Strain Fitness in Sphingobium sp. HT1-2 around GFF2513

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,534,180	+				+0.2
2,534,202	+				-0.9
2,534,202	+				-1.1
2,534,202	+				+0.3
2,534,202	+				-1.8
2,534,202	+				-0.3
2,534,202	+				-0.6
2,534,205	-				+0.4
2,534,207	+				-0.3
2,534,210	-				+0.3
2,534,210	-				-0.2
2,534,210	-				-0.7
2,534,210	-				-0.2
2,534,211	+				-0.3
2,534,217	+				-2.1
2,534,217	+				+0.7
2,534,220	-				+0.6
2,534,220	-				-1.6
2,534,220	-				-0.3
2,534,221	-				+0.3
2,534,236	-				+0.1
2,534,242	+				+0.9
2,534,247	+				+1.5
2,534,250	-				-0.5
2,534,252	+				-0.1
2,534,254	-				-0.1
2,534,255	-				+0.3
2,534,255	-				-0.6
2,534,255	-				-0.1
2,534,263	+		GFF2512	0.10	-0.4
2,534,265	-		GFF2512	0.10	+0.9
2,534,289	-		GFF2512	0.13	-0.5
2,534,352	-		GFF2512	0.19	+0.2
2,534,369	+		GFF2512	0.21	-0.2
2,534,369	+		GFF2512	0.21	-0.5
2,534,372	+		GFF2512	0.21	+0.3
2,534,379	+		GFF2512	0.22	+1.0
2,534,384	+		GFF2512	0.22	+0.5
2,534,384	+		GFF2512	0.22	-0.1
2,534,385	+		GFF2512	0.22	-0.7
2,534,385	+		GFF2512	0.22	+0.5
2,534,388	-		GFF2512	0.23	-0.9
2,534,390	+		GFF2512	0.23	-2.0
2,534,390	+		GFF2512	0.23	+0.6
2,534,391	+		GFF2512	0.23	-1.4
2,534,392	-		GFF2512	0.23	-0.6
2,534,393	-		GFF2512	0.23	-0.3
2,534,398	-		GFF2512	0.24	+0.1
2,534,398	-		GFF2512	0.24	+0.2
2,534,417	+		GFF2512	0.26	+0.3
2,534,417	+		GFF2512	0.26	-0.7
2,534,440	-		GFF2512	0.28	-0.3
2,534,440	-		GFF2512	0.28	-0.0
2,534,457	+		GFF2512	0.30	-1.7
2,534,465	-		GFF2512	0.31	-0.5
2,534,490	-		GFF2512	0.33	-2.1
2,534,503	+		GFF2512	0.34	+0.5
2,534,507	-		GFF2512	0.35	+0.4
2,534,511	-		GFF2512	0.35	+1.4
2,534,532	-		GFF2512	0.37	-0.6
2,534,543	+		GFF2512	0.38	-0.5
2,534,597	+		GFF2512	0.44	-1.6
2,534,597	+		GFF2512	0.44	+0.8
2,534,602	+		GFF2512	0.44	+1.0
2,534,605	+		GFF2512	0.45	+1.1
2,534,616	+		GFF2512	0.46	+1.0
2,534,644	+		GFF2512	0.49	+0.4
2,534,646	+		GFF2512	0.49	-0.7
2,534,646	-		GFF2512	0.49	+0.2
2,534,659	+		GFF2512	0.50	-0.3
2,534,659	+		GFF2512	0.50	-0.2
2,534,669	+		GFF2512	0.51	-2.0
2,534,669	+		GFF2512	0.51	+1.1
2,534,669	+		GFF2512	0.51	-0.6
2,534,669	+		GFF2512	0.51	-0.0
2,534,676	+		GFF2512	0.52	-0.1
2,534,677	-		GFF2512	0.52	+0.5
2,534,677	-		GFF2512	0.52	-1.3
2,534,677	-		GFF2512	0.52	-2.4
2,534,677	-		GFF2512	0.52	-1.6
2,534,677	-		GFF2512	0.52	-0.0
2,534,678	+		GFF2512	0.52	+0.7
2,534,685	-		GFF2512	0.53	+0.3
2,534,686	+		GFF2512	0.53	+0.6
2,534,686	+		GFF2512	0.53	-0.1
2,534,688	+		GFF2512	0.53	+0.3
2,534,694	-		GFF2512	0.54	+0.7
2,534,696	-		GFF2512	0.54	-0.0
2,534,709	+		GFF2512	0.55	+0.3
2,534,715	+		GFF2512	0.56	+0.4
2,534,715	+		GFF2512	0.56	+0.2
2,534,723	-		GFF2512	0.57	-0.5
2,534,723	-		GFF2512	0.57	-0.8
2,534,723	-		GFF2512	0.57	-0.9
2,534,734	+		GFF2512	0.58	-1.4
2,534,742	-		GFF2512	0.58	+0.7
2,534,748	+		GFF2512	0.59	-2.2
2,534,753	+		GFF2512	0.60	+0.8
2,534,756	-		GFF2512	0.60	-1.8
2,534,756	-		GFF2512	0.60	+0.3
2,534,756	-		GFF2512	0.60	-2.6
2,534,756	-		GFF2512	0.60	-0.9
2,534,756	-		GFF2512	0.60	+0.4
2,534,758	+		GFF2512	0.60	-0.2
2,534,761	-		GFF2512	0.60	-0.0
2,534,763	+		GFF2512	0.61	-0.1
2,534,763	+		GFF2512	0.61	-0.4
2,534,763	+		GFF2512	0.61	-0.8
2,534,768	+		GFF2512	0.61	-0.9
2,534,770	+		GFF2512	0.61	+0.1
2,534,771	-		GFF2512	0.61	-2.9
2,534,776	-		GFF2512	0.62	+1.1
2,534,778	-		GFF2512	0.62	+0.3
2,534,800	+		GFF2512	0.64	-0.8
2,534,808	-		GFF2512	0.65	+0.2
2,534,808	-		GFF2512	0.65	-0.3
2,534,810	+		GFF2512	0.65	+0.5
2,534,817	+		GFF2512	0.66	-1.6
2,534,827	+		GFF2512	0.67	-1.9
2,534,837	+		GFF2512	0.68	+0.2
2,534,902	+		GFF2512	0.75	-1.3
2,534,910	-		GFF2512	0.75	-0.1
2,534,910	-		GFF2512	0.75	-1.8
2,534,915	-		GFF2512	0.76	-1.0
2,534,916	+		GFF2512	0.76	+0.1
2,534,916	+		GFF2512	0.76	-1.4
2,534,920	-		GFF2512	0.76	-0.3
2,534,920	-		GFF2512	0.76	-1.1
2,534,976	-		GFF2512	0.82	-1.9
2,534,976	-		GFF2512	0.82	-1.1
2,534,981	-		GFF2512	0.83	+0.1
2,535,025	-		GFF2512	0.87	+1.4
2,535,025	-		GFF2512	0.87	-0.8
2,535,057	+				-3.0
2,535,057	+				-1.7
2,535,065	-				-0.9
2,535,065	-				-0.6
2,535,068	+				-1.3
2,535,068	+				-0.3
2,535,083	+				+1.0
2,535,083	+				+0.2
2,535,083	+				-2.1
2,535,083	+				+0.1
2,535,083	+				+0.3
2,535,083	+				-0.9
2,535,086	-				-0.5
2,535,091	-				+0.1
2,535,091	-				+0.4
2,535,091	-				+0.9
2,535,091	-				-0.4
2,535,091	-				+1.1
2,535,091	-				-1.4
2,535,091	-				-0.3
2,535,093	-				-0.7
2,535,094	-				+0.2
2,535,103	+				+0.2
2,535,122	+				-0.2
2,535,127	+				-0.1
2,535,130	-				-0.9
2,535,137	+				-0.1
2,535,137	+				-0.1
2,535,146	+				-0.5
2,535,152	+				-0.3
2,535,153	+				+0.7
2,535,153	+				-0.2
2,535,155	-				-1.3
2,535,164	+				-0.6
2,535,164	+				-0.5
2,535,167	-				+1.0
2,535,172	-				-0.4
2,535,176	-				-2.6
2,535,184	+				-1.0
2,535,192	-				-0.7
2,535,217	+				-0.8
2,535,236	+				+0.1
2,535,236	+				-0.5
2,535,244	-				-0.6
2,535,260	+				-0.3
2,535,270	+				+0.4
2,535,270	+				-0.2
2,535,270	+				-1.0
2,535,273	-				-1.1
2,535,275	+				+0.9
2,535,275	+				+1.1
2,535,275	+				-0.3
2,535,275	+				-1.2
2,535,275	+				+0.3
2,535,278	-				+1.0
2,535,278	-				-0.2
2,535,278	-				-1.5
2,535,281	-		GFF2513	0.10	-1.4
2,535,283	-		GFF2513	0.10	+1.4
2,535,283	-		GFF2513	0.10	-0.2
2,535,283	-		GFF2513	0.10	-0.7
2,535,283	-		GFF2513	0.10	+0.8
2,535,283	-		GFF2513	0.10	+0.0
2,535,283	-		GFF2513	0.10	+0.7
2,535,283	-		GFF2513	0.10	+1.7
2,535,305	+		GFF2513	0.12	-0.4
2,535,313	-		GFF2513	0.13	-0.8
2,535,318	+		GFF2513	0.13	-1.3
2,535,318	+		GFF2513	0.13	-0.7
2,535,321	-		GFF2513	0.14	-0.2
2,535,326	-		GFF2513	0.14	-0.6
2,535,326	-		GFF2513	0.14	-0.2
2,535,360	-		GFF2513	0.17	+0.2
2,535,371	+		GFF2513	0.18	-0.3
2,535,371	-		GFF2513	0.18	+0.9
2,535,379	-		GFF2513	0.19	-0.0
2,535,381	-		GFF2513	0.19	+0.8
2,535,388	+		GFF2513	0.19	-0.9
2,535,388	+		GFF2513	0.19	-1.0
2,535,391	-		GFF2513	0.20	+0.1
2,535,393	+		GFF2513	0.20	+0.3
2,535,393	+		GFF2513	0.20	-0.7
2,535,393	+		GFF2513	0.20	+0.0
2,535,393	+		GFF2513	0.20	-1.9
2,535,393	+		GFF2513	0.20	-0.2
2,535,398	+		GFF2513	0.20	+1.0
2,535,398	+		GFF2513	0.20	-2.5
2,535,398	+		GFF2513	0.20	+0.1
2,535,401	-		GFF2513	0.20	-2.4
2,535,401	-		GFF2513	0.20	-0.7
2,535,401	-		GFF2513	0.20	-0.3
2,535,401	-		GFF2513	0.20	+0.5
2,535,406	-		GFF2513	0.21	-0.9
2,535,406	-		GFF2513	0.21	+0.1
2,535,406	-		GFF2513	0.21	-0.0
2,535,406	-		GFF2513	0.21	-0.6
2,535,406	-		GFF2513	0.21	-0.7
2,535,406	-		GFF2513	0.21	+1.4
2,535,406	-		GFF2513	0.21	-0.5
2,535,421	+		GFF2513	0.22	-0.1
2,535,426	+		GFF2513	0.23	+0.8
2,535,426	+		GFF2513	0.23	-0.6
2,535,429	-		GFF2513	0.23	+0.6
2,535,434	-		GFF2513	0.23	+2.5
2,535,434	-		GFF2513	0.23	-0.2
2,535,440	-		GFF2513	0.24	-0.1
2,535,442	+		GFF2513	0.24	-0.9
2,535,442	+		GFF2513	0.24	+0.5
2,535,449	+		GFF2513	0.24	+0.7
2,535,472	-		GFF2513	0.26	+0.3
2,535,492	-		GFF2513	0.28	-1.1
2,535,526	-		GFF2513	0.31	+0.3
2,535,534	+		GFF2513	0.32	-1.3
2,535,542	-		GFF2513	0.32	-0.3
2,535,562	+		GFF2513	0.34	-1.4
2,535,566	+		GFF2513	0.34	-0.2
2,535,566	+		GFF2513	0.34	+0.3
2,535,566	+		GFF2513	0.34	+0.6
2,535,566	+		GFF2513	0.34	-0.2
2,535,566	+		GFF2513	0.34	-0.4
2,535,566	+		GFF2513	0.34	-0.2
2,535,566	+		GFF2513	0.34	+0.8
2,535,566	+		GFF2513	0.34	-2.0
2,535,566	+		GFF2513	0.34	-0.8
2,535,566	+		GFF2513	0.34	-3.1
2,535,566	+		GFF2513	0.34	+0.3
2,535,567	+		GFF2513	0.35	-2.6
2,535,567	+		GFF2513	0.35	-0.4
2,535,567	+		GFF2513	0.35	+0.1
2,535,570	-		GFF2513	0.35	-0.0
2,535,574	-		GFF2513	0.35	-0.3
2,535,574	-		GFF2513	0.35	-0.9
2,535,574	-		GFF2513	0.35	-1.6
2,535,574	-		GFF2513	0.35	+0.9
2,535,574	-		GFF2513	0.35	-1.4
2,535,575	-		GFF2513	0.35	+0.2
2,535,575	-		GFF2513	0.35	-0.4
2,535,585	-		GFF2513	0.36	-0.6
2,535,619	+		GFF2513	0.39	-0.0
2,535,621	+		GFF2513	0.39	-0.1
2,535,629	+		GFF2513	0.40	+0.8
2,535,639	-		GFF2513	0.41	-1.4
2,535,650	+		GFF2513	0.42	+0.5
2,535,663	-		GFF2513	0.43	+0.9
2,535,663	-		GFF2513	0.43	+2.1
2,535,665	-		GFF2513	0.43	+0.8
2,535,683	+		GFF2513	0.44	+0.1
2,535,692	+		GFF2513	0.45	+0.1
2,535,692	+		GFF2513	0.45	-0.0
2,535,700	-		GFF2513	0.46	+0.2
2,535,700	-		GFF2513	0.46	-0.5
2,535,700	-		GFF2513	0.46	+1.0
2,535,708	-		GFF2513	0.47	+0.4
2,535,719	+		GFF2513	0.47	-1.3
2,535,731	-		GFF2513	0.48	+0.2
2,535,737	-		GFF2513	0.49	+0.6
2,535,746	+		GFF2513	0.50	-0.2
2,535,746	+		GFF2513	0.50	-0.8
2,535,754	-		GFF2513	0.50	-1.3
2,535,754	-		GFF2513	0.50	-1.6
2,535,754	-		GFF2513	0.50	-0.0
2,535,756	+		GFF2513	0.51	-0.0
2,535,759	-		GFF2513	0.51	+0.6
2,535,768	-		GFF2513	0.52	-1.4
2,535,776	+		GFF2513	0.52	+0.4
2,535,776	+		GFF2513	0.52	+0.3
2,535,784	+		GFF2513	0.53	-1.6
2,535,784	+		GFF2513	0.53	+0.1
2,535,784	-		GFF2513	0.53	-0.5
2,535,784	-		GFF2513	0.53	+1.4
2,535,787	+		GFF2513	0.53	+0.8
2,535,789	+		GFF2513	0.53	+0.9
2,535,789	+		GFF2513	0.53	-1.2
2,535,789	+		GFF2513	0.53	-0.9
2,535,795	+		GFF2513	0.54	+1.3
2,535,795	+		GFF2513	0.54	-1.3
2,535,795	+		GFF2513	0.54	-1.8
2,535,795	+		GFF2513	0.54	+0.3
2,535,803	-		GFF2513	0.55	-2.0
2,535,826	+		GFF2513	0.57	+0.3
2,535,852	+		GFF2513	0.59	-1.2
2,535,852	+		GFF2513	0.59	+0.3
2,535,857	+		GFF2513	0.59	-2.5
2,535,863	+		GFF2513	0.60	+0.4
2,535,865	-		GFF2513	0.60	+0.6
2,535,865	-		GFF2513	0.60	+0.0
2,535,871	-		GFF2513	0.60	-0.4
2,535,871	-		GFF2513	0.60	-0.4
2,535,875	+		GFF2513	0.61	-0.5
2,535,875	+		GFF2513	0.61	+0.2
2,535,902	-		GFF2513	0.63	-0.4
2,535,906	+		GFF2513	0.63	+1.3
2,535,906	+		GFF2513	0.63	-1.1
2,535,914	-		GFF2513	0.64	-0.3
2,535,914	-		GFF2513	0.64	-2.1
2,535,915	+		GFF2513	0.64	-0.0
2,535,921	+		GFF2513	0.65	-1.0
2,535,931	-		GFF2513	0.65	+0.0
2,535,958	+		GFF2513	0.68	+0.8
2,535,961	-		GFF2513	0.68	+0.5
2,535,966	-		GFF2513	0.68	+0.4
2,535,966	-		GFF2513	0.68	+0.3
2,535,970	+		GFF2513	0.69	+0.4
2,535,973	+		GFF2513	0.69	-0.8
2,535,973	+		GFF2513	0.69	-0.9
2,535,981	-		GFF2513	0.70	+1.1
2,535,981	-		GFF2513	0.70	-0.1
2,535,981	-		GFF2513	0.70	-1.2
2,536,004	-		GFF2513	0.72	-1.7
2,536,009	-		GFF2513	0.72	-0.7
2,536,014	-		GFF2513	0.73	+0.5
2,536,014	-		GFF2513	0.73	+0.0
2,536,015	-		GFF2513	0.73	-0.9
2,536,017	+		GFF2513	0.73	+0.2
2,536,022	-		GFF2513	0.73	-1.4
2,536,077	+		GFF2513	0.78	-0.1
2,536,077	+		GFF2513	0.78	-1.4
2,536,086	+		GFF2513	0.79	+0.2
2,536,099	-		GFF2513	0.80	-1.4
2,536,131	+		GFF2513	0.82	+0.6
2,536,131	+		GFF2513	0.82	-0.4
2,536,131	+		GFF2513	0.82	-0.6
2,536,131	+		GFF2513	0.82	-1.6
2,536,131	+		GFF2513	0.82	+0.4
2,536,131	+		GFF2513	0.82	-1.6
2,536,131	+		GFF2513	0.82	+1.1
2,536,131	+		GFF2513	0.82	+0.5
2,536,131	+		GFF2513	0.82	+0.1
2,536,131	+		GFF2513	0.82	+0.2
2,536,131	+		GFF2513	0.82	+0.9
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2,536,200	-		GFF2513	0.88	+0.6
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2,536,218	+		GFF2513	0.90	-2.1
2,536,218	+		GFF2513	0.90	-0.1
2,536,218	+		GFF2513	0.90	-0.2
2,536,225	+				-0.7
2,536,225	+				+1.0
2,536,226	-				+0.1
2,536,226	-				-0.2
2,536,251	+				-0.5
2,536,251	+				-1.2
2,536,259	-				+0.5
2,536,259	-				-1.1
2,536,261	+				-0.2
2,536,268	-				-0.7
2,536,269	-				-0.6
2,536,273	+				-1.6
2,536,292	-				-0.4
2,536,346	+				-1.8
2,536,349	-				+1.4
2,536,350	+				+1.7
2,536,351	+				-1.9
2,536,359	-				-0.7
2,536,367	+				+0.1
2,536,373	+				+0.1
2,536,378	+				-1.2
2,536,382	+				-2.1
2,536,398	+				+1.8
2,536,398	+				+0.4
2,536,398	+				-0.0
2,536,409	+				+0.4
2,536,427	+				+1.8
2,536,427	+				+0.0
2,536,431	+				+0.0
2,536,435	-				-0.5
2,536,439	-				+1.0
2,536,449	-				+0.8
2,536,457	+				-0.5
2,536,470	-				+1.5
2,536,473	+				-0.3
2,536,476	-				-0.5
2,536,481	-				+1.2
2,536,489	-				-2.4
2,536,500	+				-0.5
2,536,500	+				-0.8
2,536,500	+				+0.5
2,536,505	+				-0.7
2,536,508	-				-1.7
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2,536,513	-				+1.5
2,536,608	-				-0.2
2,536,615	+				-0.9
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2,536,673	+		GFF2514	0.21	+1.7
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2,536,694	+		GFF2514	0.27	-0.1
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2,536,697	-		GFF2514	0.28	+0.0
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2,536,707	-		GFF2514	0.31	+0.1
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2,536,918	+				-0.5
2,536,918	+				-0.1
2,536,925	-				+1.6
2,536,928	+				+0.0
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2,536,933	+				-1.3
2,536,933	+				-1.9
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2,536,941	-				-1.0
2,536,952	+				-0.3
2,536,956	+				-0.8
2,536,956	+				+0.1
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2,536,956	+				+0.1
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2,536,977	-				+0.7
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2,536,979	+				+0.8
2,536,979	+				+1.1
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2,536,987	-				+0.7
2,536,987	-				-0.9
2,536,987	-				+0.7
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2,536,987	-				+0.4
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2,537,017	-				-0.2
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