Strain Fitness in Sphingobium sp. HT1-2 around GFF2488

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,509,467	+				+0.6
2,509,472	+				-0.7
2,509,472	+				+1.1
2,509,472	+				-0.8
2,509,472	+				+0.2
2,509,472	+				+0.9
2,509,480	-				+1.8
2,509,480	-				-0.5
2,509,480	-				+0.1
2,509,480	-				+1.2
2,509,518	+				-1.5
2,509,518	+				-1.6
2,509,518	+				-1.9
2,509,518	+				+1.3
2,509,518	+				-0.6
2,509,518	+				-0.9
2,509,518	-				-0.7
2,509,651	+				-1.6
2,510,199	+				-0.8
2,510,239	-				+0.3
2,510,257	-				-0.3
2,510,259	+				+0.3
2,510,259	+				+0.6
2,510,267	-				-0.1
2,510,267	-				-2.8
2,510,267	-				-1.6
2,510,267	-				+0.3
2,510,293	-				-0.1
2,510,293	-				-1.5
2,510,309	+				-0.3
2,510,310	+				-1.1
2,510,310	+				+0.2
2,510,312	-				-0.8
2,510,318	-				+0.8
2,510,318	-				-1.7
2,510,336	-				-1.1
2,510,358	-				+0.4
2,510,358	-				-1.4
2,510,372	+				+0.2
2,510,385	-				-1.1
2,510,399	+				+1.3
2,510,422	-				-2.1
2,510,424	-				-2.9
2,510,424	-				-0.8
2,510,439	-				-1.6
2,510,507	+		GFF2488	0.10	-0.2
2,510,507	+		GFF2488	0.10	+0.4
2,510,507	+		GFF2488	0.10	-0.2
2,510,522	+		GFF2488	0.12	+0.0
2,510,527	-		GFF2488	0.12	+0.2
2,510,527	-		GFF2488	0.12	-0.4
2,510,530	+		GFF2488	0.12	-0.7
2,510,564	-		GFF2488	0.15	+0.2
2,510,566	+		GFF2488	0.15	-0.8
2,510,571	+		GFF2488	0.16	-1.6
2,510,574	-		GFF2488	0.16	-0.8
2,510,574	-		GFF2488	0.16	-1.0
2,510,576	+		GFF2488	0.16	-0.7
2,510,599	-		GFF2488	0.18	-0.7
2,510,622	+		GFF2488	0.20	+0.2
2,510,653	+		GFF2488	0.23	-0.1
2,510,669	+		GFF2488	0.24	-0.3
2,510,698	-		GFF2488	0.27	+0.7
2,510,710	+		GFF2488	0.28	-0.2
2,510,710	+		GFF2488	0.28	-0.8
2,510,710	+		GFF2488	0.28	+0.8
2,510,710	+		GFF2488	0.28	+0.6
2,510,710	+		GFF2488	0.28	-1.5
2,510,715	+		GFF2488	0.28	-1.0
2,510,715	+		GFF2488	0.28	-0.5
2,510,715	+		GFF2488	0.28	-0.9
2,510,715	+		GFF2488	0.28	+1.0
2,510,718	-		GFF2488	0.28	-0.3
2,510,720	+		GFF2488	0.29	+0.3
2,510,723	-		GFF2488	0.29	-0.7
2,510,723	-		GFF2488	0.29	+0.3
2,510,723	-		GFF2488	0.29	-0.4
2,510,723	-		GFF2488	0.29	-0.1
2,510,723	-		GFF2488	0.29	+0.7
2,510,723	-		GFF2488	0.29	-0.2
2,510,723	-		GFF2488	0.29	-0.6
2,510,723	-		GFF2488	0.29	-0.9
2,510,725	+		GFF2488	0.29	-0.8
2,510,725	+		GFF2488	0.29	-0.3
2,510,733	-		GFF2488	0.30	+0.9
2,510,733	-		GFF2488	0.30	-1.5
2,510,775	+		GFF2488	0.33	-0.1
2,510,797	-		GFF2488	0.35	-0.7
2,510,816	+		GFF2488	0.37	-0.6
2,510,817	+		GFF2488	0.37	+0.2
2,510,817	+		GFF2488	0.37	-0.9
2,510,817	+		GFF2488	0.37	-1.6
2,510,824	-		GFF2488	0.38	+0.0
2,510,824	-		GFF2488	0.38	-0.3
2,510,824	-		GFF2488	0.38	+0.1
2,510,842	+		GFF2488	0.39	-1.6
2,510,842	+		GFF2488	0.39	+0.3
2,510,842	+		GFF2488	0.39	-1.0
2,510,850	-		GFF2488	0.40	-1.8
2,510,850	-		GFF2488	0.40	-0.3
2,510,858	+		GFF2488	0.41	-0.2
2,510,896	-		GFF2488	0.44	-0.5
2,510,935	-		GFF2488	0.47	+0.1
2,510,936	-		GFF2488	0.47	+0.3
2,510,936	-		GFF2488	0.47	-0.7
2,510,958	-		GFF2488	0.49	-1.8
2,510,971	-		GFF2488	0.50	-0.6
2,510,974	-		GFF2488	0.51	-1.7
2,510,998	+		GFF2488	0.53	+0.4
2,511,038	-		GFF2488	0.56	-0.5
2,511,038	-		GFF2488	0.56	+0.9
2,511,052	+		GFF2488	0.57	-1.0
2,511,086	+		GFF2488	0.60	+0.7
2,511,086	+		GFF2488	0.60	+0.6
2,511,086	+		GFF2488	0.60	+1.3
2,511,086	+		GFF2488	0.60	+0.3
2,511,086	+		GFF2488	0.60	-1.6
2,511,086	+		GFF2488	0.60	-1.6
2,511,086	+		GFF2488	0.60	+1.1
2,511,086	+		GFF2488	0.60	+1.3
2,511,086	+		GFF2488	0.60	+1.3
2,511,086	+		GFF2488	0.60	+0.7
2,511,086	+		GFF2488	0.60	-0.4
2,511,086	+		GFF2488	0.60	-1.8
2,511,086	+		GFF2488	0.60	+0.4
2,511,094	-		GFF2488	0.61	+0.3
2,511,094	-		GFF2488	0.61	+0.3
2,511,094	-		GFF2488	0.61	+0.1
2,511,094	-		GFF2488	0.61	-0.9
2,511,094	-		GFF2488	0.61	-0.8
2,511,094	-		GFF2488	0.61	+0.6
2,511,115	+		GFF2488	0.63	-0.7
2,511,115	+		GFF2488	0.63	+0.3
2,511,115	+		GFF2488	0.63	-0.7
2,511,115	+		GFF2488	0.63	+1.1
2,511,125	+		GFF2488	0.64	-0.3
2,511,125	+		GFF2488	0.64	-1.7
2,511,125	+		GFF2488	0.64	-0.6
2,511,143	-		GFF2488	0.65	-0.5
2,511,143	-		GFF2488	0.65	-0.4
2,511,166	+		GFF2488	0.67	-0.1
2,511,174	+		GFF2488	0.68	-0.0
2,511,174	-		GFF2488	0.68	+0.1
2,511,179	-		GFF2488	0.68	+0.3
2,511,192	-		GFF2488	0.69	-1.5
2,511,204	-		GFF2488	0.70	-0.6
2,511,220	+		GFF2488	0.72	-0.9
2,511,230	+		GFF2488	0.73	+1.2
2,511,230	+		GFF2488	0.73	-0.5
2,511,230	+		GFF2488	0.73	+0.5
2,511,238	-		GFF2488	0.73	-0.1
2,511,238	-		GFF2488	0.73	+0.1
2,511,238	-		GFF2488	0.73	-0.9
2,511,238	-		GFF2488	0.73	-0.5
2,511,238	-		GFF2488	0.73	+0.9
2,511,238	-		GFF2488	0.73	-1.3
2,511,247	+		GFF2488	0.74	-1.1
2,511,250	+		GFF2488	0.74	-0.9
2,511,260	+		GFF2488	0.75	+0.2
2,511,275	+		GFF2488	0.77	-0.5
2,511,282	-		GFF2488	0.77	-0.4
2,511,299	-		GFF2488	0.79	+0.0
2,511,343	+		GFF2488	0.82	-2.4
2,511,397	-		GFF2488	0.87	-0.2
2,511,413	+		GFF2488	0.89	-0.8
2,511,452	-				-1.3
2,511,459	-				-1.0
2,511,464	+				-0.4
2,511,478	-				+1.9
2,511,504	+				+0.6
2,511,511	-				-0.6
2,511,518	-				-0.1
2,511,520	-				+0.2
2,511,520	-				-1.0
2,511,532	+				-0.1
2,511,532	+				-0.6
2,511,532	+				+0.4
2,511,535	-				+0.2
2,511,540	-				+0.8
2,511,547	-				-0.5
2,511,559	+				-0.4
2,511,564	+				-1.5
2,511,564	+				-0.3
2,511,577	+				-0.3
2,511,590	+				+1.2
2,511,600	-				-1.0
2,511,606	+				-0.1
2,511,610	-		GFF2489	0.11	-1.0
2,511,619	-		GFF2489	0.14	-1.0
2,511,621	-		GFF2489	0.15	-1.0
2,511,631	-		GFF2489	0.19	+0.3
2,511,636	+		GFF2489	0.21	+0.7
2,511,729	+		GFF2489	0.59	-0.6
2,511,755	+		GFF2489	0.70	+0.5
2,511,833	-				-2.4
2,511,844	+				-0.2
2,511,857	-				-0.1
2,511,885	+				-1.5
2,511,887	-				-0.1
2,511,925	+				+0.2
2,511,925	+				-0.6
2,511,936	+				-0.4
2,511,952	+				+0.4
2,512,008	+		GFF2490	0.19	-1.6
2,512,008	+		GFF2490	0.19	+0.3
2,512,014	-		GFF2490	0.20	-0.0
2,512,025	+		GFF2490	0.23	+0.4
2,512,033	-		GFF2490	0.24	-1.1
2,512,033	-		GFF2490	0.24	-1.0
2,512,033	-		GFF2490	0.24	-0.3
2,512,033	-		GFF2490	0.24	+0.4
2,512,033	-		GFF2490	0.24	-0.4
2,512,033	-		GFF2490	0.24	-0.0
2,512,043	+		GFF2490	0.26	-0.3
2,512,050	-		GFF2490	0.28	+0.7
2,512,058	+		GFF2490	0.29	+0.7
2,512,063	+		GFF2490	0.30	-1.6
2,512,071	-		GFF2490	0.32	+0.2
2,512,074	+		GFF2490	0.32	+1.1
2,512,096	+		GFF2490	0.37	-1.8
2,512,104	-		GFF2490	0.38	-1.1
2,512,159	-		GFF2490	0.49	+0.9
2,512,234	+		GFF2490	0.64	-0.2
2,512,234	+		GFF2490	0.64	-1.1
2,512,234	+		GFF2490	0.64	-0.3
2,512,234	+		GFF2490	0.64	+0.1
2,512,234	+		GFF2490	0.64	+0.1
2,512,234	+		GFF2490	0.64	-0.5
2,512,242	-		GFF2490	0.66	-1.5
2,512,242	-		GFF2490	0.66	-1.1
2,512,244	+		GFF2490	0.66	+0.9
2,512,261	-		GFF2490	0.69	+0.0
2,512,278	+		GFF2490	0.73	+0.4
2,512,278	+		GFF2490	0.73	+0.0
2,512,278	+		GFF2490	0.73	-1.4
2,512,278	+		GFF2490	0.73	-0.5
2,512,286	-		GFF2490	0.74	-1.4
2,512,286	-		GFF2490	0.74	+0.2
2,512,286	-		GFF2490	0.74	+0.7
2,512,293	+		GFF2490	0.76	-2.0
2,512,293	+		GFF2490	0.76	+0.8
2,512,293	+		GFF2490	0.76	-0.4
2,512,301	-		GFF2490	0.77	-0.7
2,512,301	-		GFF2490	0.77	-1.6
2,512,303	+		GFF2490	0.78	+0.5
2,512,303	-		GFF2490	0.78	-0.7
2,512,311	-		GFF2490	0.79	+1.0
2,512,340	-		GFF2490	0.85	-1.2
2,512,350	+		GFF2490	0.87	-1.3
2,512,358	-		GFF2490	0.89	-0.7
2,512,390	+				+0.3
2,512,390	+				-0.9
2,512,390	+				+0.3
2,512,390	+				-2.1
2,512,390	+				-1.4
2,512,398	-				+0.9
2,512,398	-				-0.0
2,512,398	-				+0.1
2,512,398	-				-1.0
2,512,433	-				+0.8
2,512,451	-				-0.1
2,512,463	+				+0.3
2,512,463	+				-0.3
2,512,463	+				+1.1
2,512,463	+				+0.8
2,512,465	+				-1.6
2,512,471	-				-0.3
2,512,471	-				-1.3
2,512,471	-				-0.0
2,512,471	-				-0.3
2,512,471	-				-1.7
2,512,471	-				-0.3
2,512,531	+				-1.0
2,512,532	-				-1.9