Strain Fitness in Sphingobium sp. HT1-2 around GFF2559

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,574,531	+		GFF2557	0.78	-1.4
2,574,591	+				-0.4
2,574,617	-				+1.0
2,574,617	-				-0.3
2,574,645	+				-0.8
2,574,645	-				+0.9
2,574,676	-				+0.6
2,574,677	+				-1.3
2,574,695	-				-0.6
2,574,736	+				-0.2
2,574,736	+				-0.3
2,574,745	-				+1.9
2,574,761	+		GFF2558	0.11	-0.6
2,574,782	+		GFF2558	0.13	-2.3
2,574,782	+		GFF2558	0.13	-0.3
2,574,790	-		GFF2558	0.15	+0.6
2,574,790	-		GFF2558	0.15	+0.9
2,574,815	+		GFF2558	0.18	-0.7
2,574,835	-		GFF2558	0.21	-0.0
2,574,849	+		GFF2558	0.23	-0.1
2,574,865	-		GFF2558	0.25	+0.5
2,574,884	+		GFF2558	0.27	-1.9
2,574,892	-		GFF2558	0.29	+0.1
2,574,894	-		GFF2558	0.29	-2.1
2,574,894	-		GFF2558	0.29	-0.7
2,574,894	-		GFF2558	0.29	-0.3
2,574,899	-		GFF2558	0.29	-0.1
2,574,904	+		GFF2558	0.30	-2.9
2,574,911	+		GFF2558	0.31	-1.1
2,574,911	+		GFF2558	0.31	-0.3
2,574,917	+		GFF2558	0.32	-0.7
2,574,919	-		GFF2558	0.32	-0.3
2,574,951	-		GFF2558	0.37	-0.3
2,574,965	-		GFF2558	0.39	-0.4
2,574,966	-		GFF2558	0.39	-0.8
2,574,979	+		GFF2558	0.40	+1.0
2,574,987	-		GFF2558	0.42	+0.3
2,574,992	-		GFF2558	0.42	+0.5
2,574,992	-		GFF2558	0.42	-0.2
2,574,999	+		GFF2558	0.43	+0.0
2,575,026	-		GFF2558	0.47	+0.5
2,575,034	-		GFF2558	0.48	-1.3
2,575,055	-		GFF2558	0.51	-0.9
2,575,060	+		GFF2558	0.52	-0.6
2,575,091	+		GFF2558	0.56	+0.1
2,575,091	+		GFF2558	0.56	-0.2
2,575,099	-		GFF2558	0.57	-0.0
2,575,099	-		GFF2558	0.57	-1.1
2,575,099	-		GFF2558	0.57	-1.2
2,575,125	-		GFF2558	0.60	-1.1
2,575,128	+		GFF2558	0.61	-2.5
2,575,136	-		GFF2558	0.62	-0.7
2,575,136	-		GFF2558	0.62	+0.3
2,575,136	-		GFF2558	0.62	-0.2
2,575,143	+		GFF2558	0.63	-2.9
2,575,150	+		GFF2558	0.64	-0.2
2,575,150	+		GFF2558	0.64	-1.9
2,575,150	+		GFF2558	0.64	-2.0
2,575,151	-		GFF2558	0.64	+0.1
2,575,152	+		GFF2558	0.64	-0.9
2,575,152	+		GFF2558	0.64	+0.6
2,575,158	-		GFF2558	0.65	+0.2
2,575,160	-		GFF2558	0.65	-0.1
2,575,160	-		GFF2558	0.65	+1.1
2,575,165	+		GFF2558	0.66	-1.1
2,575,165	+		GFF2558	0.66	+0.2
2,575,165	+		GFF2558	0.66	-0.6
2,575,167	-		GFF2558	0.66	+0.3
2,575,173	-		GFF2558	0.67	+0.5
2,575,173	-		GFF2558	0.67	-0.7
2,575,173	-		GFF2558	0.67	+0.2
2,575,195	+		GFF2558	0.70	+0.8
2,575,198	+		GFF2558	0.71	+0.3
2,575,201	-		GFF2558	0.71	-0.0
2,575,204	+		GFF2558	0.71	+1.4
2,575,205	-		GFF2558	0.71	+0.6
2,575,237	-		GFF2558	0.76	-2.1
2,575,242	+		GFF2558	0.77	-0.1
2,575,242	+		GFF2558	0.77	-0.8
2,575,265	-		GFF2558	0.80	-0.1
2,575,276	+		GFF2558	0.81	-1.0
2,575,276	+		GFF2558	0.81	-1.3
2,575,282	+		GFF2558	0.82	-0.4
2,575,282	+		GFF2558	0.82	-0.6
2,575,284	-		GFF2558	0.82	-0.1
2,575,290	-		GFF2558	0.83	+0.3
2,575,290	-		GFF2558	0.83	+0.3
2,575,290	-		GFF2558	0.83	-0.2
2,575,293	+		GFF2558	0.84	-0.9
2,575,293	+		GFF2558	0.84	-1.0
2,575,293	+		GFF2558	0.84	-0.8
2,575,293	+		GFF2558	0.84	-1.0
2,575,293	+		GFF2558	0.84	+0.1
2,575,293	+		GFF2558	0.84	-1.5
2,575,293	+		GFF2558	0.84	-1.1
2,575,298	+		GFF2558	0.84	-0.8
2,575,301	-		GFF2558	0.85	+0.1
2,575,301	-		GFF2558	0.85	-0.9
2,575,301	-		GFF2558	0.85	-0.7
2,575,311	+		GFF2558	0.86	-0.8
2,575,311	+		GFF2558	0.86	-0.1
2,575,311	+		GFF2558	0.86	+0.3
2,575,314	-		GFF2558	0.86	+1.4
2,575,316	+		GFF2558	0.87	-0.4
2,575,319	-		GFF2558	0.87	-2.6
2,575,372	-				-1.5
2,575,375	+				+0.1
2,575,383	-				+0.0
2,575,438	+				-2.1
2,575,446	-				+0.8
2,575,446	-				+0.2
2,575,485	+				-1.5
2,575,485	+				-0.2
2,575,523	-				-0.1
2,575,525	+				+0.3
2,575,549	-				-1.5
2,575,582	+				-1.9
2,575,592	+				+0.6
2,575,593	+				+1.2
2,575,593	+				-0.8
2,575,593	+				-1.4
2,575,600	-				-1.1
2,575,600	-				-0.5
2,575,601	-				-1.0
2,575,601	-				+0.4
2,575,645	-		GFF2559	0.15	+0.2
2,575,648	+		GFF2559	0.16	-1.5
2,575,648	+		GFF2559	0.16	-0.6
2,575,648	+		GFF2559	0.16	-2.3
2,575,648	+		GFF2559	0.16	+0.7
2,575,656	-		GFF2559	0.17	-0.7
2,575,656	-		GFF2559	0.17	-0.5
2,575,656	-		GFF2559	0.17	-0.8
2,575,656	-		GFF2559	0.17	+0.2
2,575,656	-		GFF2559	0.17	-0.5
2,575,656	-		GFF2559	0.17	-1.1
2,575,656	-		GFF2559	0.17	-0.3
2,575,656	-		GFF2559	0.17	+1.1
2,575,656	-		GFF2559	0.17	+0.2
2,575,683	+		GFF2559	0.20	-0.8
2,575,683	+		GFF2559	0.20	+0.8
2,575,683	+		GFF2559	0.20	-0.5
2,575,696	-		GFF2559	0.21	-2.5
2,575,718	+		GFF2559	0.24	+0.7
2,575,726	-		GFF2559	0.25	+0.3
2,575,745	+		GFF2559	0.28	+0.1
2,575,763	+		GFF2559	0.30	-0.0
2,575,763	+		GFF2559	0.30	+1.5
2,575,763	+		GFF2559	0.30	+0.1
2,575,763	+		GFF2559	0.30	+1.2
2,575,763	+		GFF2559	0.30	+0.6
2,575,771	-		GFF2559	0.31	+0.1
2,575,771	-		GFF2559	0.31	-0.5
2,575,771	-		GFF2559	0.31	+0.1
2,575,771	-		GFF2559	0.31	-0.3
2,575,771	-		GFF2559	0.31	+0.0
2,575,771	-		GFF2559	0.31	+1.7
2,575,771	-		GFF2559	0.31	+0.6
2,575,786	-		GFF2559	0.33	-0.5
2,575,786	-		GFF2559	0.33	+1.1
2,575,790	+		GFF2559	0.33	+0.0
2,575,790	+		GFF2559	0.33	-0.9
2,575,815	+		GFF2559	0.36	+0.4
2,575,871	+		GFF2559	0.43	+0.9
2,575,934	+		GFF2559	0.51	-1.4
2,575,937	-		GFF2559	0.51	-1.2
2,575,953	+		GFF2559	0.53	-0.5
2,575,970	-		GFF2559	0.55	-0.2
2,575,974	+		GFF2559	0.56	-1.6
2,575,974	+		GFF2559	0.56	-0.9
2,575,990	+		GFF2559	0.58	+0.9
2,576,021	+		GFF2559	0.62	+1.0
2,576,055	-		GFF2559	0.66	+0.5
2,576,065	-		GFF2559	0.67	-1.5
2,576,111	+		GFF2559	0.73	+0.3
2,576,120	+		GFF2559	0.74	-1.7
2,576,138	+		GFF2559	0.76	+0.9
2,576,148	+		GFF2559	0.77	-2.1
2,576,151	-		GFF2559	0.78	-0.0
2,576,157	+		GFF2559	0.78	+0.6
2,576,162	+		GFF2559	0.79	-0.7
2,576,165	-		GFF2559	0.79	-1.3
2,576,254	-				-1.1
2,576,254	-				+0.1
2,576,254	-				-0.5
2,576,254	-				-1.5
2,576,258	+				+0.6
2,576,270	+				-0.7
2,576,270	+				+0.4
2,576,270	+				-1.0
2,576,273	+				+1.6
2,576,278	-				+0.0
2,576,278	-				-0.9
2,576,278	-				-0.4
2,576,283	+				-0.2
2,576,283	+				+0.6
2,576,285	+				-2.1
2,576,287	+				+0.9
2,576,291	-				-0.6
2,576,295	-				-1.4
2,576,301	-				-0.3
2,576,301	-				-0.4
2,576,333	-				+1.3
2,576,344	+				+0.4
2,576,361	-				-0.6
2,576,367	+				+0.7
2,576,368	+				-1.5
2,576,368	+				-0.1
2,576,368	+				-0.3
2,576,368	+				+0.3
2,576,368	+				-1.5
2,576,368	+				-0.9
2,576,368	+				-0.6
2,576,374	+				-1.2
2,576,376	-		GFF2560	0.10	+1.2
2,576,376	-		GFF2560	0.10	+0.7
2,576,376	-		GFF2560	0.10	+0.1
2,576,381	+		GFF2560	0.11	-0.6
2,576,381	+		GFF2560	0.11	-1.6
2,576,381	+		GFF2560	0.11	-0.1
2,576,382	-		GFF2560	0.12	-1.8
2,576,382	-		GFF2560	0.12	-0.1
2,576,382	-		GFF2560	0.12	-0.0
2,576,383	-		GFF2560	0.12	-1.6
2,576,385	+		GFF2560	0.12	-0.3
2,576,386	+		GFF2560	0.13	-0.4
2,576,386	+		GFF2560	0.13	-3.0
2,576,386	+		GFF2560	0.13	+0.1
2,576,386	+		GFF2560	0.13	+1.1
2,576,386	+		GFF2560	0.13	-1.1
2,576,389	-		GFF2560	0.13	-0.1
2,576,391	+		GFF2560	0.14	-2.5
2,576,391	+		GFF2560	0.14	-1.5
2,576,394	-		GFF2560	0.14	-3.0
2,576,394	-		GFF2560	0.14	-0.4
2,576,394	-		GFF2560	0.14	+0.2
2,576,401	+		GFF2560	0.16	+0.2
2,576,401	+		GFF2560	0.16	-3.7
2,576,401	+		GFF2560	0.16	+0.7
2,576,409	-		GFF2560	0.18	-2.8
2,576,409	-		GFF2560	0.18	+0.2
2,576,409	-		GFF2560	0.18	+0.2
2,576,409	-		GFF2560	0.18	-0.3
2,576,409	-		GFF2560	0.18	+0.1
2,576,409	-		GFF2560	0.18	-0.2
2,576,450	-		GFF2560	0.26	-0.7
2,576,450	-		GFF2560	0.26	+0.7
2,576,481	+		GFF2560	0.33	-0.6
2,576,501	-		GFF2560	0.37	+0.1
2,576,508	-		GFF2560	0.39	+0.3
2,576,513	+		GFF2560	0.40	-0.3
2,576,515	+		GFF2560	0.40	+0.4
2,576,523	+		GFF2560	0.42	-0.8
2,576,525	+		GFF2560	0.43	-1.1
2,576,562	-		GFF2560	0.51	-0.1
2,576,564	-		GFF2560	0.51	+0.3
2,576,604	+		GFF2560	0.60	-0.5
2,576,612	-		GFF2560	0.61	-0.6
2,576,643	-		GFF2560	0.68	-3.5
2,576,672	-		GFF2560	0.74	+1.0
2,576,694	-		GFF2560	0.79	+0.5
2,576,701	+		GFF2560	0.81	-0.1
2,576,739	+		GFF2560	0.89	+1.3
2,576,748	+				-1.0
2,576,756	-				+0.0
2,576,768	+				-0.8
2,576,788	-				-0.7
2,576,807	+				+0.2
2,576,839	-				-1.3
2,576,874	+				-0.3
2,576,878	+				+0.3
2,576,891	+				+0.4
2,576,891	+				+0.2
2,576,891	+				-1.6
2,576,891	+				+1.3
2,576,891	+				+0.9
2,576,921	+				-0.3
2,576,921	+				+1.2
2,576,934	+				-1.3
2,576,934	+				+1.0
2,576,934	+				+1.1
2,576,953	-				+0.6
2,576,966	+				+0.7
2,576,966	+				-0.0
2,577,001	-				+0.5
2,577,001	-				+0.0
2,577,005	-				+0.8
2,577,049	+				-0.2
2,577,054	+		GFF2561	0.10	+1.6
2,577,054	+		GFF2561	0.10	+0.2
2,577,062	-		GFF2561	0.10	+1.2
2,577,062	-		GFF2561	0.10	-0.2
2,577,062	-		GFF2561	0.10	+0.5
2,577,075	-		GFF2561	0.11	-1.8
2,577,094	-		GFF2561	0.12	+0.2
2,577,110	+		GFF2561	0.12	+0.1
2,577,134	+		GFF2561	0.13	-2.1
2,577,143	-		GFF2561	0.13	+0.7
2,577,169	-		GFF2561	0.14	+1.3
2,577,187	+		GFF2561	0.15	+0.8
2,577,195	-		GFF2561	0.15	-0.8
2,577,257	-		GFF2561	0.18	+0.6
2,577,257	-		GFF2561	0.18	-0.2
2,577,274	-		GFF2561	0.18	+0.4
2,577,279	-		GFF2561	0.18	+1.8
2,577,279	-		GFF2561	0.18	+0.6
2,577,281	+		GFF2561	0.19	-0.4
2,577,281	+		GFF2561	0.19	+0.0
2,577,289	-		GFF2561	0.19	-1.7
2,577,325	+		GFF2561	0.20	+0.7
2,577,325	+		GFF2561	0.20	-0.9
2,577,325	+		GFF2561	0.20	+0.5
2,577,325	+		GFF2561	0.20	-0.5