Strain Fitness in Sphingobium sp. HT1-2 around GFF2611

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,631,640	-		GFF2610	0.58	-0.4
2,631,659	+		GFF2610	0.58	+0.1
2,631,685	+		GFF2610	0.60	-2.7
2,631,698	+		GFF2610	0.60	+0.6
2,631,698	+		GFF2610	0.60	+1.0
2,631,721	+		GFF2610	0.61	-1.5
2,631,721	+		GFF2610	0.61	-1.7
2,631,721	+		GFF2610	0.61	-0.3
2,631,721	+		GFF2610	0.61	-1.0
2,631,721	+		GFF2610	0.61	+0.2
2,631,734	-		GFF2610	0.62	+0.5
2,631,752	-		GFF2610	0.63	-0.8
2,631,795	+		GFF2610	0.65	-0.4
2,631,795	+		GFF2610	0.65	-0.2
2,631,797	+		GFF2610	0.65	+0.6
2,631,797	+		GFF2610	0.65	+0.3
2,631,797	+		GFF2610	0.65	+0.9
2,631,805	-		GFF2610	0.65	-1.9
2,631,814	+		GFF2610	0.66	-1.2
2,631,814	+		GFF2610	0.66	+0.7
2,631,814	+		GFF2610	0.66	+1.4
2,631,824	+		GFF2610	0.66	+0.3
2,631,824	+		GFF2610	0.66	-0.3
2,631,824	+		GFF2610	0.66	+0.1
2,631,824	+		GFF2610	0.66	-1.3
2,631,825	+		GFF2610	0.66	-0.8
2,631,832	-		GFF2610	0.66	+0.8
2,631,833	-		GFF2610	0.66	+0.5
2,631,852	-		GFF2610	0.67	-0.6
2,631,861	+		GFF2610	0.68	-0.0
2,631,869	-		GFF2610	0.68	+0.4
2,631,869	-		GFF2610	0.68	-0.4
2,631,869	-		GFF2610	0.68	+0.7
2,631,880	-		GFF2610	0.69	+0.1
2,631,886	+		GFF2610	0.69	+1.7
2,631,913	+		GFF2610	0.70	-0.0
2,631,937	+		GFF2610	0.71	+0.9
2,631,959	-		GFF2610	0.72	-0.7
2,631,973	+		GFF2610	0.73	-0.8
2,631,981	+		GFF2610	0.73	-0.9
2,631,981	-		GFF2610	0.73	-0.7
2,631,981	-		GFF2610	0.73	+1.1
2,631,995	+		GFF2610	0.74	+0.0
2,631,996	+		GFF2610	0.74	+1.5
2,632,046	-		GFF2610	0.76	-1.3
2,632,053	+		GFF2610	0.76	+1.0
2,632,058	+		GFF2610	0.77	-1.0
2,632,058	+		GFF2610	0.77	+0.5
2,632,058	+		GFF2610	0.77	+1.2
2,632,058	+		GFF2610	0.77	-0.3
2,632,058	+		GFF2610	0.77	-1.5
2,632,058	+		GFF2610	0.77	+0.4
2,632,058	+		GFF2610	0.77	-0.4
2,632,058	+		GFF2610	0.77	+1.0
2,632,066	-		GFF2610	0.77	-1.1
2,632,066	-		GFF2610	0.77	-1.7
2,632,066	-		GFF2610	0.77	-0.7
2,632,066	-		GFF2610	0.77	+0.3
2,632,066	-		GFF2610	0.77	-0.8
2,632,066	-		GFF2610	0.77	+1.0
2,632,066	-		GFF2610	0.77	-0.5
2,632,066	-		GFF2610	0.77	+0.1
2,632,066	-		GFF2610	0.77	+1.1
2,632,067	+		GFF2610	0.77	+0.0
2,632,067	+		GFF2610	0.77	+0.8
2,632,090	-		GFF2610	0.78	-0.6
2,632,090	-		GFF2610	0.78	+0.7
2,632,105	+		GFF2610	0.79	-0.3
2,632,144	+		GFF2610	0.81	-0.0
2,632,151	+		GFF2610	0.81	+0.7
2,632,152	-		GFF2610	0.81	-1.2
2,632,156	+		GFF2610	0.81	+0.1
2,632,170	-		GFF2610	0.82	-0.1
2,632,173	+		GFF2610	0.82	-0.2
2,632,181	-		GFF2610	0.82	+0.2
2,632,196	-		GFF2610	0.83	+0.3
2,632,227	+		GFF2610	0.84	-1.1
2,632,227	+		GFF2610	0.84	-2.3
2,632,235	-		GFF2610	0.85	-1.4
2,632,244	+		GFF2610	0.85	+0.9
2,632,244	+		GFF2610	0.85	+0.4
2,632,244	+		GFF2610	0.85	+0.7
2,632,245	-		GFF2610	0.85	-0.1
2,632,252	-		GFF2610	0.86	+0.2
2,632,267	-		GFF2610	0.86	-0.5
2,632,283	+		GFF2610	0.87	-1.5
2,632,310	+		GFF2610	0.88	+0.4
2,632,346	+		GFF2610	0.90	-1.4
2,632,386	-				+0.6
2,632,412	+				+0.1
2,632,444	+				-0.8
2,632,472	-				+0.6
2,632,491	+				-0.2
2,632,506	+				-0.7
2,632,535	+				-0.2
2,632,537	+				-0.2
2,632,537	+				+0.3
2,632,537	+				+0.1
2,632,542	+				-0.3
2,632,543	-				+0.7
2,632,543	-				-0.2
2,632,543	-				+0.0
2,632,544	-				-0.3
2,632,545	-				-0.7
2,632,547	+				-1.9
2,632,547	+				-1.0
2,632,547	+				-0.8
2,632,555	-				-0.2
2,632,555	-				+0.1
2,632,555	-				+0.2
2,632,562	+				+1.1
2,632,582	+				-0.5
2,632,582	+				-3.0
2,632,590	-				+0.6
2,632,602	+				-2.0
2,632,605	+				-0.1
2,632,605	+				-0.6
2,632,605	+				-1.7
2,632,610	-				-2.4
2,632,630	+				+2.1
2,632,647	-				-0.6
2,632,652	+				-1.7
2,632,660	-				-1.5
2,632,660	-				+0.3
2,632,666	-				+0.6
2,632,680	-				+0.3
2,632,689	+				-0.0
2,632,689	+				-0.4
2,632,689	+				-0.8
2,632,691	+				+0.2
2,632,694	+				+0.5
2,632,694	+				-0.3
2,632,694	+				-0.5
2,632,697	+				+0.2
2,632,697	-				-1.1
2,632,702	-				+0.5
2,632,702	-				-0.6
2,632,702	-				+1.0
2,632,702	-				-0.6
2,632,702	-				-0.1
2,632,702	-				-0.8
2,632,716	+				-0.7
2,632,719	-				+0.4
2,632,719	-				-0.3
2,632,721	+				-0.2
2,632,728	+				-1.8
2,632,729	-				+0.3
2,632,729	-				-1.9
2,632,729	-				-0.5
2,632,743	+		GFF2611	0.11	+0.0
2,632,751	-		GFF2611	0.12	-2.3
2,632,751	-		GFF2611	0.12	+0.4
2,632,753	-		GFF2611	0.12	+0.1
2,632,753	-		GFF2611	0.12	-1.7
2,632,764	+		GFF2611	0.13	+0.3
2,632,771	+		GFF2611	0.13	-0.2
2,632,771	+		GFF2611	0.13	-0.1
2,632,776	+		GFF2611	0.14	+0.1
2,632,776	+		GFF2611	0.14	+0.3
2,632,776	+		GFF2611	0.14	+0.2
2,632,776	+		GFF2611	0.14	-0.1
2,632,776	+		GFF2611	0.14	+0.7
2,632,776	+		GFF2611	0.14	-1.3
2,632,776	+		GFF2611	0.14	-0.7
2,632,777	-		GFF2611	0.14	-0.9
2,632,779	-		GFF2611	0.14	+0.9
2,632,779	-		GFF2611	0.14	+0.0
2,632,779	-		GFF2611	0.14	+1.5
2,632,781	+		GFF2611	0.14	-0.4
2,632,781	+		GFF2611	0.14	+0.4
2,632,784	-		GFF2611	0.14	-0.4
2,632,784	-		GFF2611	0.14	-0.1
2,632,784	-		GFF2611	0.14	+0.5
2,632,784	-		GFF2611	0.14	+0.1
2,632,784	-		GFF2611	0.14	-2.5
2,632,789	-		GFF2611	0.15	-1.9
2,632,789	-		GFF2611	0.15	-0.2
2,632,789	-		GFF2611	0.15	+0.0
2,632,789	-		GFF2611	0.15	+1.2
2,632,789	-		GFF2611	0.15	-0.3
2,632,801	-		GFF2611	0.16	+1.9
2,632,842	-		GFF2611	0.19	+0.1
2,632,852	-		GFF2611	0.20	-1.1
2,632,865	+		GFF2611	0.21	-0.9
2,632,865	+		GFF2611	0.21	+1.3
2,632,873	-		GFF2611	0.21	+0.6
2,632,873	-		GFF2611	0.21	-0.4
2,632,873	-		GFF2611	0.21	+0.0
2,632,873	-		GFF2611	0.21	-0.1
2,632,873	-		GFF2611	0.21	-0.3
2,632,873	-		GFF2611	0.21	+1.0
2,632,890	-		GFF2611	0.23	-1.5
2,632,915	-		GFF2611	0.25	+1.5
2,632,924	+		GFF2611	0.26	-1.4
2,632,926	+		GFF2611	0.26	-0.6
2,632,926	+		GFF2611	0.26	+1.3
2,632,931	+		GFF2611	0.26	-0.0
2,632,931	+		GFF2611	0.26	-0.3
2,632,932	+		GFF2611	0.26	-0.4
2,632,934	-		GFF2611	0.26	+0.5
2,632,934	-		GFF2611	0.26	+0.1
2,632,972	+		GFF2611	0.29	-0.1
2,632,972	+		GFF2611	0.29	+0.1
2,632,972	+		GFF2611	0.29	-0.9
2,632,972	+		GFF2611	0.29	-2.3
2,632,980	+		GFF2611	0.30	+1.3
2,632,980	-		GFF2611	0.30	-2.6
2,632,980	-		GFF2611	0.30	-0.8
2,632,980	-		GFF2611	0.30	+0.3
2,632,980	-		GFF2611	0.30	-0.0
2,632,980	-		GFF2611	0.30	-1.6
2,632,993	-		GFF2611	0.31	-0.6
2,633,001	+		GFF2611	0.32	-0.1
2,633,009	-		GFF2611	0.32	-1.5
2,633,014	-		GFF2611	0.33	-0.5
2,633,014	-		GFF2611	0.33	-0.1
2,633,040	-		GFF2611	0.35	+0.3
2,633,062	-		GFF2611	0.37	-0.6
2,633,081	-		GFF2611	0.38	-1.7
2,633,081	-		GFF2611	0.38	-0.2
2,633,082	+		GFF2611	0.38	-0.9
2,633,092	+		GFF2611	0.39	-2.4
2,633,100	-		GFF2611	0.40	-0.9
2,633,107	+		GFF2611	0.40	+0.5
2,633,112	+		GFF2611	0.41	+1.1
2,633,120	-		GFF2611	0.41	+0.2
2,633,132	-		GFF2611	0.42	+0.4
2,633,134	+		GFF2611	0.42	-0.1
2,633,134	+		GFF2611	0.42	-1.6
2,633,141	+		GFF2611	0.43	+0.7
2,633,158	+		GFF2611	0.44	-2.4
2,633,158	+		GFF2611	0.44	-0.2
2,633,166	-		GFF2611	0.45	-0.6
2,633,166	-		GFF2611	0.45	-1.3
2,633,166	-		GFF2611	0.45	+1.2
2,633,166	-		GFF2611	0.45	+0.3
2,633,166	-		GFF2611	0.45	-1.0
2,633,166	-		GFF2611	0.45	-0.6
2,633,166	-		GFF2611	0.45	-0.7
2,633,166	-		GFF2611	0.45	+0.9
2,633,166	-		GFF2611	0.45	-1.4
2,633,172	-		GFF2611	0.45	+0.7
2,633,190	+		GFF2611	0.47	+0.1
2,633,206	+		GFF2611	0.48	-0.3
2,633,208	-		GFF2611	0.48	-0.1
2,633,208	-		GFF2611	0.48	-0.2
2,633,209	-		GFF2611	0.48	+0.3
2,633,209	-		GFF2611	0.48	-0.8
2,633,241	-		GFF2611	0.51	-0.2
2,633,286	+		GFF2611	0.55	-0.3
2,633,286	+		GFF2611	0.55	-1.1
2,633,286	+		GFF2611	0.55	+0.3
2,633,301	-		GFF2611	0.56	+0.7
2,633,329	+		GFF2611	0.58	-1.7
2,633,346	+		GFF2611	0.60	-0.3
2,633,347	+		GFF2611	0.60	+0.3
2,633,351	+		GFF2611	0.60	-2.5
2,633,380	-		GFF2611	0.62	+1.1
2,633,390	+		GFF2611	0.63	-0.5
2,633,395	+		GFF2611	0.63	+0.3
2,633,414	-		GFF2611	0.65	-0.3
2,633,432	-		GFF2611	0.66	-1.1
2,633,436	+		GFF2611	0.67	+0.2
2,633,479	-		GFF2611	0.70	-1.3
2,633,484	+		GFF2611	0.71	-1.1
2,633,485	-		GFF2611	0.71	-1.3
2,633,492	-		GFF2611	0.71	-0.1
2,633,507	-		GFF2611	0.72	-1.1
2,633,510	+		GFF2611	0.73	-1.0
2,633,511	+		GFF2611	0.73	+0.1
2,633,515	-		GFF2611	0.73	-0.8
2,633,519	-		GFF2611	0.73	+0.2
2,633,528	-		GFF2611	0.74	-0.6
2,633,536	-		GFF2611	0.75	+0.4
2,633,538	+		GFF2611	0.75	+0.9
2,633,564	-		GFF2611	0.77	+1.5
2,633,596	+		GFF2611	0.80	-0.3
2,633,596	+		GFF2611	0.80	-0.5
2,633,596	+		GFF2611	0.80	+0.2
2,633,596	+		GFF2611	0.80	-0.5
2,633,604	-		GFF2611	0.80	-1.1
2,633,604	-		GFF2611	0.80	-1.7
2,633,604	-		GFF2611	0.80	-0.5
2,633,604	-		GFF2611	0.80	+0.8
2,633,676	+		GFF2611	0.86	-1.0
2,633,676	+		GFF2611	0.86	+0.8
2,633,676	+		GFF2611	0.86	-0.8
2,633,684	-		GFF2611	0.87	-0.1
2,633,684	-		GFF2611	0.87	-0.1
2,633,684	-		GFF2611	0.87	-1.0
2,633,685	+		GFF2611	0.87	+0.5
2,633,702	+		GFF2611	0.88	+0.4
2,633,702	+		GFF2611	0.88	-0.2
2,633,702	+		GFF2611	0.88	-0.2
2,633,702	+		GFF2611	0.88	-1.4
2,633,702	+		GFF2611	0.88	+0.5
2,633,702	+		GFF2611	0.88	+0.8
2,633,702	+		GFF2611	0.88	+0.1
2,633,707	+		GFF2611	0.89	-0.1
2,633,710	-		GFF2611	0.89	-1.5
2,633,710	-		GFF2611	0.89	-1.4
2,633,710	-		GFF2611	0.89	+0.3
2,633,710	-		GFF2611	0.89	-0.4
2,633,710	-		GFF2611	0.89	-1.1
2,633,710	-		GFF2611	0.89	-1.5
2,633,710	-		GFF2611	0.89	-2.2
2,633,715	-		GFF2611	0.89	+0.4
2,633,715	-		GFF2611	0.89	-0.4
2,633,774	-				-1.3
2,633,798	-				+0.2
2,633,810	+				+0.2
2,633,810	+				-0.0
2,633,818	-				+0.2
2,633,818	-				-1.5
2,633,829	+				-1.7
2,633,830	+				-0.7
2,633,830	+				-0.2
2,633,830	+				-0.4
2,633,830	+				-0.7
2,633,830	+				-0.6
2,633,836	+				+0.4
2,633,838	-				-0.2
2,633,838	-				-0.1
2,633,838	-				+0.4
2,633,838	-				-0.1
2,633,838	-				-3.1
2,633,838	-				-0.6
2,633,838	-				+1.3
2,633,848	+				+0.5
2,633,851	-				-0.0
2,633,851	-				+0.6
2,633,871	+				+0.2
2,633,876	+				+1.2
2,633,879	-				-0.4
2,633,879	-				-0.4
2,633,879	-				-0.7
2,633,884	-				-0.8
2,633,902	+				+0.1
2,633,922	+				-1.9
2,633,959	-		GFF2612	0.11	-0.6
2,633,997	+		GFF2612	0.15	+0.9
2,634,000	-		GFF2612	0.15	-1.5
2,634,005	-		GFF2612	0.16	+0.3
2,634,085	+		GFF2612	0.24	+0.8
2,634,098	+		GFF2612	0.25	+0.1
2,634,134	+		GFF2612	0.29	+1.7
2,634,137	-		GFF2612	0.29	+0.4
2,634,137	-		GFF2612	0.29	+1.0
2,634,137	-		GFF2612	0.29	+0.9
2,634,142	-		GFF2612	0.30	-0.5
2,634,142	-		GFF2612	0.30	-1.5
2,634,158	+		GFF2612	0.31	+0.3
2,634,183	-		GFF2612	0.34	-0.4
2,634,215	+		GFF2612	0.37	-1.4
2,634,222	+		GFF2612	0.38	-0.7
2,634,232	+		GFF2612	0.39	-2.1
2,634,232	+		GFF2612	0.39	-1.1
2,634,232	+		GFF2612	0.39	-1.0
2,634,240	-		GFF2612	0.39	+0.0
2,634,240	-		GFF2612	0.39	-1.8
2,634,240	-		GFF2612	0.39	-0.5
2,634,240	-		GFF2612	0.39	-0.1
2,634,268	+		GFF2612	0.42	+0.6
2,634,275	+		GFF2612	0.43	-1.7
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2,634,760	+				+0.9
2,634,770	+				+0.4
2,634,770	+				+0.1
2,634,770	+				+1.4
2,634,770	+				+1.4
2,634,778	-				+0.7
2,634,778	-				-0.4
2,634,786	+				-1.7
2,634,786	+				+1.1
2,634,786	+				+0.7
2,634,805	-				-0.9
2,634,810	-				+0.5