Strain Fitness in Sphingobium sp. HT1-2 around GFF2609

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,628,422	+				+1.0
2,628,422	+				-1.1
2,628,425	-				-2.3
2,628,425	-				+0.2
2,628,427	+				+0.4
2,628,430	-				-0.0
2,628,430	-				-1.0
2,628,430	-				-0.5
2,628,430	-				+0.6
2,628,430	-				-0.4
2,628,435	-				-2.4
2,628,488	-		GFF2607	0.15	+0.1
2,628,499	+		GFF2607	0.18	-0.4
2,628,505	+		GFF2607	0.19	+1.1
2,628,515	-		GFF2607	0.21	-0.1
2,628,525	+		GFF2607	0.23	+1.2
2,628,525	+		GFF2607	0.23	+0.1
2,628,533	-		GFF2607	0.25	-0.5
2,628,533	-		GFF2607	0.25	-0.9
2,628,544	+		GFF2607	0.27	-2.6
2,628,546	+		GFF2607	0.27	+0.8
2,628,546	+		GFF2607	0.27	+1.2
2,628,554	-		GFF2607	0.29	-0.4
2,628,570	+		GFF2607	0.32	-1.1
2,628,570	+		GFF2607	0.32	+0.5
2,628,577	-		GFF2607	0.34	+0.7
2,628,577	-		GFF2607	0.34	-0.1
2,628,578	-		GFF2607	0.34	-1.4
2,628,580	+		GFF2607	0.34	+0.2
2,628,580	+		GFF2607	0.34	-1.6
2,628,588	-		GFF2607	0.36	+0.5
2,628,652	+		GFF2607	0.49	+0.1
2,628,658	+		GFF2607	0.50	-0.1
2,628,662	+		GFF2607	0.51	+1.0
2,628,670	-		GFF2607	0.52	+0.3
2,628,686	+		GFF2607	0.56	-0.1
2,628,687	-		GFF2607	0.56	-0.8
2,628,689	-		GFF2607	0.56	+0.3
2,628,689	-		GFF2607	0.56	-0.6
2,628,702	+		GFF2607	0.59	-1.3
2,628,711	-		GFF2607	0.61	-1.3
2,628,726	-		GFF2607	0.64	-0.1
2,628,726	-		GFF2607	0.64	-0.5
2,628,747	+		GFF2607	0.68	+0.7
2,628,755	-		GFF2607	0.70	-0.5
2,628,755	-		GFF2607	0.70	+0.9
2,628,755	-		GFF2607	0.70	-1.0
2,628,756	+		GFF2607	0.70	-1.9
2,628,765	+		GFF2607	0.72	-0.7
2,628,779	-		GFF2607	0.75	+0.1
2,628,800	+		GFF2607	0.79	-0.1
2,628,802	-		GFF2607	0.79	+0.1
2,628,818	+		GFF2607	0.83	-0.3
2,628,825	-		GFF2607	0.84	-0.6
2,628,826	+		GFF2607	0.84	-1.2
2,628,859	+				-0.4
2,628,885	+				-0.6
2,628,913	+				+0.3
2,628,921	-				+1.3
2,628,932	+				+1.0
2,628,932	+				-1.9
2,628,937	+				-0.6
2,628,940	-				+0.3
2,628,945	-				+0.5
2,628,945	-				+0.1
2,628,945	-				+0.4
2,628,948	+				+0.2
2,628,953	+				+0.3
2,628,953	+				-2.6
2,628,961	-				+0.3
2,628,963	+				+0.2
2,628,963	+				-1.9
2,628,963	+				-1.4
2,628,963	+				+1.0
2,628,963	+				+0.0
2,628,963	+				-0.9
2,628,963	+				-0.0
2,628,963	+				+0.4
2,628,963	+				-0.2
2,628,963	+				-0.4
2,628,968	+				-0.4
2,628,971	-				-0.9
2,628,971	-				-0.5
2,628,971	-				-1.5
2,628,971	-				-1.2
2,628,976	-				-1.2
2,628,987	+				-1.1
2,629,027	-				-0.5
2,629,068	+				+0.1
2,629,076	+				+0.2
2,629,081	+				-1.0
2,629,081	+				-0.9
2,629,081	+				-0.9
2,629,081	+				+1.4
2,629,081	+				-0.3
2,629,081	+				-0.8
2,629,081	+				-0.5
2,629,081	+				+0.3
2,629,081	+				-1.4
2,629,141	+				-0.9
2,629,141	+				+1.1
2,629,141	+				-0.5
2,629,147	+				+0.8
2,629,149	-				+1.0
2,629,149	-				-1.5
2,629,155	-				-1.2
2,629,245	+		GFF2608	0.41	+1.0
2,629,254	-		GFF2608	0.44	+0.0
2,629,254	-		GFF2608	0.44	+0.4
2,629,254	-		GFF2608	0.44	+0.0
2,629,305	-		GFF2608	0.62	-1.5
2,629,306	-		GFF2608	0.62	-0.7
2,629,308	+		GFF2608	0.63	+0.3
2,629,319	+		GFF2608	0.67	+0.2
2,629,339	+		GFF2608	0.74	+1.0
2,629,339	+		GFF2608	0.74	-1.6
2,629,346	+		GFF2608	0.77	+1.8
2,629,347	-		GFF2608	0.77	-0.3
2,629,347	-		GFF2608	0.77	-1.7
2,629,348	-		GFF2608	0.77	+0.3
2,629,359	+		GFF2608	0.81	+0.5
2,629,365	+		GFF2608	0.84	-0.1
2,629,367	-		GFF2608	0.84	-0.5
2,629,370	+		GFF2608	0.85	+0.3
2,629,373	-		GFF2608	0.86	+0.9
2,629,375	+		GFF2608	0.87	-0.5
2,629,378	-		GFF2608	0.88	+0.1
2,629,383	-				+0.5
2,629,392	-				+1.6
2,629,394	+				+1.3
2,629,400	-				+0.8
2,629,413	+				+1.4
2,629,413	+				-1.9
2,629,413	+				-0.5
2,629,413	+				-0.2
2,629,416	-				+1.4
2,629,421	-				-0.8
2,629,421	-				+0.3
2,629,421	-				+0.5
2,629,421	-				-0.1
2,629,421	-				-2.3
2,629,421	-				-1.3
2,629,845	-		GFF2609	0.64	-1.4
2,629,902	+		GFF2609	0.73	-2.1
2,629,989	+		GFF2609	0.86	-0.4
2,630,001	+		GFF2609	0.88	+0.8
2,630,036	-				+0.4
2,630,085	+				+0.3
2,630,115	+				-0.2
2,630,115	-				-1.3
2,630,354	+				+0.4
2,630,354	+				-0.1
2,630,354	+				+0.1
2,630,359	+				+0.1
2,630,359	+				-1.1
2,630,362	-				+1.0
2,630,363	+				-1.4
2,630,364	+				+1.7
2,630,364	+				-1.1
2,630,364	+				+0.1
2,630,367	-				+0.7
2,630,367	-				+0.4
2,630,372	-				+0.1
2,630,372	-				-0.5
2,630,372	-				-2.9
2,630,372	-				-0.3
2,630,372	-				-0.6
2,630,387	-				-0.7
2,630,409	+				-0.1
2,630,415	-				-0.1
2,630,415	-				-0.5
2,630,429	+				-0.9
2,630,432	-				-2.2
2,630,432	-				-1.3
2,630,473	-				-2.1
2,630,526	+				+0.2
2,630,529	-				+0.6
2,630,554	+				-0.5
2,630,622	+		GFF2610	0.11	-0.2
2,630,623	+		GFF2610	0.11	+0.5
2,630,629	+		GFF2610	0.11	-0.4
2,630,631	-		GFF2610	0.12	-0.6
2,630,635	+		GFF2610	0.12	-0.4
2,630,637	-		GFF2610	0.12	-0.1
2,630,641	+		GFF2610	0.12	-0.7
2,630,663	+		GFF2610	0.13	+0.7
2,630,663	+		GFF2610	0.13	+0.2
2,630,671	-		GFF2610	0.13	+0.1
2,630,702	+		GFF2610	0.15	-0.6
2,630,702	+		GFF2610	0.15	+0.6
2,630,710	-		GFF2610	0.15	-0.9
2,630,710	-		GFF2610	0.15	+0.4
2,630,719	+		GFF2610	0.16	+0.2
2,630,722	+		GFF2610	0.16	-1.0
2,630,729	+		GFF2610	0.16	-0.9
2,630,741	+		GFF2610	0.17	-0.8
2,630,749	-		GFF2610	0.17	-0.0
2,630,768	-		GFF2610	0.18	+1.6
2,630,768	-		GFF2610	0.18	-0.9
2,630,777	-		GFF2610	0.18	-0.6
2,630,792	+		GFF2610	0.19	-0.1
2,630,800	-		GFF2610	0.19	-0.7
2,630,809	+		GFF2610	0.20	-1.1
2,630,822	+		GFF2610	0.20	+0.3
2,630,835	-		GFF2610	0.21	+0.1
2,630,866	-		GFF2610	0.22	-2.5
2,630,888	-		GFF2610	0.23	-1.3
2,630,896	+		GFF2610	0.24	+0.3
2,630,904	+		GFF2610	0.24	-0.4
2,630,904	+		GFF2610	0.24	-1.4
2,630,904	-		GFF2610	0.24	+0.3
2,630,913	+		GFF2610	0.24	+0.3
2,630,914	-		GFF2610	0.24	-0.1
2,630,914	-		GFF2610	0.24	-0.1
2,630,969	+		GFF2610	0.27	+1.3
2,630,969	+		GFF2610	0.27	-0.4
2,630,969	+		GFF2610	0.27	-0.3
2,630,975	+		GFF2610	0.27	-0.8
2,630,978	-		GFF2610	0.27	-2.7
2,630,983	-		GFF2610	0.28	-1.0
2,631,018	+		GFF2610	0.29	-1.6
2,631,030	+		GFF2610	0.30	-0.1
2,631,031	-		GFF2610	0.30	+1.0
2,631,032	+		GFF2610	0.30	+0.2
2,631,032	+		GFF2610	0.30	-0.9
2,631,032	+		GFF2610	0.30	-1.1
2,631,038	-		GFF2610	0.30	+0.0
2,631,040	-		GFF2610	0.30	-0.3
2,631,061	+		GFF2610	0.31	-2.4
2,631,061	+		GFF2610	0.31	-0.9
2,631,067	+		GFF2610	0.31	-0.3
2,631,067	+		GFF2610	0.31	-0.5
2,631,067	+		GFF2610	0.31	+0.4
2,631,068	-		GFF2610	0.31	-0.2
2,631,072	+		GFF2610	0.32	-1.1
2,631,075	-		GFF2610	0.32	-0.9
2,631,077	+		GFF2610	0.32	-0.3
2,631,083	+		GFF2610	0.32	-1.5