Strain Fitness in Sphingobium sp. HT1-2 around GFF2610

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,629,383	-				+0.5
2,629,392	-				+1.6
2,629,394	+				+1.3
2,629,400	-				+0.8
2,629,413	+				+1.4
2,629,413	+				-1.9
2,629,413	+				-0.5
2,629,413	+				-0.2
2,629,416	-				+1.4
2,629,421	-				-0.8
2,629,421	-				+0.3
2,629,421	-				+0.5
2,629,421	-				-0.1
2,629,421	-				-2.3
2,629,421	-				-1.3
2,629,845	-		GFF2609	0.64	-1.4
2,629,902	+		GFF2609	0.73	-2.1
2,629,989	+		GFF2609	0.86	-0.4
2,630,001	+		GFF2609	0.88	+0.8
2,630,036	-				+0.4
2,630,085	+				+0.3
2,630,115	+				-0.2
2,630,115	-				-1.3
2,630,354	+				+0.4
2,630,354	+				-0.1
2,630,354	+				+0.1
2,630,359	+				+0.1
2,630,359	+				-1.1
2,630,362	-				+1.0
2,630,363	+				-1.4
2,630,364	+				+1.7
2,630,364	+				-1.1
2,630,364	+				+0.1
2,630,367	-				+0.7
2,630,367	-				+0.4
2,630,372	-				+0.1
2,630,372	-				-0.5
2,630,372	-				-2.9
2,630,372	-				-0.3
2,630,372	-				-0.6
2,630,387	-				-0.7
2,630,409	+				-0.1
2,630,415	-				-0.1
2,630,415	-				-0.5
2,630,429	+				-0.9
2,630,432	-				-2.2
2,630,432	-				-1.3
2,630,473	-				-2.1
2,630,526	+				+0.2
2,630,529	-				+0.6
2,630,554	+				-0.5
2,630,622	+		GFF2610	0.11	-0.2
2,630,623	+		GFF2610	0.11	+0.5
2,630,629	+		GFF2610	0.11	-0.4
2,630,631	-		GFF2610	0.12	-0.6
2,630,635	+		GFF2610	0.12	-0.4
2,630,637	-		GFF2610	0.12	-0.1
2,630,641	+		GFF2610	0.12	-0.7
2,630,663	+		GFF2610	0.13	+0.7
2,630,663	+		GFF2610	0.13	+0.2
2,630,671	-		GFF2610	0.13	+0.1
2,630,702	+		GFF2610	0.15	-0.6
2,630,702	+		GFF2610	0.15	+0.6
2,630,710	-		GFF2610	0.15	-0.9
2,630,710	-		GFF2610	0.15	+0.4
2,630,719	+		GFF2610	0.16	+0.2
2,630,722	+		GFF2610	0.16	-1.0
2,630,729	+		GFF2610	0.16	-0.9
2,630,741	+		GFF2610	0.17	-0.8
2,630,749	-		GFF2610	0.17	-0.0
2,630,768	-		GFF2610	0.18	+1.6
2,630,768	-		GFF2610	0.18	-0.9
2,630,777	-		GFF2610	0.18	-0.6
2,630,792	+		GFF2610	0.19	-0.1
2,630,800	-		GFF2610	0.19	-0.7
2,630,809	+		GFF2610	0.20	-1.1
2,630,822	+		GFF2610	0.20	+0.3
2,630,835	-		GFF2610	0.21	+0.1
2,630,866	-		GFF2610	0.22	-2.5
2,630,888	-		GFF2610	0.23	-1.3
2,630,896	+		GFF2610	0.24	+0.3
2,630,904	+		GFF2610	0.24	-0.4
2,630,904	+		GFF2610	0.24	-1.4
2,630,904	-		GFF2610	0.24	+0.3
2,630,913	+		GFF2610	0.24	+0.3
2,630,914	-		GFF2610	0.24	-0.1
2,630,914	-		GFF2610	0.24	-0.1
2,630,969	+		GFF2610	0.27	+1.3
2,630,969	+		GFF2610	0.27	-0.4
2,630,969	+		GFF2610	0.27	-0.3
2,630,975	+		GFF2610	0.27	-0.8
2,630,978	-		GFF2610	0.27	-2.7
2,630,983	-		GFF2610	0.28	-1.0
2,631,018	+		GFF2610	0.29	-1.6
2,631,030	+		GFF2610	0.30	-0.1
2,631,031	-		GFF2610	0.30	+1.0
2,631,032	+		GFF2610	0.30	+0.2
2,631,032	+		GFF2610	0.30	-0.9
2,631,032	+		GFF2610	0.30	-1.1
2,631,038	-		GFF2610	0.30	+0.0
2,631,040	-		GFF2610	0.30	-0.3
2,631,061	+		GFF2610	0.31	-2.4
2,631,061	+		GFF2610	0.31	-0.9
2,631,067	+		GFF2610	0.31	-0.3
2,631,067	+		GFF2610	0.31	-0.5
2,631,067	+		GFF2610	0.31	+0.4
2,631,068	-		GFF2610	0.31	-0.2
2,631,072	+		GFF2610	0.32	-1.1
2,631,075	-		GFF2610	0.32	-0.9
2,631,077	+		GFF2610	0.32	-0.3
2,631,083	+		GFF2610	0.32	-1.5
2,631,085	-		GFF2610	0.32	-0.2
2,631,086	-		GFF2610	0.32	-0.6
2,631,100	+		GFF2610	0.33	-0.7
2,631,100	+		GFF2610	0.33	+0.6
2,631,102	+		GFF2610	0.33	+1.3
2,631,108	-		GFF2610	0.33	+0.1
2,631,110	-		GFF2610	0.33	-0.9
2,631,117	+		GFF2610	0.34	-0.1
2,631,117	+		GFF2610	0.34	-0.3
2,631,117	+		GFF2610	0.34	+0.1
2,631,122	+		GFF2610	0.34	-1.3
2,631,122	+		GFF2610	0.34	+0.1
2,631,122	+		GFF2610	0.34	-2.1
2,631,124	+		GFF2610	0.34	+0.4
2,631,130	-		GFF2610	0.34	-0.8
2,631,130	-		GFF2610	0.34	+0.3
2,631,130	-		GFF2610	0.34	+0.8
2,631,130	-		GFF2610	0.34	-0.1
2,631,130	-		GFF2610	0.34	-0.6
2,631,132	-		GFF2610	0.34	+0.1
2,631,132	-		GFF2610	0.34	-0.9
2,631,132	-		GFF2610	0.34	+0.7
2,631,132	-		GFF2610	0.34	+0.2
2,631,135	+		GFF2610	0.35	-1.8
2,631,142	-		GFF2610	0.35	-1.1
2,631,148	+		GFF2610	0.35	+0.1
2,631,154	+		GFF2610	0.35	-2.5
2,631,176	+		GFF2610	0.36	+0.6
2,631,176	+		GFF2610	0.36	-1.7
2,631,176	+		GFF2610	0.36	-0.1
2,631,190	+		GFF2610	0.37	+1.0
2,631,228	+		GFF2610	0.39	+0.4
2,631,228	+		GFF2610	0.39	+0.4
2,631,228	+		GFF2610	0.39	+1.2
2,631,228	+		GFF2610	0.39	-0.7
2,631,230	+		GFF2610	0.39	-1.5
2,631,230	+		GFF2610	0.39	+0.9
2,631,230	+		GFF2610	0.39	+0.5
2,631,236	-		GFF2610	0.39	-0.5
2,631,236	-		GFF2610	0.39	-0.3
2,631,238	-		GFF2610	0.39	-0.5
2,631,238	-		GFF2610	0.39	-1.4
2,631,238	-		GFF2610	0.39	-0.5
2,631,238	-		GFF2610	0.39	+0.5
2,631,242	+		GFF2610	0.39	-1.2
2,631,242	+		GFF2610	0.39	+0.5
2,631,250	-		GFF2610	0.40	-1.4
2,631,291	+		GFF2610	0.42	+0.2
2,631,297	+		GFF2610	0.42	+0.7
2,631,299	+		GFF2610	0.42	+1.4
2,631,299	+		GFF2610	0.42	-0.5
2,631,299	+		GFF2610	0.42	+1.2
2,631,299	+		GFF2610	0.42	-0.5
2,631,299	+		GFF2610	0.42	+1.0
2,631,299	+		GFF2610	0.42	-1.9
2,631,299	+		GFF2610	0.42	-0.7
2,631,299	+		GFF2610	0.42	+0.2
2,631,299	+		GFF2610	0.42	+0.3
2,631,299	+		GFF2610	0.42	-0.9
2,631,299	+		GFF2610	0.42	-0.7
2,631,307	-		GFF2610	0.42	-0.4
2,631,307	-		GFF2610	0.42	+0.6
2,631,307	-		GFF2610	0.42	-0.8
2,631,307	-		GFF2610	0.42	-0.2
2,631,307	-		GFF2610	0.42	-0.5
2,631,307	-		GFF2610	0.42	+1.2
2,631,307	-		GFF2610	0.42	+0.3
2,631,307	-		GFF2610	0.42	+1.7
2,631,307	-		GFF2610	0.42	-0.1
2,631,307	-		GFF2610	0.42	-1.0
2,631,307	-		GFF2610	0.42	-1.9
2,631,315	-		GFF2610	0.43	+0.4
2,631,332	+		GFF2610	0.44	-1.7
2,631,342	-		GFF2610	0.44	-0.2
2,631,425	+		GFF2610	0.48	-1.8
2,631,425	+		GFF2610	0.48	+0.9
2,631,425	+		GFF2610	0.48	-0.1
2,631,426	+		GFF2610	0.48	-0.5
2,631,433	-		GFF2610	0.48	-1.2
2,631,435	+		GFF2610	0.48	+0.1
2,631,505	+		GFF2610	0.51	+0.1
2,631,508	-		GFF2610	0.52	-2.3
2,631,513	+		GFF2610	0.52	-0.1
2,631,513	+		GFF2610	0.52	+0.3
2,631,526	-		GFF2610	0.52	+0.0
2,631,532	+		GFF2610	0.53	-0.2
2,631,532	+		GFF2610	0.53	+0.3
2,631,556	-		GFF2610	0.54	+0.3
2,631,586	+		GFF2610	0.55	+0.3
2,631,586	+		GFF2610	0.55	+0.1
2,631,586	+		GFF2610	0.55	+1.2
2,631,586	+		GFF2610	0.55	+0.5
2,631,594	-		GFF2610	0.55	+0.6
2,631,594	-		GFF2610	0.55	-1.0
2,631,594	-		GFF2610	0.55	+0.1
2,631,599	-		GFF2610	0.56	+0.2
2,631,640	-		GFF2610	0.58	-0.4
2,631,659	+		GFF2610	0.58	+0.1
2,631,685	+		GFF2610	0.60	-2.7
2,631,698	+		GFF2610	0.60	+0.6
2,631,698	+		GFF2610	0.60	+1.0
2,631,721	+		GFF2610	0.61	-1.5
2,631,721	+		GFF2610	0.61	-1.7
2,631,721	+		GFF2610	0.61	-0.3
2,631,721	+		GFF2610	0.61	-1.0
2,631,721	+		GFF2610	0.61	+0.2
2,631,734	-		GFF2610	0.62	+0.5
2,631,752	-		GFF2610	0.63	-0.8
2,631,795	+		GFF2610	0.65	-0.4
2,631,795	+		GFF2610	0.65	-0.2
2,631,797	+		GFF2610	0.65	+0.6
2,631,797	+		GFF2610	0.65	+0.3
2,631,797	+		GFF2610	0.65	+0.9
2,631,805	-		GFF2610	0.65	-1.9
2,631,814	+		GFF2610	0.66	-1.2
2,631,814	+		GFF2610	0.66	+0.7
2,631,814	+		GFF2610	0.66	+1.4
2,631,824	+		GFF2610	0.66	+0.3
2,631,824	+		GFF2610	0.66	-0.3
2,631,824	+		GFF2610	0.66	+0.1
2,631,824	+		GFF2610	0.66	-1.3
2,631,825	+		GFF2610	0.66	-0.8
2,631,832	-		GFF2610	0.66	+0.8
2,631,833	-		GFF2610	0.66	+0.5
2,631,852	-		GFF2610	0.67	-0.6
2,631,861	+		GFF2610	0.68	-0.0
2,631,869	-		GFF2610	0.68	+0.4
2,631,869	-		GFF2610	0.68	-0.4
2,631,869	-		GFF2610	0.68	+0.7
2,631,880	-		GFF2610	0.69	+0.1
2,631,886	+		GFF2610	0.69	+1.7
2,631,913	+		GFF2610	0.70	-0.0
2,631,937	+		GFF2610	0.71	+0.9
2,631,959	-		GFF2610	0.72	-0.7
2,631,973	+		GFF2610	0.73	-0.8
2,631,981	+		GFF2610	0.73	-0.9
2,631,981	-		GFF2610	0.73	-0.7
2,631,981	-		GFF2610	0.73	+1.1
2,631,995	+		GFF2610	0.74	+0.0
2,631,996	+		GFF2610	0.74	+1.5
2,632,046	-		GFF2610	0.76	-1.3
2,632,053	+		GFF2610	0.76	+1.0
2,632,058	+		GFF2610	0.77	-1.0
2,632,058	+		GFF2610	0.77	+0.5
2,632,058	+		GFF2610	0.77	+1.2
2,632,058	+		GFF2610	0.77	-0.3
2,632,058	+		GFF2610	0.77	-1.5
2,632,058	+		GFF2610	0.77	+0.4
2,632,058	+		GFF2610	0.77	-0.4
2,632,058	+		GFF2610	0.77	+1.0
2,632,066	-		GFF2610	0.77	-1.1
2,632,066	-		GFF2610	0.77	-1.7
2,632,066	-		GFF2610	0.77	-0.7
2,632,066	-		GFF2610	0.77	+0.3
2,632,066	-		GFF2610	0.77	-0.8
2,632,066	-		GFF2610	0.77	+1.0
2,632,066	-		GFF2610	0.77	-0.5
2,632,066	-		GFF2610	0.77	+0.1
2,632,066	-		GFF2610	0.77	+1.1
2,632,067	+		GFF2610	0.77	+0.0
2,632,067	+		GFF2610	0.77	+0.8
2,632,090	-		GFF2610	0.78	-0.6
2,632,090	-		GFF2610	0.78	+0.7
2,632,105	+		GFF2610	0.79	-0.3
2,632,144	+		GFF2610	0.81	-0.0
2,632,151	+		GFF2610	0.81	+0.7
2,632,152	-		GFF2610	0.81	-1.2
2,632,156	+		GFF2610	0.81	+0.1
2,632,170	-		GFF2610	0.82	-0.1
2,632,173	+		GFF2610	0.82	-0.2
2,632,181	-		GFF2610	0.82	+0.2
2,632,196	-		GFF2610	0.83	+0.3
2,632,227	+		GFF2610	0.84	-1.1
2,632,227	+		GFF2610	0.84	-2.3
2,632,235	-		GFF2610	0.85	-1.4
2,632,244	+		GFF2610	0.85	+0.9
2,632,244	+		GFF2610	0.85	+0.4
2,632,244	+		GFF2610	0.85	+0.7
2,632,245	-		GFF2610	0.85	-0.1
2,632,252	-		GFF2610	0.86	+0.2
2,632,267	-		GFF2610	0.86	-0.5
2,632,283	+		GFF2610	0.87	-1.5
2,632,310	+		GFF2610	0.88	+0.4
2,632,346	+		GFF2610	0.90	-1.4
2,632,386	-				+0.6
2,632,412	+				+0.1
2,632,444	+				-0.8
2,632,472	-				+0.6
2,632,491	+				-0.2
2,632,506	+				-0.7
2,632,535	+				-0.2
2,632,537	+				-0.2
2,632,537	+				+0.3
2,632,537	+				+0.1
2,632,542	+				-0.3
2,632,543	-				+0.7
2,632,543	-				-0.2
2,632,543	-				+0.0
2,632,544	-				-0.3
2,632,545	-				-0.7
2,632,547	+				-1.9
2,632,547	+				-1.0
2,632,547	+				-0.8
2,632,555	-				-0.2
2,632,555	-				+0.1
2,632,555	-				+0.2
2,632,562	+				+1.1
2,632,582	+				-0.5
2,632,582	+				-3.0
2,632,590	-				+0.6
2,632,602	+				-2.0
2,632,605	+				-0.1
2,632,605	+				-0.6
2,632,605	+				-1.7
2,632,610	-				-2.4
2,632,630	+				+2.1
2,632,647	-				-0.6
2,632,652	+				-1.7
2,632,660	-				-1.5
2,632,660	-				+0.3
2,632,666	-				+0.6
2,632,680	-				+0.3
2,632,689	+				-0.0
2,632,689	+				-0.4
2,632,689	+				-0.8
2,632,691	+				+0.2
2,632,694	+				+0.5
2,632,694	+				-0.3
2,632,694	+				-0.5
2,632,697	+				+0.2
2,632,697	-				-1.1
2,632,702	-				+0.5
2,632,702	-				-0.6
2,632,702	-				+1.0
2,632,702	-				-0.6
2,632,702	-				-0.1
2,632,702	-				-0.8
2,632,716	+				-0.7
2,632,719	-				+0.4
2,632,719	-				-0.3
2,632,721	+				-0.2
2,632,728	+				-1.8
2,632,729	-				+0.3
2,632,729	-				-1.9
2,632,729	-				-0.5
2,632,743	+		GFF2611	0.11	+0.0
2,632,751	-		GFF2611	0.12	-2.3
2,632,751	-		GFF2611	0.12	+0.4
2,632,753	-		GFF2611	0.12	+0.1
2,632,753	-		GFF2611	0.12	-1.7
2,632,764	+		GFF2611	0.13	+0.3
2,632,771	+		GFF2611	0.13	-0.2
2,632,771	+		GFF2611	0.13	-0.1
2,632,776	+		GFF2611	0.14	+0.1
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