635	0.19	+1.2
2,654,166	-		GFF2635	0.22	-1.5
2,654,170	-		GFF2635	0.22	-0.4
2,654,185	-		GFF2635	0.23	-0.4
2,654,185	-		GFF2635	0.23	-1.2
2,654,194	-		GFF2635	0.23	-1.1
2,654,194	-		GFF2635	0.23	+0.3
2,654,215	-		GFF2635	0.25	-1.1
2,654,245	+		GFF2635	0.26	-0.5
2,654,253	-		GFF2635	0.27	+0.5
2,654,257	-		GFF2635	0.27	+0.3
2,654,274	+		GFF2635	0.28	-3.1
2,654,293	+		GFF2635	0.30	+0.1
2,654,293	+		GFF2635	0.30	+0.1
2,654,303	+		GFF2635	0.30	-1.6
2,654,303	+		GFF2635	0.30	+0.4
2,654,311	-		GFF2635	0.31	+0.6
2,654,370	+		GFF2635	0.34	+0.8
2,654,370	+		GFF2635	0.34	-1.6
2,654,380	+		GFF2635	0.35	-0.6
2,654,388	+		GFF2635	0.35	-0.3
2,654,388	-		GFF2635	0.35	+0.1
2,654,388	-		GFF2635	0.35	+0.4
2,654,390	+		GFF2635	0.36	-0.4
2,654,390	+		GFF2635	0.36	-1.4
2,654,390	+		GFF2635	0.36	-1.2
2,654,390	+		GFF2635	0.36	+0.1
2,654,398	-		GFF2635	0.36	-0.2
2,654,398	-		GFF2635	0.36	+0.3
2,654,398	-		GFF2635	0.36	-1.2
2,654,398	-		GFF2635	0.36	-1.2
2,654,411	+		GFF2635	0.37	+0.3
2,654,411	+		GFF2635	0.37	-0.5
2,654,419	-		GFF2635	0.37	-2.7
2,654,421	+		GFF2635	0.38	+1.6
2,654,472	+		GFF2635	0.41	+0.3
2,654,472	+		GFF2635	0.41	-0.0
2,654,478	+		GFF2635	0.41	-1.3
2,654,501	+		GFF2635	0.43	+1.3
2,654,504	+		GFF2635	0.43	-1.3
2,654,504	+		GFF2635	0.43	+0.3
2,654,504	+		GFF2635	0.43	+0.6
2,654,553	-		GFF2635	0.46	+0.6
2,654,562	+		GFF2635	0.46	+1.1
2,654,570	-		GFF2635	0.47	+0.5
2,654,573	-		GFF2635	0.47	+1.7
2,654,605	-		GFF2635	0.49	+0.8
2,654,605	-		GFF2635	0.49	-0.5
2,654,619	-		GFF2635	0.50	+0.2
2,654,662	+		GFF2635	0.53	+0.2
2,654,667	+		GFF2635	0.53	-0.9
2,654,685	+		GFF2635	0.54	-0.3
2,654,693	-		GFF2635	0.55	+0.4
2,654,695	+		GFF2635	0.55	-0.1
2,654,695	-		GFF2635	0.55	+0.3
2,654,697	+		GFF2635	0.55	+0.4
2,654,717	+		GFF2635	0.56	-0.6
2,654,730	+		GFF2635	0.57	-1.3
2,654,730	+		GFF2635	0.57	+0.0
2,654,738	-		GFF2635	0.57	-0.4
2,654,738	-		GFF2635	0.57	+1.0
2,654,852	+		GFF2635	0.65	+0.4
2,654,938	+		GFF2635	0.70	+0.2
2,654,979	+		GFF2635	0.73	+0.8
2,654,989	+		GFF2635	0.73	+1.1
2,655,007	+		GFF2635	0.74	-0.5
2,655,010	+		GFF2635	0.75	-0.4
2,655,015	+		GFF2635	0.75	-1.7
2,655,017	+		GFF2635	0.75	-0.2
2,655,017	+		GFF2635	0.75	+0.0
2,655,018	+		GFF2635	0.75	-1.2
2,655,018	+		GFF2635	0.75	+0.4
2,655,018	+		GFF2635	0.75	-0.7
2,655,018	+		GFF2635	0.75	-1.5
2,655,018	+		GFF2635	0.75	-0.0
2,655,018	+		GFF2635	0.75	-0.9
2,655,018	+		GFF2635	0.75	-0.2
2,655,018	+		GFF2635	0.75	-0.0
2,655,025	+		GFF2635	0.75	+1.2
2,655,025	-		GFF2635	0.75	+0.3
2,655,025	-		GFF2635	0.75	-0.3
2,655,025	-		GFF2635	0.75	+0.1
2,655,025	-		GFF2635	0.75	+0.1
2,655,025	-		GFF2635	0.75	+0.5
2,655,026	-		GFF2635	0.76	-0.1
2,655,026	-		GFF2635	0.76	-0.7
2,655,026	-		GFF2635	0.76	+0.1
2,655,026	-		GFF2635	0.76	-0.3
2,655,026	-		GFF2635	0.76	-0.4
2,655,026	-		GFF2635	0.76	-0.8
2,655,026	-		GFF2635	0.76	+1.0
2,655,026	-		GFF2635	0.76	-0.9
2,655,026	-		GFF2635	0.76	+0.4
2,655,026	-		GFF2635	0.76	-1.2
2,655,026	-		GFF2635	0.76	+0.9
2,655,035	-		GFF2635	0.76	+0.5
2,655,103	-		GFF2635	0.80	+0.7
2,655,103	-		GFF2635	0.80	+1.6
2,655,124	+		GFF2635	0.82	-0.0
2,655,137	+		GFF2635	0.82	-2.8
2,655,147	-		GFF2635	0.83	+1.1
2,655,164	-		GFF2635	0.84	-0.2
2,655,217	+		GFF2635	0.88	-0.9
2,655,225	-		GFF2635	0.88	-1.7
2,655,252	+		GFF2635	0.90	-0.1
2,655,290	+				+1.2
2,655,290	+				-0.1
2,655,323	+				-0.6
2,655,343	+				+0.1
2,655,357	+				-0.4
2,655,367	+				-1.9
2,655,369	+				-0.2
2,655,375	-				-2.2
2,655,377	-				-0.3
2,655,387	+				+0.3
2,655,389	-				+0.2
2,655,425	+				-0.6
2,655,426	-				-0.3
2,655,433	-				-1.0
2,655,441	-				-0.5
2,655,574	-				+0.1
2,655,612	+				-0.4
2,655,620	-				+1.3
2,655,623	+				+0.3
2,655,626	-				+1.4
2,655,628	+				+0.0
2,655,667	+				+0.6
2,655,682	+				+0.3
2,655,690	-				-0.8
2,655,690	-				+1.3
2,655,744	+		GFF2636	0.13	+0.9
2,655,754	+		GFF2636	0.14	+0.1
2,655,762	-		GFF2636	0.14	-0.0
2,655,777	+		GFF2636	0.15	-0.6
2,655,796	+		GFF2636	0.17	+0.2
2,655,815	+		GFF2636	0.18	-1.1
2,655,879	-		GFF2636	0.23	-1.2
2,655,904	+		GFF2636	0.24	+0.1
2,655,912	-		GFF2636	0.25	+0.4
2,655,917	-		GFF2636	0.25	+0.4
2,655,954	-		GFF2636	0.28	-2.1
2,655,972	-		GFF2636	0.29	-1.3
2,655,981	-		GFF2636	0.30	-2.3
2,656,021	+		GFF2636	0.33	+0.1
2,656,037	-		GFF2636	0.34	+0.5
2,656,047	+		GFF2636	0.35	+0.6
2,656,078	+		GFF2636	0.37	+0.6
2,656,078	+		GFF2636	0.37	+0.9
2,656,080	-		GFF2636	0.37	-0.5
2,656,088	+		GFF2636	0.38	-1.0
2,656,091	-		GFF2636	0.38	-0.5
2,656,096	-		GFF2636	0.38	+0.1
2,656,096	-		GFF2636	0.38	+0.3
2,656,102	+		GFF2636	0.39	-0.9
2,656,103	+		GFF2636	0.39	+1.0
2,656,110	-		GFF2636	0.39	-0.4
2,656,147	+		GFF2636	0.42	-0.3
2,656,208	+		GFF2636	0.46	-1.8
2,656,208	+		GFF2636	0.46	-0.6
2,656,208	+		GFF2636	0.46	+1.2
2,656,209	-		GFF2636	0.46	+1.2
2,656,216	-		GFF2636	0.47	-1.8
2,656,216	-		GFF2636	0.47	-0.1
2,656,254	-		GFF2636	0.49	-0.6
2,656,264	-		GFF2636	0.50	-0.9
2,656,265	-		GFF2636	0.50	+0.5
2,656,265	-		GFF2636	0.50	-0.6
2,656,288	+		GFF2636	0.52	-1.3
2,656,296	-		GFF2636	0.52	-0.3
2,656,296	-		GFF2636	0.52	-0.9
2,656,296	-		GFF2636	0.52	-0.4
2,656,296	-		GFF2636	0.52	-0.7
2,656,296	-		GFF2636	0.52	-0.5
2,656,296	-		GFF2636	0.52	-1.4
2,656,296	-		GFF2636	0.52	-0.6
2,656,296	-		GFF2636	0.52	+0.4
2,656,296	-		GFF2636	0.52	-0.3
2,656,296	-		GFF2636	0.52	-0.7
2,656,375	+		GFF2636	0.58	-1.4
2,656,383	-		GFF2636	0.59	+0.5
2,656,386	-		GFF2636	0.59	+0.6
2,656,400	+		GFF2636	0.60	-1.3
2,656,400	+		GFF2636	0.60	-1.4